data_5DP7 # _model_server_result.job_id Sc0LnzyVpGqSnyoBjXnWtw _model_server_result.datetime_utc '2024-11-24 16:57:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dp7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5DP7 # _exptl.entry_id 5DP7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 457.563 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ethyl (2Z,4S)-4-{[N-(3-methylbutanoyl)-L-phenylalanyl]amino}-5-[(3S)-2-oxopyrrolidin-3-yl]pent-2-enoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5DP7 _cell.length_a 64.203 _cell.length_b 65.319 _cell.length_c 76.443 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DP7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 148 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 147 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C14 _struct_conn.ptnr2_label_comp_id 5EC _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 5EC _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.748 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C25 H35 N3 O5' _chem_comp.formula_weight 457.563 _chem_comp.id 5EC _chem_comp.mon_nstd_flag . _chem_comp.name 'ethyl (2Z,4S)-4-{[N-(3-methylbutanoyl)-L-phenylalanyl]amino}-5-[(3S)-2-oxopyrrolidin-3-yl]pent-2-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 C16 5EC doub 1 n n C16 O2 5EC sing 2 n n C16 C15 5EC sing 3 n n O2 C18 5EC sing 4 n n C19 C18 5EC sing 5 n n C15 C14 5EC doub 6 z n C14 C10 5EC sing 7 n n C11 C10 5EC sing 8 n n C11 C12 5EC sing 9 n n C10 N 5EC sing 10 n n O1 C13 5EC doub 11 n n C13 C12 5EC sing 12 n n C13 N1 5EC sing 13 n n C12 C26 5EC sing 14 n n C26 C25 5EC sing 15 n n N C17 5EC sing 16 n n N1 C25 5EC sing 17 n n O4 C17 5EC doub 18 n n C17 C2 5EC sing 19 n n C3 C2 5EC sing 20 n n C3 C4 5EC sing 21 n n C2 N5 5EC sing 22 n n C5 C4 5EC doub 23 n y C5 C6 5EC sing 24 n y C4 C9 5EC sing 25 n y O C 5EC doub 26 n n N5 C 5EC sing 27 n n C6 C7 5EC doub 28 n y C9 C8 5EC doub 29 n y C C20 5EC sing 30 n n C8 C7 5EC sing 31 n y C20 C22 5EC sing 32 n n C24 C22 5EC sing 33 n n C22 C23 5EC sing 34 n n C2 H1 5EC sing 35 n n C3 H2 5EC sing 36 n n C3 H3 5EC sing 37 n n C5 H4 5EC sing 38 n n C6 H5 5EC sing 39 n n C7 H6 5EC sing 40 n n N1 H7 5EC sing 41 n n C8 H8 5EC sing 42 n n C20 H9 5EC sing 43 n n C20 H10 5EC sing 44 n n C22 H11 5EC sing 45 n n C23 H12 5EC sing 46 n n C23 H13 5EC sing 47 n n C23 H14 5EC sing 48 n n C24 H15 5EC sing 49 n n C24 H16 5EC sing 50 n n C24 H17 5EC sing 51 n n N5 H18 5EC sing 52 n n C9 H19 5EC sing 53 n n N H20 5EC sing 54 n n C10 H21 5EC sing 55 n n C11 H22 5EC sing 56 n n C11 H23 5EC sing 57 n n C12 H24 5EC sing 58 n n C25 H25 5EC sing 59 n n C25 H26 5EC sing 60 n n C26 H27 5EC sing 61 n n C26 