data_5DO6
#
_model_server_result.job_id            Un6A_in-zpJaDWDKFWj94A 
_model_server_result.datetime_utc      '2025-04-04 01:40:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5do6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":105}' 
#
_entry.id    5DO6 
#
_exptl.entry_id    5DO6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5DO6 
_cell.length_a            55.9 
_cell.length_b            100.99 
_cell.length_c            53.48 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5DO6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 55.9 0 26.74 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 3 A CYS 3 1_555 A SG CYS 19 A CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
disulf ? disulf2 A SG CYS 12 A CYS 12 1_555 A SG CYS 37 A CYS 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf3 A SG CYS 41 A CYS 41 1_555 A SG CYS 49 A CYS 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf4 A SG CYS 50 A CYS 50 1_555 A SG CYS 55 A CYS 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
disulf ? disulf5 B SG CYS 3 B CYS 3 1_555 B SG CYS 19 B CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf6 B SG CYS 12 B CYS 12 1_555 B SG CYS 37 B CYS 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf7 B SG CYS 41 B CYS 41 1_555 B SG CYS 49 B CYS 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf8 B SG CYS 50 B CYS 50 1_555 B SG CYS 55 B CYS 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     5DO6 
_atom_sites.fract_transf_matrix[1][1]    0.017889 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009902 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018699 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 IOD A 1 101 1 IOD IOD . 
D 2 IOD A 1 102 2 IOD IOD . 
E 2 IOD A 1 103 3 IOD IOD . 
F 2 IOD A 1 104 4 IOD IOD . 
G 3 EDO A 1 105 4 EDO EDO . 
H 2 IOD B 1 101 5 IOD IOD . 
I 4 PGO B 1 102 1 PGO PGO . 
J 5 HOH A 1 201 13 HOH HOH . 
J 5 HOH A 2 202 158 HOH HOH . 
J 5 HOH A 3 203 92 HOH HOH . 
J 5 HOH A 4 204 141 HOH HOH . 
J 5 HOH A 5 205 21 HOH HOH . 
J 5 HOH A 6 206 131 HOH HOH . 
J 5 HOH A 7 207 79 HOH HOH . 
J 5 HOH A 8 208 97 HOH HOH . 
J 5 HOH A 9 209 43 HOH HOH . 
J 5 HOH A 10 210 121 HOH HOH . 
J 5 HOH A 11 211 68 HOH HOH . 
J 5 HOH A 12 212 7 HOH HOH . 
J 5 HOH A 13 213 37 HOH HOH . 
J 5 HOH A 14 214 20 HOH HOH . 
J 5 HOH A 15 215 74 HOH HOH . 
J 5 HOH A 16 216 35 HOH HOH . 
J 5 HOH A 17 217 45 HOH HOH . 
J 5 HOH A 18 218 11 HOH HOH . 
J 5 HOH A 19 219 28 HOH HOH . 
J 5 HOH A 20 220 42 HOH HOH . 
J 5 HOH A 21 221 122 HOH HOH . 
J 5 HOH A 22 222 1 HOH HOH . 
J 5 HOH A 23 223 17 HOH HOH . 
J 5 HOH A 24 224 135 HOH HOH . 
J 5 HOH A 25 225 6 HOH HOH . 
J 5 HOH A 26 226 12 HOH HOH . 
J 5 HOH A 27 227 46 HOH HOH . 
J 5 HOH A 28 228 8 HOH HOH . 
J 5 HOH A 29 229 94 HOH HOH . 
J 5 HOH A 30 230 29 HOH HOH . 
J 5 HOH A 31 231 59 HOH HOH . 
J 5 HOH A 32 232 54 HOH HOH . 
J 5 HOH A 33 233 10 HOH HOH . 
J 5 HOH A 34 234 3 HOH HOH . 
J 5 HOH A 35 235 83 HOH HOH . 
J 5 HOH A 36 236 109 HOH HOH . 
J 5 HOH A 37 237 2 HOH HOH . 
J 5 HOH A 38 238 16 HOH HOH . 
J 5 HOH A 39 239 110 HOH HOH . 
