data_5DOQ
#
_model_server_result.job_id            3qO1hYUntzz42XOpJ1VRLQ 
_model_server_result.datetime_utc      '2024-11-21 14:23:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5doq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":502}' 
#
_entry.id    5DOQ 
#
_exptl.entry_id    5DOQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              618.503 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'HEME B/C' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5DOQ 
_cell.length_a            110.06 
_cell.length_b            120.86 
_cell.length_c            122.72 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5DOQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 21 A HIS 21 1_555 E FE HEB . A HEB 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.782 ? 
metalc ? metalc2 A OE2 GLU 101 A GLU 101 1_555 E FE HEB . A HEB 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? 
metalc ? metalc3 A NE2 HIS 186 A HIS 186 1_555 D FE HEB . A HEB 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc4 A SD MET 325 A MET 325 1_555 D FE HEB . A HEB 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.581 ? 
metalc ? metalc5 A OE2 GLU 378 A GLU 378 1_555 F FE HDD . A HDD 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? 
#
_chem_comp.formula           'C34 H34 Fe N4 O4' 
_chem_comp.formula_weight    618.503 
_chem_comp.id                HEB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'HEME B/C' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'HYBRID BETWEEN B AND C TYPE HEMES (PROTOPORPHYRIN IX CONTAINING FE)' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE NA HEB sing 213 n n 
FE NB HEB sing 214 n n 
FE NC HEB sing 215 n n 
FE ND HEB sing 216 n n 
CHA C1A HEB doub 217 n n 
CHA C4D HEB sing 218 n n 
CHA HHA HEB sing 219 n n 
CHB C4A HEB doub 220 n n 
CHB C1B HEB sing 221 n n 
CHB HHB HEB sing 222 n n 
CHC C4B HEB doub 223 n n 
CHC C1C HEB sing 224 n n 
CHC HHC HEB sing 225 n n 
CHD C4C HEB sing 226 n n 
CHD C1D HEB doub 227 n n 
CHD HHD HEB sing 228 n n 
NA C1A HEB sing 229 n n 
NA C4A HEB sing 230 n n 
C1A C2A HEB sing 231 n n 
C2A C3A HEB doub 232 n n 
C2A CAA HEB sing 233 n n 
C3A C4A HEB sing 234 n n 
C3A CMA HEB sing 235 n n 
CMA HMA1 HEB sing 236 n n 
CMA HMA2 HEB sing 237 n n 
CMA HMA3 HEB sing 238 n n 
CAA CBA HEB sing 239 n n 
CAA HAA1 HEB sing 240 n n 
CAA HAA2 HEB sing 241 n n 
CBA CGA HEB sing 242 n n 
CBA HBA1 HEB sing 243 n n 
CBA HBA2 HEB sing 244 n n 
CGA O1A HEB doub 245 n n 
CGA O2A HEB sing 246 n n 
O2A H2A HEB sing 247 n n 
