data_5DP3 # _model_server_result.job_id SUeUPjwtnEuKmbx9O16Xtw _model_server_result.datetime_utc '2024-11-10 01:23:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dp3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5DP3 # _exptl.entry_id 5DP3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 358.431 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ethyl (4S)-5-[(3S)-2-oxopyrrolidin-3-yl]-4-[(3-phenylpropanoyl)amino]pent-2-enoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5DP3 _cell.length_a 64.623 _cell.length_b 64.845 _cell.length_c 75.366 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DP3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 148 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 147 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C14 _struct_conn.ptnr2_label_comp_id 5GH _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 5GH _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.772 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H26 N2 O4' _chem_comp.formula_weight 358.431 _chem_comp.id 5GH _chem_comp.mon_nstd_flag . _chem_comp.name 'ethyl (4S)-5-[(3S)-2-oxopyrrolidin-3-yl]-4-[(3-phenylpropanoyl)amino]pent-2-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C15 C14 5GH doub 1 z n C14 C10 5GH sing 2 n n C10 C11 5GH sing 3 n n C10 N 5GH sing 4 n n C11 C12 5GH sing 5 n n O1 C13 5GH doub 6 n n C12 C13 5GH sing 7 n n C12 C26 5GH sing 8 n n C13 N1 5GH sing 9 n n C26 C25 5GH sing 10 n n N1 C25 5GH sing 11 n n N1 H1 5GH sing 12 n n N H2 5GH sing 13 n n C10 H5 5GH sing 14 n n C11 H6 5GH sing 15 n n C11 H7 5GH sing 16 n n C12 H8 5GH sing 17 n n C25 H9 5GH sing 18 n n C25 H10 5GH sing 19 n n C26 H11 5GH sing 20 n n C26 H12 5GH sing 21 n n C14 H13 5GH sing 22 n n C15 H15 5GH sing 23 n n N C1 5GH sing 24 n n C1 C2 5GH sing 25 n n C2 C3 5GH sing 26 n n C3 C4 5GH sing 27 n n C4 C5 5GH sing 28 n y C5 C6 5GH doub 29 n y C6 C7 5GH sing 30 n y C7 C8 5GH doub 31 n y C8 C9 5GH sing 32 n y C9 C4 5GH doub 33 n y C1 O2 5GH doub 34 n n C15 C16 5GH sing 35 n n C16 O3 5GH sing 36 n n O3 C18 5GH sing 37 n n C18 C19 5GH sing 38 n n C16 O4 5GH doub 39 n n C2 H3 5GH sing 40 n n C2 H4 5GH sing 41 n n C3 H14 5GH sing 42 n n C3 H16 5GH sing 43 n n C5 H17 5GH sing 44 n n C6 H18 5GH sing 45 n n C7 H19 5GH sing 46 n n C8 H20 5GH sing 47 n n C9 H21 5GH sing 48 n n C18 H22 5GH sing 49 n n C18 H23 5GH sing 50 n n C19 H24 5GH sing 51 n n C19 H25 5GH sing 52 n n C19 H26 5GH sing 53 n n # _atom_sites.entry_id 5DP3 _atom_sites.fract_transf_matrix[1][1] 0.015474 