data_5DOQ
#
_model_server_result.job_id            JMiVxzy-nLqt4iXqDTjq-Q 
_model_server_result.datetime_utc      '2024-11-21 14:12:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5doq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":501}' 
#
_entry.id    5DOQ 
#
_exptl.entry_id    5DOQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              618.503 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'HEME B/C' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5DOQ 
_cell.length_a            110.06 
_cell.length_b            120.86 
_cell.length_c            122.72 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5DOQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 21 A HIS 21 1_555 E FE HEB . A HEB 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.782 ? 
metalc ? metalc2 A OE2 GLU 101 A GLU 101 1_555 E FE HEB . A HEB 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? 
metalc ? metalc3 A NE2 HIS 186 A HIS 186 1_555 D FE HEB . A HEB 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc4 A SD MET 325 A MET 325 1_555 D FE HEB . A HEB 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.581 ? 
metalc ? metalc5 A OE2 GLU 378 A GLU 378 1_555 F FE HDD . A HDD 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? 
#
_chem_comp.formula           'C34 H34 Fe N4 O4' 
_chem_comp.formula_weight    618.503 
_chem_comp.id                HEB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'HEME B/C' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'HYBRID BETWEEN B AND C TYPE HEMES (PROTOPORPHYRIN IX CONTAINING FE)' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE NA HEB sing 213 n n 
FE NB HEB sing 214 n n 
FE NC HEB sing 215 n n 
FE ND HEB sing 216 n n 
CHA C1A HEB doub 217 n n 
CHA C4D HEB sing 218 n n 
CHA HHA HEB sing 219 n n 
CHB C4A HEB doub 220 n n 
CHB C1B HEB sing 221 n n 
CHB HHB HEB sing 222 n n 
CHC C4B HEB doub 223 n n 
CHC C1C HEB sing 224 n n 
CHC HHC HEB sing 225 n n 
CHD C4C HEB sing 226 n n 
CHD C1D HEB doub 227 n n 
CHD HHD HEB sing 228 n n 
NA C1A HEB sing 229 n n 
NA C4A HEB sing 230 n n 
C1A C2A HEB sing 231 n n 
C2A C3A HEB doub 232 n n 
C2A CAA HEB sing 233 n n 
C3A C4A HEB sing 234 n n 
C3A CMA HEB sing 235 n n 
CMA HMA1 HEB sing 236 n n 
CMA HMA2 HEB sing 237 n n 
CMA HMA3 HEB sing 238 n n 
CAA CBA HEB sing 239 n n 
CAA HAA1 HEB sing 240 n n 
CAA HAA2 HEB sing 241 n n 
CBA CGA HEB sing 242 n n 
CBA HBA1 HEB sing 243 n n 
CBA HBA2 HEB sing 244 n n 
CGA O1A HEB doub 245 n n 
CGA O2A HEB sing 246 n n 
O2A H2A HEB sing 247 n n 
