data_5DNW # _model_server_result.job_id DlwRWa4RY5SKLecX4cVO6w _model_server_result.datetime_utc '2024-11-12 07:30:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dnw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":309}' # _entry.id 5DNW # _exptl.entry_id 5DNW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5DNW _cell.length_a 75.94 _cell.length_b 75.94 _cell.length_c 181.47 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DNW _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O PRO 114 A PRO 109 1_555 K NA NA . A NA 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc2 A O PHE 117 A PHE 112 1_555 K NA NA . A NA 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc3 K NA NA . A NA 310 1_555 N O HOH . A HOH 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc4 K NA NA . A NA 310 1_555 N O HOH . A HOH 554 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc5 K NA NA . A NA 310 1_555 N O HOH . A HOH 591 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc6 L NA NA . A NA 311 1_555 N O HOH . A HOH 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? metalc ? metalc7 L NA NA . A NA 311 1_555 N O HOH . A HOH 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc8 L NA NA . A NA 311 1_555 N O HOH . A HOH 542 8_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc9 L NA NA . A NA 311 1_555 N O HOH . A HOH 618 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc10 L NA NA . A NA 311 1_555 N O HOH . A HOH 622 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? metalc ? metalc11 M NA NA . A NA 312 1_555 N O HOH . A HOH 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc12 M NA NA . A NA 312 1_555 N O HOH . A HOH 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc13 M NA NA . A NA 312 1_555 N O HOH . A HOH 439 8_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? metalc ? metalc14 M NA NA . A NA 312 1_555 N O HOH . A HOH 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? metalc ? metalc15 M NA NA . A NA 312 1_555 N O HOH . A HOH 520 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? metalc ? metalc16 M NA NA . A NA 312 1_555 N O HOH . A HOH 542 8_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5DNW _atom_sites.fract_transf_matrix[1][1] 0.013168 _atom_sites.fract_transf_matrix[1][2] 0.007603 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015205 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005511 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMT A 1 301 1 FMT FMT . C 2 FMT A 1 302 2 FMT FMT . D 2 FMT A 1 303 3 FMT FMT . E 2 FMT A 1 304 4 FMT FMT . F 2 FMT A 1 305 6 FMT FMT . G 2 FMT A 1 306 7 FMT FMT . H 