J 5 HOH A 40 240 25 HOH HOH . 
J 5 HOH A 41 241 86 HOH HOH . 
J 5 HOH A 42 242 36 HOH HOH . 
J 5 HOH A 43 243 24 HOH HOH . 
J 5 HOH A 44 244 26 HOH HOH . 
J 5 HOH A 45 245 102 HOH HOH . 
J 5 HOH A 46 246 14 HOH HOH . 
J 5 HOH A 47 247 82 HOH HOH . 
J 5 HOH A 48 248 23 HOH HOH . 
J 5 HOH A 49 249 38 HOH HOH . 
J 5 HOH A 50 250 123 HOH HOH . 
J 5 HOH A 51 251 111 HOH HOH . 
J 5 HOH A 52 252 76 HOH HOH . 
J 5 HOH A 53 253 87 HOH HOH . 
J 5 HOH A 54 254 90 HOH HOH . 
J 5 HOH A 55 255 144 HOH HOH . 
J 5 HOH A 56 256 19 HOH HOH . 
J 5 HOH A 57 257 32 HOH HOH . 
J 5 HOH A 58 258 151 HOH HOH . 
J 5 HOH A 59 259 137 HOH HOH . 
J 5 HOH A 60 260 67 HOH HOH . 
J 5 HOH A 61 261 75 HOH HOH . 
J 5 HOH A 62 262 63 HOH HOH . 
J 5 HOH A 63 263 93 HOH HOH . 
J 5 HOH A 64 264 72 HOH HOH . 
J 5 HOH A 65 265 165 HOH HOH . 
J 5 HOH A 66 266 128 HOH HOH . 
J 5 HOH A 67 267 113 HOH HOH . 
J 5 HOH A 68 268 99 HOH HOH . 
J 5 HOH A 69 269 114 HOH HOH . 
J 5 HOH A 70 270 148 HOH HOH . 
J 5 HOH A 71 271 117 HOH HOH . 
J 5 HOH A 72 272 132 HOH HOH . 
J 5 HOH A 73 273 157 HOH HOH . 
J 5 HOH A 74 274 52 HOH HOH . 
J 5 HOH A 75 275 124 HOH HOH . 
J 5 HOH A 76 276 66 HOH HOH . 
J 5 HOH A 77 277 60 HOH HOH . 
J 5 HOH A 78 278 145 HOH HOH . 
J 5 HOH A 79 279 143 HOH HOH . 
J 5 HOH A 80 280 34 HOH HOH . 
J 5 HOH A 81 281 88 HOH HOH . 
J 5 HOH A 82 282 164 HOH HOH . 
J 5 HOH A 83 283 127 HOH HOH . 
J 5 HOH A 84 284 150 HOH HOH . 
J 5 HOH A 85 285 156 HOH HOH . 
J 5 HOH A 86 286 149 HOH HOH . 
J 5 HOH A 87 287 89 HOH HOH . 
J 5 HOH A 88 288 139 HOH HOH . 
J 5 HOH A 89 289 101 HOH HOH . 
J 5 HOH A 90 290 125 HOH HOH . 
J 5 HOH A 91 291 103 HOH HOH . 
J 5 HOH A 92 292 134 HOH HOH . 
J 5 HOH A 93 293 100 HOH HOH . 
J 5 HOH A 94 294 112 HOH HOH . 
J 5 HOH A 95 295 130 HOH HOH . 
K 5 HOH B 1 201 57 HOH HOH . 
K 5 HOH B 2 202 51 HOH HOH . 
K 5 HOH B 3 203 58 HOH HOH . 
K 5 HOH B 4 204 80 HOH HOH . 
K 5 HOH B 5 205 147 HOH HOH . 
K 5 HOH B 6 206 55 HOH HOH . 
K 5 HOH B 7 207 64 HOH HOH . 
K 5 HOH B 8 208 95 HOH HOH . 
K 5 HOH B 9 209 71 HOH HOH . 
K 5 HOH B 10 210 77 HOH HOH . 
K 5 HOH B 11 211 162 HOH HOH . 