H28 5EC sing 62 n n C14 H29 5EC sing 63 n n C15 H31 5EC sing 64 n n C18 H33 5EC sing 65 n n C18 H34 5EC sing 66 n n C19 H35 5EC sing 67 n n C19 H36 5EC sing 68 n n C19 H37 5EC sing 69 n n # _atom_sites.entry_id 5DP7 _atom_sites.fract_transf_matrix[1][1] 0.015576 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015309 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013082 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5EC A 1 201 1 5EC 121 . C 3 HOH A 1 301 54 HOH HOH . C 3 HOH A 2 302 67 HOH HOH . C 3 HOH A 3 303 55 HOH HOH . C 3 HOH A 4 304 49 HOH HOH . C 3 HOH A 5 305 40 HOH HOH . C 3 HOH A 6 306 73 HOH HOH . C 3 HOH A 7 307 15 HOH HOH . C 3 HOH A 8 308 31 HOH HOH . C 3 HOH A 9 309 61 HOH HOH . C 3 HOH A 10 310 30 HOH HOH . C 3 HOH A 11 311 36 HOH HOH . C 3 HOH A 12 312 29 HOH HOH . C 3 HOH A 13 313 35 HOH HOH . C 3 HOH A 14 314 63 HOH HOH . C 3 HOH A 15 315 28 HOH HOH . C 3 HOH A 16 316 70 HOH HOH . C 3 HOH A 17 317 23 HOH HOH . C 3 HOH A 18 318 6 HOH HOH . C 3 HOH A 19 319 77 HOH HOH . C 3 HOH A 20 320 72 HOH HOH . C 3 HOH A 21 321 17 HOH HOH . C 3 HOH A 22 322 43 HOH HOH . C 3 HOH A 23 323 13 HOH HOH . C 3 HOH A 24 324 8 HOH HOH . C 3 HOH A 25 325 44 HOH HOH . C 3 HOH A 26 326 21 HOH HOH . C 3 HOH A 27 327 59 HOH HOH . C 3 HOH A 28 328 57 HOH HOH . C 3 HOH A 29 329 76 HOH HOH . C 3 HOH A 30 330 62 HOH HOH . C 3 HOH A 31 331 16 HOH HOH . C 3 HOH A 32 332 78 HOH HOH . C 3 HOH A 33 333 39 HOH HOH . C 3 HOH A 34 334 46 HOH HOH . C 3 HOH A 35 335 45 HOH HOH . C 3 HOH A 36 336 4 HOH HOH . C 3 HOH A 37 337 60 HOH HOH . C 3 HOH A 38 338 74 HOH HOH . C 3 HOH A 39 339 14 HOH HOH . C 3 HOH A 40 340 27 HOH HOH . C 3 HOH A 41 341 12 HOH HOH . C 3 HOH A 42 342 22 HOH HOH . C 3 HOH A 43 343 7 HOH HOH . C 3 HOH A 44 344 65 HOH HOH . C 3 HOH A 45 345 34 HOH HOH . C 3 HOH A 46 346 3 HOH HOH . C 3 HOH A 47 347 33 HOH HOH . C 3 HOH A 48 348 81 HOH HOH . C 3 HOH A 49 349 26 HOH HOH . C 3 HOH A 50 350 51 HOH HOH . C 3 HOH A 51 351 48 HOH HOH . C 3 HOH A 52 352 69 HOH HOH . C 3 HOH A 53 353 47 HOH HOH . C 3 HOH A 54 354 42 HOH HOH . C 3 HOH A 55 355 53 HOH HOH . C 3 HOH A 56 356 71 HOH HOH . C 3 HOH A 57 357 18 HOH HOH . C 3 HOH A 58 358 58 HOH HOH . C 3 HOH A 59 359 66 HOH HOH . C 3 HOH A 60 360 24 HOH HOH . C 3 HOH A 61 361 9 HOH HOH . C 3 HOH A 62 362 5 HOH HOH . C 3 HOH A 63 363 75 HOH HOH . C 3 HOH A 64 364 52 HOH HOH . C 3 HOH A 65 365 38 HOH HOH . C 3 HOH A 66 366 1 HOH HOH . C 3 HOH A 67 367 25 HOH HOH . C 3 HOH A 68 368 50 HOH HOH . C 3 HOH A 69 369 32 HOH HOH . C 3 HOH A 70 370 56 HOH HOH . C 3 HOH A 71 371 64 HOH HOH . C 3 HOH A 72 372 41 HOH HOH . C 3 HOH A 73 373 10 HOH HOH . C 3 HOH A 74 374 19 HOH HOH . C 3 HOH A 75 375 80 