2 FMT A 1 307 8 FMT FMT . I 3 EDO A 1 308 1 EDO EDO . J 3 EDO A 1 309 2 EDO EDO . K 4 NA A 1 310 1 NA NA . L 4 NA A 1 311 2 NA NA . M 4 NA A 1 312 3 NA NA . N 5 HOH A 1 401 254 HOH HOH . N 5 HOH A 2 402 207 HOH HOH . N 5 HOH A 3 403 100 HOH HOH . N 5 HOH A 4 404 151 HOH HOH . N 5 HOH A 5 405 20 HOH HOH . N 5 HOH A 6 406 54 HOH HOH . N 5 HOH A 7 407 271 HOH HOH . N 5 HOH A 8 408 154 HOH HOH . N 5 HOH A 9 409 130 HOH HOH . N 5 HOH A 10 410 26 HOH HOH . N 5 HOH A 11 411 48 HOH HOH . N 5 HOH A 12 412 7 HOH HOH . N 5 HOH A 13 413 262 HOH HOH . N 5 HOH A 14 414 214 HOH HOH . N 5 HOH A 15 415 117 HOH HOH . N 5 HOH A 16 416 115 HOH HOH . N 5 HOH A 17 417 28 HOH HOH . N 5 HOH A 18 418 4 HOH HOH . N 5 HOH A 19 419 80 HOH HOH . N 5 HOH A 20 420 228 HOH HOH . N 5 HOH A 21 421 50 HOH HOH . N 5 HOH A 22 422 39 HOH HOH . N 5 HOH A 23 423 255 HOH HOH . N 5 HOH A 24 424 257 HOH HOH . N 5 HOH A 25 425 205 HOH HOH . N 5 HOH A 26 426 8 HOH HOH . N 5 HOH A 27 427 172 HOH HOH . N 5 HOH A 28 428 223 HOH HOH . N 5 HOH A 29 429 45 HOH HOH . N 5 HOH A 30 430 107 HOH HOH . N 5 HOH A 31 431 51 HOH HOH . N 5 HOH A 32 432 32 HOH HOH . N 5 HOH A 33 433 160 HOH HOH . N 5 HOH A 34 434 58 HOH HOH . N 5 HOH A 35 435 56 HOH HOH . N 5 HOH A 36 436 85 HOH HOH . N 5 HOH A 37 437 220 HOH HOH . N 5 HOH A 38 438 116 HOH HOH . N 5 HOH A 39 439 79 HOH HOH . N 5 HOH A 40 440 19 HOH HOH . N 5 HOH A 41 441 41 HOH HOH . N 5 HOH A 42 442 55 HOH HOH . N 5 HOH A 43 443 237 HOH HOH . N 5 HOH A 44 444 101 HOH HOH . N 5 HOH A 45 445 64 HOH HOH . N 5 HOH A 46 446 248 HOH HOH . N 5 HOH A 47 447 165 HOH HOH . N 5 HOH A 48 448 285 HOH HOH . N 5 HOH A 49 449 157 HOH HOH . N 5 HOH A 50 450 35 HOH HOH . N 5 HOH A 51 451 29 HOH HOH . N 5 HOH A 52 452 18 HOH HOH . N 5 HOH A 53 453 10 HOH HOH . N 5 HOH A 54 454 201 HOH HOH . N 5 HOH A 55 455 91 HOH HOH . N 5 HOH A 56 456 22 HOH HOH . N 5 HOH A 57 457 186 HOH HOH . N 5 HOH A 58 458 72 HOH HOH . N 5 HOH A 59 459 192 HOH HOH . N 5 HOH A 60 460 2 HOH HOH . N 5 HOH A 61 461 30 HOH HOH . N 5 HOH A 62 462 229 HOH HOH . N 5 HOH A 63 463 31 HOH HOH . N 5 HOH A 64 464 44 HOH HOH . N 5 HOH A 65 465 109 HOH HOH . N 5 HOH A 66 466 5 HOH HOH . N 5 HOH A 67 467 122 HOH HOH . N 5 HOH A 68 468 298 HOH HOH . N 5 HOH A 69 469 15 HOH HOH . N 5 HOH A 70 470 61 HOH HOH . N 5 HOH A 71 471 299 HOH HOH . N 5 HOH A 72 472 14 HOH HOH . N 5 HOH A 73 473 6 HOH HOH . N 5 HOH A 74 474 59 HOH HOH . N 5 HOH A 75 475 74 HOH HOH . N 5 HOH A 76 476 38 HOH HOH . N 5 HOH A 77 477 92 HOH HOH . N 5 HOH A 78 478 241 HOH HOH . N 5 HOH A 79 479 108 HOH HOH . N 5 HOH A 80 480 77 HOH HOH . N 5 HOH A 81 481 17 HOH HOH . N 5 