NB C1B HEB doub 248 n n 
NB C4B HEB sing 249 n n 
C1B C2B HEB sing 250 n n 
C2B C3B HEB doub 251 n n 
C2B CMB HEB sing 252 n n 
C3B C4B HEB sing 253 n n 
C3B CAB HEB sing 254 n n 
CMB HMB1 HEB sing 255 n n 
CMB HMB2 HEB sing 256 n n 
CMB HMB3 HEB sing 257 n n 
CAB CBB HEB sing 258 n n 
CAB HAB HEB sing 259 n n 
CAB HAB2 HEB sing 260 n n 
CBB HBB1 HEB sing 261 n n 
CBB HBB2 HEB sing 262 n n 
CBB HBB3 HEB sing 263 n n 
NC C1C HEB sing 264 n y 
NC C4C HEB sing 265 n y 
C1C C2C HEB doub 266 n y 
C2C C3C HEB sing 267 n y 
C2C CMC HEB sing 268 n n 
C3C C4C HEB doub 269 n y 
C3C CAC HEB sing 270 n n 
CMC HMC1 HEB sing 271 n n 
CMC HMC2 HEB sing 272 n n 
CMC HMC3 HEB sing 273 n n 
CAC CBC HEB doub 274 n n 
CAC HAC HEB sing 275 n n 
CBC HBC1 HEB sing 276 n n 
CBC HBC2 HEB sing 277 n n 
ND C1D HEB sing 278 n n 
ND C4D HEB doub 279 n n 
C1D C2D HEB sing 280 n n 
C2D C3D HEB doub 281 n n 
C2D CMD HEB sing 282 n n 
C3D C4D HEB sing 283 n n 
C3D CAD HEB sing 284 n n 
CMD HMD1 HEB sing 285 n n 
CMD HMD2 HEB sing 286 n n 
CMD HMD3 HEB sing 287 n n 
CAD CBD HEB sing 288 n n 
CAD HAD1 HEB sing 289 n n 
CAD HAD2 HEB sing 290 n n 
CBD CGD HEB sing 291 n n 
CBD HBD1 HEB sing 292 n n 
CBD HBD2 HEB sing 293 n n 
CGD O1D HEB doub 294 n n 
CGD O2D HEB sing 295 n n 
O2D H2D HEB sing 296 n n 
#
_atom_sites.entry_id                     5DOQ 
_atom_sites.fract_transf_matrix[1][1]    0.009086 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008274 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008149 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 HEB A 1 501 903 HEB HEB . 
E 4 HEB A 1 502 904 HEB HEB . 
F 5 HDD A 1 503 1 HDD HDD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE HEB . . . E 4 -7 -1.866 50.209 1 92.3 ? FE HEB 502 A 1 
HETATM 2 C CHA HEB . . . E 4 -4.618 -1.661 47.339 1 92.3 ? CHA HEB 502 A 1 
HETATM 3 C CHB HEB . . . E 4 -4.214 -1.93 52.574 1 92.3 ? CHB HEB 502 A 1 
HETATM 4 C CHC HEB . . . E 4 -9.4 -2.1 52.961 1 92.3 ? CHC HEB 502 A 1 
HETATM 5 C CHD HEB . . . E 4 -9.931 -1.856 47.825 1 92.3 ? CHD HEB 502 A 1 
HETATM 6 N NA HEB . . . E 4 -4.91 -1.81 49.943 1 92.3 ? NA HEB 502 A 1 
HETATM 7 C C1A HEB . . . E 4 -4.154 -1.722 48.719 1 92.3 ? C1A HEB 502 A 1 
HETATM 8 C C2A HEB . . . E 4 -2.936 -1.718 49.21 1 92.3 ? C2A HEB 502 A 1 
HETATM 9 C C3A HEB . . . E 4 -2.748 -1.767 50.438 1 92.3 ? C3A HEB 502 A 1 
HETATM 10 C C4A HEB . . . E 4 -3.913 -1.841 51.125 1 92.3 ? C4A HEB 502 A 1 
HETATM 11 C CMA HEB . . . E 4 -1.391 -1.759 51.136 1 92.3 ? CMA HEB 502 A 1 