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015421 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013269 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5GH A 1 201 1 5GH 104 . C 3 HOH A 1 301 82 HOH HOH . C 3 HOH A 2 302 126 HOH HOH . C 3 HOH A 3 303 77 HOH HOH . C 3 HOH A 4 304 80 HOH HOH . C 3 HOH A 5 305 13 HOH HOH . C 3 HOH A 6 306 39 HOH HOH . C 3 HOH A 7 307 118 HOH HOH . C 3 HOH A 8 308 17 HOH HOH . C 3 HOH A 9 309 75 HOH HOH . C 3 HOH A 10 310 63 HOH HOH . C 3 HOH A 11 311 122 HOH HOH . C 3 HOH A 12 312 15 HOH HOH . C 3 HOH A 13 313 110 HOH HOH . C 3 HOH A 14 314 94 HOH HOH . C 3 HOH A 15 315 1 HOH HOH . C 3 HOH A 16 316 11 HOH HOH . C 3 HOH A 17 317 111 HOH HOH . C 3 HOH A 18 318 41 HOH HOH . C 3 HOH A 19 319 18 HOH HOH . C 3 HOH A 20 320 106 HOH HOH . C 3 HOH A 21 321 37 HOH HOH . C 3 HOH A 22 322 116 HOH HOH . C 3 HOH A 23 323 120 HOH HOH . C 3 HOH A 24 324 115 HOH HOH . C 3 HOH A 25 325 16 HOH HOH . C 3 HOH A 26 326 8 HOH HOH . C 3 HOH A 27 327 36 HOH HOH . C 3 HOH A 28 328 40 HOH HOH . C 3 HOH A 29 329 14 HOH HOH . C 3 HOH A 30 330 50 HOH HOH . C 3 HOH A 31 331 92 HOH HOH . C 3 HOH A 32 332 23 HOH HOH . C 3 HOH A 33 333 81 HOH HOH . C 3 HOH A 34 334 76 HOH HOH . C 3 HOH A 35 335 61 HOH HOH . C 3 HOH A 36 336 84 HOH HOH . C 3 HOH A 37 337 10 HOH HOH . C 3 HOH A 38 338 2 HOH HOH . C 3 HOH A 39 339 6 HOH HOH . C 3 HOH A 40 340 32 HOH HOH . C 3 HOH A 41 341 25 HOH HOH . C 3 HOH A 42 342 21 HOH HOH . C 3 HOH A 43 343 55 HOH HOH . C 3 HOH A 44 344 47 HOH HOH . C 3 HOH A 45 345 48 HOH HOH . C 3 HOH A 46 346 54 HOH HOH . C 3 HOH A 47 347 45 HOH HOH . C 3 HOH A 48 348 59 HOH HOH . C 3 HOH A 49 349 3 HOH HOH . C 3 HOH A 50 350 22 HOH HOH . C 3 HOH A 51 351 60 HOH HOH . C 3 HOH A 52 352 9 HOH HOH . C 3 HOH A 53 353 56 HOH HOH . C 3 HOH A 54 354 95 HOH HOH . C 3 HOH A 55 355 86 HOH HOH . C 3 HOH A 56 356 79 HOH HOH . C 3 HOH A 57 357 44 HOH HOH . C 3 HOH A 58 358 12 HOH HOH . C 3 HOH A 59 359 30 HOH HOH . C 3 HOH A 60 360 128 HOH HOH . C 3 HOH A 61 361 42 HOH HOH . C 3 HOH A 62 362 28 HOH HOH . C 3 HOH A 63 363 53 HOH HOH . C 3 HOH A 64 364 121 HOH HOH . C 3 HOH A 65 365 52 HOH HOH . C 3 HOH A 66 366 20 HOH HOH . C 3 HOH A 67 367 31 HOH HOH . C 3 HOH A 68 368 112 HOH HOH . C 3 HOH A 69 369 64 HOH HOH . C 3 HOH A 70 370 4 HOH HOH . C 3 HOH A 71 371 33 HOH HOH . C 3 HOH A 72 372 85 HOH HOH . C 3 HOH A 73 373 123 HOH HOH . C 3 HOH A 74 374 27 HOH HOH . C 3 HOH A 75 375 83 HOH HOH . C 3 HOH A 76 376 43 HOH HOH . C 3 HOH A 77 377 96 HOH HOH . C 3 HOH A 78 378 62 HOH HOH . C 3 HOH A 79 379 99 HOH HOH . C 3 HOH A 80 380 24 HOH HOH . C 3 HOH A 81 381 114 HOH HOH . C 3 HOH A 82 382 38 HOH HOH . C 3 HOH A 83 383 35 HOH HOH . C 3 HOH A 84 384 19 HOH HOH . C 3 HOH A 85 385 119 HOH HOH . C 3 HOH A 86 386 5 HOH HOH . C 3 HOH A 87 387 68 HOH HOH . C 3 HOH A 88 388 26 HOH HOH . C 3 HOH A 89 389 117 HOH HOH . C 3 HOH A 90 390 102 HOH HOH . C 3 HOH A 91 391 73 HOH HOH . C 3 HOH A 92 392 29 HOH HOH . C 3 HOH A 93 393 90 HOH HOH . C 3 HOH A 94 394 74 HOH HOH . C 3 HOH A 95 395 113 HOH HOH . C 3 HOH A 96 396 66 HOH HOH . C 3 HOH A 97 397 108 HOH HOH . C 3 HOH A 98 398 97 HOH HOH . C 3 HOH A 99 399 46 HOH HOH . C 3 HOH A 100 400 7 HOH HOH . C 3 HOH A 101 401 69 HOH HOH . C 3 HOH A 102 402 67 HOH HOH . C 3 HOH A 103 403 130 HOH HOH . C 3 HOH A 104 404 93 HOH HOH . C 3 HOH A 105 405 103 HOH HOH . C 3 HOH A 106 406 65 HOH HOH . C 3 HOH A 107 407 109 HOH HOH . C 3 HOH A 108 408 105 HOH HOH . C 3 HOH A 109 409 72 HOH HOH . C 3 HOH A 110 410 100 HOH HOH . C 3 HOH A 111 411 57 HOH HOH . C 3 HOH A 112 412 101 HOH HOH . C 3 HOH A 113 413 87 HOH HOH . C 3 HOH A 114 414 89 HOH HOH . C 3 HOH A 115 415 124 HOH HOH . C 3 HOH A 116 416 104 HOH HOH . C 3 HOH A 117 417 78 HOH HOH . C 3 HOH A 118 418 58 HOH HOH . C 3 HOH A 119 419 91 HOH HOH . C 3 HOH A 120 420 127 HOH HOH . C 3 HOH A 121 421 51 HOH HOH . C 3 HOH A 122 422 34 HOH HOH . C 3 HOH A 123 423 88 HOH HOH . C 3 HOH A 124 424 129 HOH HOH . C 3 HOH A 125 425 70 HOH HOH . C 3 HOH A 126 426 125 HOH HOH . C 3 HOH A 127 427 107 HOH HOH . C 3 HOH A 128 428 98 HOH HOH . C 3 HOH A 129 429 131 HOH HOH . C 3 HOH A 130 430 49 HOH HOH . C 3 HOH A 131 431 71 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 5GH . . . B 2 2.063 8.083 -2.865 1 44.09 ? N1 5GH 201 A 1 HETATM 2 N N 5GH . . . B 2 6.492 6.195 -4.213 1 47.98 ? N 5GH 201 A 1 HETATM 3 C C10 5GH . . . B 2 5.908 6.897 -5.351 1 41.35 ? C10 5GH 201 A 1 HETATM 4 C C11 5GH . . . B 2 4.987 8.059 -4.887 1 41.82 ? C11 5GH 201 A 1 HETATM 5 C C12 5GH . . . B 2 4.246 7.833 -3.566 1 44.05 ? C12 5GH 201 A 1 HETATM 6 C C13 5GH . . . B 2 3.067 8.765 -3.404 1 44.94 ? C13 5GH 201 A 1 HETATM 7 O O1 5GH . . . B 2 3.037 9.959 -3.713 1 43.02 ? O1 5GH 201 A 1 HETATM 8 C C25 5GH . . . B 2 2.35 6.693 -2.599 1 44.34 ? C25 5GH 201 A 1 HETATM 9 C C26 5GH . . . B 2 3.641 6.432 -3.369 1 45.1 ? C26 5GH 201 A 1 HETATM 10 C C14 5GH . . . B 2 7.074 7.379 -6.268 1 37.16 ? C14 5GH 201 A 1 HETATM 11 C C15 5GH . . . B 2 8.114 6.278 -6.535 1 37.03 ? C15 5GH 201 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 11 #