HOH HOH . C 3 HOH A 76 376 20 HOH HOH . C 3 HOH A 77 377 11 HOH HOH . C 3 HOH A 78 378 2 HOH HOH . C 3 HOH A 79 379 37 HOH HOH . C 3 HOH A 80 380 68 HOH HOH . C 3 HOH A 81 381 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 5EC . . . B 2 7.768 7.404 -1.378 1 27.59 ? C2 5EC 201 A 1 HETATM 2 C C3 5EC . . . B 2 8.588 6.151 -1.622 1 33.17 ? C3 5EC 201 A 1 HETATM 3 C C4 5EC . . . B 2 9.834 5.991 -0.813 1 40.93 ? C4 5EC 201 A 1 HETATM 4 C C5 5EC . . . B 2 10.76 7.004 -0.839 1 46.86 ? C5 5EC 201 A 1 HETATM 5 C C6 5EC . . . B 2 11.944 6.834 -0.099 1 51.93 ? C6 5EC 201 A 1 HETATM 6 C C7 5EC . . . B 2 12.197 5.676 0.645 1 50.1 ? C7 5EC 201 A 1 HETATM 7 N N1 5EC . . . B 2 1.642 9.305 -3.261 1 18.11 ? N1 5EC 201 A 1 HETATM 8 C C8 5EC . . . B 2 11.269 4.641 0.643 1 47.57 ? C8 5EC 201 A 1 HETATM 9 C C20 5EC . . . B 2 5.107 7.69 1.365 1 27.29 ? C20 5EC 201 A 1 HETATM 10 C C22 5EC . . . B 2 5.145 8.757 2.483 1 30.51 ? C22 5EC 201 A 1 HETATM 11 C C23 5EC . . . B 2 5.769 8.178 3.733 1 32.3 ? C23 5EC 201 A 1 HETATM 12 C C24 5EC . . . B 2 5.845 10.083 2.187 1 29.67 ? C24 5EC 201 A 1 HETATM 13 C C 5EC . . . B 2 5.842 8.021 0.084 1 26.06 ? C 5EC 201 A 1 HETATM 14 O O 5EC . . . B 2 5.391 8.907 -0.646 1 22.64 ? O 5EC 201 A 1 HETATM 15 N N5 5EC . . . B 2 6.95 7.272 -0.169 1 25.42 ? N5 5EC 201 A 1 HETATM 16 C C9 5EC . . . B 2 10.086 4.808 -0.086 1 47.65 ? C9 5EC 201 A 1 HETATM 17 C C17 5EC . . . B 2 6.909 7.385 -2.637 1 25.04 ? C17 5EC 201 A 1 HETATM 18 O O4 5EC . . . B 2 6.233 6.389 -2.862 1 22.71 ? O4 5EC 201 A 1 HETATM 19 N N 5EC . . . B 2 6.87 8.43 -3.488 1 20.98 ? N 5EC 201 A 1 HETATM 20 C C10 5EC . . . B 2 6.049 8.345 -4.708 1 19.37 ? C10 5EC 201 A 1 HETATM 21 C C11 5EC . . . B 2 4.855 9.239 -4.744 1 17.94 ? C11 5EC 201 A 1 HETATM 22 C C12 5EC . . . B 2 3.883 8.977 -3.594 1 17.94 ? C12 5EC 201 A 1 HETATM 23 C C13 5EC . . . B 2 2.743 9.955 -3.641 1 19.49 ? C13 5EC 201 A 1 HETATM 24 O O1 5EC . . . B 2 2.899 11.188 -3.929 1 18.8 ? O1 5EC 201 A 1 HETATM 25 C C25 5EC . . . B 2 1.834 7.901 -2.952 1 18.44 ? C25 5EC 201 A 1 HETATM 26 C C26 5EC . . . B 2 3.221 7.599 -3.549 1 18.54 ? C26 5EC 201 A 1 HETATM 27 C C14 5EC . . . B 2 7.063 8.523 -5.842 1 20.5 ? C14 5EC 201 A 1 HETATM 28 C C15 5EC . . . B 2 7.783 7.23 -6.219 1 22.6 ? C15 5EC 201 A 1 HETATM 29 C C16 5EC . . . B 2 6.982 6.057 -6.689 1 26.26 ? C16 5EC 201 A 1 HETATM 30 O O3 5EC . . . B 2 6.033 6.129 -7.43 1 29.12 ? O3 5EC 201 A 1 HETATM 31 O O2 5EC . . . B 2 7.417 4.737 -6.271 1 33.52 ? O2 5EC 201 A 1 HETATM 32 C C18 5EC . . . B 2 6.598 3.96 -5.414 1 37.85 ? C18 5EC 201 A 1 HETATM 33 C C19 5EC . . . B 2 6.004 2.847 -6.229 1 38.08 ? C19 5EC 201 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 33 #