HETATM 12 C CAA HEB . . . E 4 -1.75 -1.605 48.236 1 92.3 ? CAA HEB 502 A 1 
HETATM 13 C CBA HEB . . . E 4 -1.083 -2.94 47.933 1 92.3 ? CBA HEB 502 A 1 
HETATM 14 C CGA HEB . . . E 4 0.216 -2.693 47.171 1 92.3 ? CGA HEB 502 A 1 
HETATM 15 O O1A HEB . . . E 4 0.602 -3.516 46.29 1 92.3 ? O1A HEB 502 A 1 
HETATM 16 O O2A HEB . . . E 4 0.916 -1.666 47.414 1 92.3 ? O2A HEB 502 A 1 
HETATM 17 N NB HEB . . . E 4 -6.841 -1.998 52.342 1 92.3 ? NB HEB 502 A 1 
HETATM 18 C C1B HEB . . . E 4 -5.592 -2.002 53.114 1 92.3 ? C1B HEB 502 A 1 
HETATM 19 C C2B HEB . . . E 4 -6.095 -2.08 54.309 1 92.3 ? C2B HEB 502 A 1 
HETATM 20 C C3B HEB . . . E 4 -7.324 -2.116 54.472 1 92.3 ? C3B HEB 502 A 1 
HETATM 21 C C4B HEB . . . E 4 -7.984 -2.082 53.284 1 92.3 ? C4B HEB 502 A 1 
HETATM 22 C CMB HEB . . . E 4 -5.15 -2.112 55.485 1 92.3 ? CMB HEB 502 A 1 
HETATM 23 C CAB HEB . . . E 4 -8.049 -2.213 55.797 1 92.3 ? CAB HEB 502 A 1 
HETATM 24 C CBB HEB . . . E 4 -8.087 -3.675 56.167 1 92.3 ? CBB HEB 502 A 1 
HETATM 25 N NC HEB . . . E 4 -9.145 -1.956 50.254 1 92.3 ? NC HEB 502 A 1 
HETATM 26 C C1C HEB . . . E 4 -9.923 -2.047 51.548 1 92.3 ? C1C HEB 502 A 1 
HETATM 27 C C2C HEB . . . E 4 -11.081 -2.063 51.15 1 92.3 ? C2C HEB 502 A 1 
HETATM 28 C C3C HEB . . . E 4 -11.32 -2.01 49.948 1 92.3 ? C3C HEB 502 A 1 
HETATM 29 C C4C HEB . . . E 4 -10.118 -1.931 49.176 1 92.3 ? C4C HEB 502 A 1 
HETATM 30 C CMC HEB . . . E 4 -12.229 -2.15 52.14 1 92.3 ? CMC HEB 502 A 1 
HETATM 31 C CAC HEB . . . E 4 -12.695 -2.007 49.31 1 92.3 ? CAC HEB 502 A 1 
HETATM 32 C CBC HEB . . . E 4 -13.401 -3.349 49.239 1 92.3 ? CBC HEB 502 A 1 
HETATM 33 N ND HEB . . . E 4 -7.316 -1.777 47.895 1 92.3 ? ND HEB 502 A 1 
HETATM 34 C C1D HEB . . . E 4 -8.577 -1.78 47.213 1 92.3 ? C1D HEB 502 A 1 
HETATM 35 C C2D HEB . . . E 4 -8.125 -1.703 45.969 1 92.3 ? C2D HEB 502 A 1 
HETATM 36 C C3D HEB . . . E 4 -6.782 -1.65 45.673 1 92.3 ? C3D HEB 502 A 1 
HETATM 37 C C4D HEB . . . E 4 -6.114 -1.686 46.97 1 92.3 ? C4D HEB 502 A 1 
HETATM 38 C CMD HEB . . . E 4 -9.139 -1.675 44.86 1 92.3 ? CMD HEB 502 A 1 
HETATM 39 C CAD HEB . . . E 4 -6.079 -1.54 44.324 1 92.3 ? CAD HEB 502 A 1 
HETATM 40 C CBD HEB . . . E 4 -5.628 -0.099 44.11 1 92.3 ? CBD HEB 502 A 1 
HETATM 41 C CGD HEB . . . E 4 -6.762 0.898 44.352 1 92.3 ? CGD HEB 502 A 1 
HETATM 42 O O1D HEB . . . E 4 -7.044 1.24 45.531 1 92.3 ? O1D HEB 502 A 1 
HETATM 43 O O2D HEB . . . E 4 -7.414 1.38 43.385 1 92.3 ? O2D HEB 502 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           269 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#