HOH A 82 482 68 HOH HOH . N 5 HOH A 83 483 37 HOH HOH . N 5 HOH A 84 484 273 HOH HOH . N 5 HOH A 85 485 163 HOH HOH . N 5 HOH A 86 486 71 HOH HOH . N 5 HOH A 87 487 57 HOH HOH . N 5 HOH A 88 488 103 HOH HOH . N 5 HOH A 89 489 263 HOH HOH . N 5 HOH A 90 490 36 HOH HOH . N 5 HOH A 91 491 132 HOH HOH . N 5 HOH A 92 492 252 HOH HOH . N 5 HOH A 93 493 216 HOH HOH . N 5 HOH A 94 494 27 HOH HOH . N 5 HOH A 95 495 90 HOH HOH . N 5 HOH A 96 496 40 HOH HOH . N 5 HOH A 97 497 25 HOH HOH . N 5 HOH A 98 498 226 HOH HOH . N 5 HOH A 99 499 42 HOH HOH . N 5 HOH A 100 500 164 HOH HOH . N 5 HOH A 101 501 23 HOH HOH . N 5 HOH A 102 502 81 HOH HOH . N 5 HOH A 103 503 292 HOH HOH . N 5 HOH A 104 504 244 HOH HOH . N 5 HOH A 105 505 290 HOH HOH . N 5 HOH A 106 506 135 HOH HOH . N 5 HOH A 107 507 75 HOH HOH . N 5 HOH A 108 508 70 HOH HOH . N 5 HOH A 109 509 274 HOH HOH . N 5 HOH A 110 510 76 HOH HOH . N 5 HOH A 111 511 152 HOH HOH . N 5 HOH A 112 512 82 HOH HOH . N 5 HOH A 113 513 60 HOH HOH . N 5 HOH A 114 514 89 HOH HOH . N 5 HOH A 115 515 127 HOH HOH . N 5 HOH A 116 516 53 HOH HOH . N 5 HOH A 117 517 102 HOH HOH . N 5 HOH A 118 518 1 HOH HOH . N 5 HOH A 119 519 9 HOH HOH . N 5 HOH A 120 520 125 HOH HOH . N 5 HOH A 121 521 264 HOH HOH . N 5 HOH A 122 522 279 HOH HOH . N 5 HOH A 123 523 153 HOH HOH . N 5 HOH A 124 524 167 HOH HOH . N 5 HOH A 125 525 256 HOH HOH . N 5 HOH A 126 526 69 HOH HOH . N 5 HOH A 127 527 266 HOH HOH . N 5 HOH A 128 528 258 HOH HOH . N 5 HOH A 129 529 238 HOH HOH . N 5 HOH A 130 530 243 HOH HOH . N 5 HOH A 131 531 195 HOH HOH . N 5 HOH A 132 532 208 HOH HOH . N 5 HOH A 133 533 232 HOH HOH . N 5 HOH A 134 534 221 HOH HOH . N 5 HOH A 135 535 78 HOH HOH . N 5 HOH A 136 536 235 HOH HOH . N 5 HOH A 137 537 227 HOH HOH . N 5 HOH A 138 538 265 HOH HOH . N 5 HOH A 139 539 231 HOH HOH . N 5 HOH A 140 540 119 HOH HOH . N 5 HOH A 141 541 202 HOH HOH . N 5 HOH A 142 542 267 HOH HOH . N 5 HOH A 143 543 95 HOH HOH . N 5 HOH A 144 544 286 HOH HOH . N 5 HOH A 145 545 233 HOH HOH . N 5 HOH A 146 546 98 HOH HOH . N 5 HOH A 147 547 123 HOH HOH . N 5 HOH A 148 548 104 HOH HOH . N 5 HOH A 149 549 210 HOH HOH . N 5 HOH A 150 550 21 HOH HOH . N 5 HOH A 151 551 96 HOH HOH . N 5 HOH A 152 552 34 HOH HOH . N 5 HOH A 153 553 138 HOH HOH . N 5 HOH A 154 554 52 HOH HOH . N 5 HOH A 155 555 251 HOH HOH . N 5 HOH A 156 556 171 HOH HOH . N 5 HOH A 157 557 193 HOH HOH . N 5 HOH A 158 558 291 HOH HOH . N 5 HOH A 159 559 206 HOH HOH . N 5 HOH A 160 560 278 HOH HOH . N 5 HOH A 161 561 224 HOH HOH . N 5 HOH A 162 562 209 HOH HOH . N 5 HOH A 163 563 49 HOH HOH . N 5 HOH A 164 564 284 HOH HOH . N 5 HOH A 165 