NB C1B HEB doub 248 n n 
NB C4B HEB sing 249 n n 
C1B C2B HEB sing 250 n n 
C2B C3B HEB doub 251 n n 
C2B CMB HEB sing 252 n n 
C3B C4B HEB sing 253 n n 
C3B CAB HEB sing 254 n n 
CMB HMB1 HEB sing 255 n n 
CMB HMB2 HEB sing 256 n n 
CMB HMB3 HEB sing 257 n n 
CAB CBB HEB sing 258 n n 
CAB HAB HEB sing 259 n n 
CAB HAB2 HEB sing 260 n n 
CBB HBB1 HEB sing 261 n n 
CBB HBB2 HEB sing 262 n n 
CBB HBB3 HEB sing 263 n n 
NC C1C HEB sing 264 n y 
NC C4C HEB sing 265 n y 
C1C C2C HEB doub 266 n y 
C2C C3C HEB sing 267 n y 
C2C CMC HEB sing 268 n n 
C3C C4C HEB doub 269 n y 
C3C CAC HEB sing 270 n n 
CMC HMC1 HEB sing 271 n n 
CMC HMC2 HEB sing 272 n n 
CMC HMC3 HEB sing 273 n n 
CAC CBC HEB doub 274 n n 
CAC HAC HEB sing 275 n n 
CBC HBC1 HEB sing 276 n n 
CBC HBC2 HEB sing 277 n n 
ND C1D HEB sing 278 n n 
ND C4D HEB doub 279 n n 
C1D C2D HEB sing 280 n n 
C2D C3D HEB doub 281 n n 
C2D CMD HEB sing 282 n n 
C3D C4D HEB sing 283 n n 
C3D CAD HEB sing 284 n n 
CMD HMD1 HEB sing 285 n n 
CMD HMD2 HEB sing 286 n n 
CMD HMD3 HEB sing 287 n n 
CAD CBD HEB sing 288 n n 
CAD HAD1 HEB sing 289 n n 
CAD HAD2 HEB sing 290 n n 
CBD CGD HEB sing 291 n n 
CBD HBD1 HEB sing 292 n n 
CBD HBD2 HEB sing 293 n n 
CGD O1D HEB doub 294 n n 
CGD O2D HEB sing 295 n n 
O2D H2D HEB sing 296 n n 
#
_atom_sites.entry_id                     5DOQ 
_atom_sites.fract_transf_matrix[1][1]    0.009086 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008274 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008149 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 HEB A 1 501 903 HEB HEB . 
E 4 HEB A 1 502 904 HEB HEB . 
F 5 HDD A 1 503 1 HDD HDD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE HEB . . . D 4 -26.194 -0.763 52.495 1 75.52 ? FE HEB 501 A 1 
HETATM 2 C CHA HEB . . . D 4 -23.769 -1.619 55.15 1 75.52 ? CHA HEB 501 A 1 
HETATM 3 C CHB HEB . . . D 4 -28.843 -2.464 54.385 1 75.52 ? CHB HEB 501 A 1 
HETATM 4 C CHC HEB . . . D 4 -28.532 0.114 49.885 1 75.52 ? CHC HEB 501 A 1 
HETATM 5 C CHD HEB . . . D 4 -23.498 1.021 50.511 1 75.52 ? CHD HEB 501 A 1 
HETATM 6 N NA HEB . . . D 4 -26.226 -1.787 54.337 1 75.52 ? NA HEB 501 A 1 
HETATM 7 C C1A HEB . . . D 4 -25.15 -2.026 55.249 1 75.52 ? C1A HEB 501 A 1 
HETATM 8 C C2A HEB . . . D 4 -25.753 -2.702 56.188 1 75.52 ? C2A HEB 501 A 1 
HETATM 9 C C3A HEB . . . D 4 -26.962 -2.942 56.089 1 75.52 ? C3A HEB 501 A 1 
HETATM 10 C C4A HEB . . . D 4 -27.48 -2.436 54.947 1 75.52 ? C4A HEB 501 A 1 
HETATM 11 C CMA HEB . . . D 4 -27.835 -3.71 57.071 1 75.52 ? CMA HEB 501 A 1 
