data_5DPT # _model_server_result.job_id rTTp9SlspwtKrXl1R2vmqQ _model_server_result.datetime_utc '2024-11-05 08:38:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dpt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 5DPT # _exptl.entry_id 5DPT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5DPT _cell.length_a 84.791 _cell.length_b 84.791 _cell.length_c 105.44 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DPT _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C 1 1 B,D 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 222 n n C1 H11 MPD sing 223 n n C1 H12 MPD sing 224 n n C1 H13 MPD sing 225 n n C2 O2 MPD sing 226 n n C2 CM MPD sing 227 n n C2 C3 MPD sing 228 n n O2 HO2 MPD sing 229 n n CM HM1 MPD sing 230 n n CM HM2 MPD sing 231 n n CM HM3 MPD sing 232 n n C3 C4 MPD sing 233 n n C3 H31 MPD sing 234 n n C3 H32 MPD sing 235 n n C4 O4 MPD sing 236 n n C4 C5 MPD sing 237 n n C4 H4 MPD sing 238 n n O4 HO4 MPD sing 239 n n C5 H51 MPD sing 240 n n C5 H52 MPD sing 241 n n C5 H53 MPD sing 242 n n # _atom_sites.entry_id 5DPT _atom_sites.fract_transf_matrix[1][1] 0.011794 _atom_sites.fract_transf_matrix[1][2] 0.006809 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013618 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009484 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MPD A 1 201 2 MPD MPD . D 2 MPD B 1 201 3 MPD MPD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . D 2 -47.908 15.997 -29.363 1 74.43 ? C1 MPD 201 B 1 HETATM 2 C C2 MPD . . . D 2 -46.907 15.046 -30.005 1 89.74 ? C2 MPD 201 B 1 HETATM 3 O O2 MPD . . . D 2 -47.563 14.321 -31.075 1 82.07 ? O2 MPD 201 B 1 HETATM 4 C CM MPD . . . D 2 -45.75 15.845 -30.592 1 106.97 ? CM MPD 201 B 1 HETATM 5 C C3 MPD . . . D 2 -46.401 14.042 -28.976 1 85.3 ? C3 MPD 201 B 1 HETATM 6 C C4 MPD . . . D 2 -47.381 12.886 -28.822 1 84.44 ? C4 MPD 201 B 1 HETATM 7 O O4 MPD . . . D 2 -46.855 11.736 -29.446 1 95.62 ? O4 MPD 201 B 1 HETATM 8 C C5 MPD . . . D 2 -47.649 12.589 -27.351 1 86.26 ? C5 MPD 201 B 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 8 #