565 261 HOH HOH . N 5 HOH A 166 566 129 HOH HOH . N 5 HOH A 167 567 63 HOH HOH . N 5 HOH A 168 568 250 HOH HOH . N 5 HOH A 169 569 222 HOH HOH . N 5 HOH A 170 570 159 HOH HOH . N 5 HOH A 171 571 43 HOH HOH . N 5 HOH A 172 572 287 HOH HOH . N 5 HOH A 173 573 204 HOH HOH . N 5 HOH A 174 574 245 HOH HOH . N 5 HOH A 175 575 134 HOH HOH . N 5 HOH A 176 576 282 HOH HOH . N 5 HOH A 177 577 137 HOH HOH . N 5 HOH A 178 578 297 HOH HOH . N 5 HOH A 179 579 295 HOH HOH . N 5 HOH A 180 580 114 HOH HOH . N 5 HOH A 181 581 283 HOH HOH . N 5 HOH A 182 582 300 HOH HOH . N 5 HOH A 183 583 46 HOH HOH . N 5 HOH A 184 584 147 HOH HOH . N 5 HOH A 185 585 94 HOH HOH . N 5 HOH A 186 586 249 HOH HOH . N 5 HOH A 187 587 62 HOH HOH . N 5 HOH A 188 588 110 HOH HOH . N 5 HOH A 189 589 275 HOH HOH . N 5 HOH A 190 590 240 HOH HOH . N 5 HOH A 191 591 199 HOH HOH . N 5 HOH A 192 592 294 HOH HOH . N 5 HOH A 193 593 239 HOH HOH . N 5 HOH A 194 594 293 HOH HOH . N 5 HOH A 195 595 272 HOH HOH . N 5 HOH A 196 596 66 HOH HOH . N 5 HOH A 197 597 281 HOH HOH . N 5 HOH A 198 598 99 HOH HOH . N 5 HOH A 199 599 230 HOH HOH . N 5 HOH A 200 600 270 HOH HOH . N 5 HOH A 201 601 280 HOH HOH . N 5 HOH A 202 602 112 HOH HOH . N 5 HOH A 203 603 131 HOH HOH . N 5 HOH A 204 604 200 HOH HOH . N 5 HOH A 205 605 133 HOH HOH . N 5 HOH A 206 606 242 HOH HOH . N 5 HOH A 207 607 203 HOH HOH . N 5 HOH A 208 608 234 HOH HOH . N 5 HOH A 209 609 268 HOH HOH . N 5 HOH A 210 610 296 HOH HOH . N 5 HOH A 211 611 246 HOH HOH . N 5 HOH A 212 612 253 HOH HOH . N 5 HOH A 213 613 236 HOH HOH . N 5 HOH A 214 614 269 HOH HOH . N 5 HOH A 215 615 215 HOH HOH . N 5 HOH A 216 616 83 HOH HOH . N 5 HOH A 217 617 212 HOH HOH . N 5 HOH A 218 618 87 HOH HOH . N 5 HOH A 219 619 260 HOH HOH . N 5 HOH A 220 620 277 HOH HOH . N 5 HOH A 221 621 288 HOH HOH . N 5 HOH A 222 622 176 HOH HOH . N 5 HOH A 223 623 144 HOH HOH . N 5 HOH A 224 624 217 HOH HOH . N 5 HOH A 225 625 170 HOH HOH . N 5 HOH A 226 626 259 HOH HOH . N 5 HOH A 227 627 219 HOH HOH . N 5 HOH A 228 628 218 HOH HOH . N 5 HOH A 229 629 225 HOH HOH . N 5 HOH A 230 630 289 HOH HOH . N 5 HOH A 231 631 175 HOH HOH . N 5 HOH A 232 632 247 HOH HOH . N 5 HOH A 233 633 211 HOH HOH . N 5 HOH A 234 634 177 HOH HOH . N 5 HOH A 235 635 276 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . J 3 54.982 43.387 0.776 1 41.21 ? C1 EDO 309 A 1 HETATM 2 O O1 EDO . . . J 3 54.484 44.003 1.97 1 42.18 ? O1 EDO 309 A 1 HETATM 3 C C2 EDO . . . J 3 54.592 44.12 -0.506 1 40.79 ? C2 EDO 309 A 1 HETATM 4 O O2 EDO . . . J 3 55.198 43.484 -1.646 1 39.84 ? O2 EDO 309 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 4 #