HETATM 12 C CAA HEB . . . D 4 -24.903 -3.154 57.392 1 75.52 ? CAA HEB 501 A 1 
HETATM 13 C CBA HEB . . . D 4 -24.161 -4.46 57.096 1 75.52 ? CBA HEB 501 A 1 
HETATM 14 C CGA HEB . . . D 4 -23.281 -4.899 58.269 1 75.52 ? CGA HEB 501 A 1 
HETATM 15 O O1A HEB . . . D 4 -22.745 -6.039 58.235 1 75.52 ? O1A HEB 501 A 1 
HETATM 16 O O2A HEB . . . D 4 -23.066 -4.158 59.274 1 75.52 ? O2A HEB 501 A 1 
HETATM 17 N NB HEB . . . D 4 -28.285 -1.112 52.197 1 75.52 ? NB HEB 501 A 1 
HETATM 18 C C1B HEB . . . D 4 -29.185 -1.833 53.097 1 75.52 ? C1B HEB 501 A 1 
HETATM 19 C C2B HEB . . . D 4 -30.283 -1.73 52.421 1 75.52 ? C2B HEB 501 A 1 
HETATM 20 C C3B HEB . . . D 4 -30.307 -1.124 51.337 1 75.52 ? C3B HEB 501 A 1 
HETATM 21 C C4B HEB . . . D 4 -29.058 -0.644 51.021 1 75.52 ? C4B HEB 501 A 1 
HETATM 22 C CMB HEB . . . D 4 -31.512 -2.369 53.023 1 75.52 ? CMB HEB 501 A 1 
HETATM 23 C CAB HEB . . . D 4 -31.548 -0.955 50.466 1 75.52 ? CAB HEB 501 A 1 
HETATM 24 C CBB HEB . . . D 4 -31.549 0.324 49.655 1 75.52 ? CBB HEB 501 A 1 
HETATM 25 N NC HEB . . . D 4 -25.94 0.332 50.656 1 75.52 ? NC HEB 501 A 1 
HETATM 26 C C1C HEB . . . D 4 -27.1 0.565 49.723 1 75.52 ? C1C HEB 501 A 1 
HETATM 27 C C2C HEB . . . D 4 -26.584 1.206 48.811 1 75.52 ? C2C HEB 501 A 1 
HETATM 28 C C3C HEB . . . D 4 -25.39 1.48 48.846 1 75.52 ? C3C HEB 501 A 1 
HETATM 29 C C4C HEB . . . D 4 -24.778 0.963 50.043 1 75.52 ? C4C HEB 501 A 1 
HETATM 30 C CMC HEB . . . D 4 -27.444 1.637 47.635 1 75.52 ? CMC HEB 501 A 1 
HETATM 31 C CAC HEB . . . D 4 -24.676 2.261 47.766 1 75.52 ? CAC HEB 501 A 1 
HETATM 32 C CBC HEB . . . D 4 -23.278 2.707 48.129 1 75.52 ? CBC HEB 501 A 1 
HETATM 33 N ND HEB . . . D 4 -23.934 -0.305 52.73 1 75.52 ? ND HEB 501 A 1 
HETATM 34 C C1D HEB . . . D 4 -23.113 0.394 51.799 1 75.52 ? C1D HEB 501 A 1 
HETATM 35 C C2D HEB . . . D 4 -21.988 0.292 52.476 1 75.52 ? C2D HEB 501 A 1 
HETATM 36 C C3D HEB . . . D 4 -21.889 -0.354 53.687 1 75.52 ? C3D HEB 501 A 1 
HETATM 37 C C4D HEB . . . D 4 -23.224 -0.827 53.957 1 75.52 ? C4D HEB 501 A 1 
HETATM 38 C CMD HEB . . . D 4 -20.761 0.92 51.888 1 75.52 ? CMD HEB 501 A 1 
HETATM 39 C CAD HEB . . . D 4 -20.688 -0.574 54.599 1 75.52 ? CAD HEB 501 A 1 
HETATM 40 C CBD HEB . . . D 4 -20.037 -1.918 54.316 1 75.52 ? CBD HEB 501 A 1 
HETATM 41 C CGD HEB . . . D 4 -20.983 -3.07 54.581 1 75.52 ? CGD HEB 501 A 1 
HETATM 42 O O1D HEB . . . D 4 -21.648 -3.569 53.643 1 75.52 ? O1D HEB 501 A 1 
HETATM 43 O O2D HEB . . . D 4 -21.1 -3.51 55.749 1 75.52 ? O2D HEB 501 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           43 
#