K 5 HOH B 12 212 27 HOH HOH . 
K 5 HOH B 13 213 33 HOH HOH . 
K 5 HOH B 14 214 30 HOH HOH . 
K 5 HOH B 15 215 15 HOH HOH . 
K 5 HOH B 16 216 9 HOH HOH . 
K 5 HOH B 17 217 18 HOH HOH . 
K 5 HOH B 18 218 104 HOH HOH . 
K 5 HOH B 19 219 119 HOH HOH . 
K 5 HOH B 20 220 140 HOH HOH . 
K 5 HOH B 21 221 39 HOH HOH . 
K 5 HOH B 22 222 138 HOH HOH . 
K 5 HOH B 23 223 61 HOH HOH . 
K 5 HOH B 24 224 85 HOH HOH . 
K 5 HOH B 25 225 48 HOH HOH . 
K 5 HOH B 26 226 4 HOH HOH . 
K 5 HOH B 27 227 70 HOH HOH . 
K 5 HOH B 28 228 5 HOH HOH . 
K 5 HOH B 29 229 81 HOH HOH . 
K 5 HOH B 30 230 44 HOH HOH . 
K 5 HOH B 31 231 96 HOH HOH . 
K 5 HOH B 32 232 31 HOH HOH . 
K 5 HOH B 33 233 53 HOH HOH . 
K 5 HOH B 34 234 56 HOH HOH . 
K 5 HOH B 35 235 78 HOH HOH . 
K 5 HOH B 36 236 133 HOH HOH . 
K 5 HOH B 37 237 146 HOH HOH . 
K 5 HOH B 38 238 49 HOH HOH . 
K 5 HOH B 39 239 65 HOH HOH . 
K 5 HOH B 40 240 47 HOH HOH . 
K 5 HOH B 41 241 41 HOH HOH . 
K 5 HOH B 42 242 40 HOH HOH . 
K 5 HOH B 43 243 22 HOH HOH . 
K 5 HOH B 44 244 129 HOH HOH . 
K 5 HOH B 45 245 50 HOH HOH . 
K 5 HOH B 46 246 153 HOH HOH . 
K 5 HOH B 47 247 73 HOH HOH . 
K 5 HOH B 48 248 161 HOH HOH . 
K 5 HOH B 49 249 154 HOH HOH . 
K 5 HOH B 50 250 116 HOH HOH . 
K 5 HOH B 51 251 98 HOH HOH . 
K 5 HOH B 52 252 106 HOH HOH . 
K 5 HOH B 53 253 105 HOH HOH . 
K 5 HOH B 54 254 91 HOH HOH . 
K 5 HOH B 55 255 115 HOH HOH . 
K 5 HOH B 56 256 136 HOH HOH . 
K 5 HOH B 57 257 62 HOH HOH . 
K 5 HOH B 58 258 159 HOH HOH . 
K 5 HOH B 59 259 108 HOH HOH . 
K 5 HOH B 60 260 163 HOH HOH . 
K 5 HOH B 61 261 118 HOH HOH . 
K 5 HOH B 62 262 69 HOH HOH . 
K 5 HOH B 63 263 160 HOH HOH . 
K 5 HOH B 64 264 120 HOH HOH . 
K 5 HOH B 65 265 155 HOH HOH . 
K 5 HOH B 66 266 84 HOH HOH . 
K 5 HOH B 67 267 107 HOH HOH . 
K 5 HOH B 68 268 152 HOH HOH . 
K 5 HOH B 69 269 126 HOH HOH . 
K 5 HOH B 70 270 142 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . G 3 12.124 53.809 15.12 1 33.84 ? C1 EDO 105 A 1 
HETATM 2 O O1 EDO . . . G 3 13.08 54.656 15.77 1 23.23 ? O1 EDO 105 A 1 
HETATM 3 C C2 EDO . . . G 3 11.332 54.63 14.11 1 28.91 ? C2 EDO 105 A 1 
HETATM 4 O O2 EDO . . . G 3 11.947 54.525 12.821 1 29.41 ? O2 EDO 105 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#