data_5DPV # _model_server_result.job_id FyfkU3HdJme58WHlJgqoaw _model_server_result.datetime_utc '2024-10-10 13:30:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dpv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5DPV # _exptl.entry_id 5DPV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 346.151 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(3-bromophenyl)-8-fluoroquinoline-4-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5DPV _cell.length_a 83.76 _cell.length_b 83.76 _cell.length_c 166.471 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DPV _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H9 Br F N O2' _chem_comp.formula_weight 346.151 _chem_comp.id 5DN _chem_comp.mon_nstd_flag . _chem_comp.name '2-(3-bromophenyl)-8-fluoroquinoline-4-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O03 C02 5DN doub 1 n n C02 O01 5DN sing 2 n n C02 C04 5DN sing 3 n n C20 C19 5DN doub 4 n y C20 C21 5DN sing 5 n y C19 C18 5DN sing 6 n y C04 C21 5DN doub 7 n y C04 C05 5DN sing 8 n y C21 C15 5DN sing 9 n y C05 C06 5DN doub 10 n y C18 C16 5DN doub 11 n y C15 C16 5DN sing 12 n y C15 N14 5DN doub 13 n y C16 F17 5DN sing 14 n n C06 N14 5DN sing 15 n y C06 C07 5DN sing 16 n n C08 C07 5DN doub 17 n y C08 C09 5DN sing 18 n y C07 C13 5DN sing 19 n y C09 C10 5DN doub 20 n y C13 C11 5DN doub 21 n y C10 C11 5DN sing 22 n y C11 BR 5DN sing 23 n n O01 H1 5DN sing 24 n n C05 H2 5DN sing 25 n n C08 H3 5DN sing 26 n n C09 H4 5DN sing 27 n n C10 H5 5DN sing 28 n n C13 H6 5DN sing 29 n n C18 H7 5DN sing 30 n n C19 H8 5DN sing 31 n n C20 H9 5DN sing 32 n n # _atom_sites.entry_id 5DPV _atom_sites.fract_transf_matrix[1][1] 0.011939 _atom_sites.fract_transf_matrix[1][2] 0.006893 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013786 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006007 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5DN A 1 401 1 5DN 035 . C 3 SKE A 1 402 1 SKE JNJ . D 4 HOH A 1 501 24 HOH HOH . D 4 HOH A 2 502 4 HOH HOH . D 4 HOH A 3 503 8 HOH HOH . D 4 HOH A 4 504 14 HOH HOH . D 4 HOH A 5 505 11 HOH HOH . D 4 HOH A 6 506 7 HOH HOH . D 4 HOH A 7 507 3 HOH HOH . D 4 HOH A 8 508 5 HOH HOH . D 4 HOH A 9 509 33 HOH HOH . D 4 HOH A 10 510 25 HOH HOH . D 4 HOH A 11 511 1 HOH HOH . D 4 HOH A 12 512 6 HOH HOH . D 4 HOH A 13 513 39 HOH HOH . D 4 HOH A 14 514 26 HOH HOH . D 4 HOH A 15 515 9 HOH HOH . D 4 HOH A 16 516 22 HOH HOH . D 4 HOH A 17 517 10 HOH HOH . D 4 HOH A 18 518 41 HOH HOH . D 4 HOH A 19 519 18 HOH HOH . D 4 HOH A 20 520 27 HOH HOH . D 4 HOH A 21 521 17 HOH HOH . D 4 HOH A 22 522 13 HOH HOH . D 4 HOH A 23 523 28 HOH HOH . D 4 HOH A 24 524 20 HOH HOH . D 4 HOH A 25 525 19 HOH HOH . D 4 HOH A 26 526 21 HOH HOH . D 4 HOH A 27 527 23 HOH HOH . D 4 HOH A 28 528 40 HOH HOH . D 4 HOH A 29 529 15 HOH HOH . D 4 HOH A 30 530 38 HOH HOH . D 4 HOH A 31 531 34 HOH HOH . D 4 HOH A 32 532 31 HOH HOH . D 4 HOH A 33 533 12 HOH HOH . D 4 HOH A 34 534 36 HOH HOH . D 4 HOH A 35 535 37 HOH HOH . D 4 HOH A 36 536 35 HOH HOH . D 4 HOH A 37 537 30 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O01 5DN . . . B 2 -5.618 -6.721 13.672 1 105.54 ? O01 5DN 401 A 1 HETATM 2 C C02 5DN . . . B 2 -4.901 -7.8 13.278 1 106.23 ? C02 5DN 401 A 1 HETATM 3 O O03 5DN . . . B 2 -3.695 -7.661 13.265 1 109.47 ? O03 5DN 401 A 1 HETATM 4 C C04 5DN . . . B 2 -5.637 -9.029 12.907 1 103.68 ? C04 5DN 401 A 1 HETATM 5 C C05 5DN . . . B 2 -5.642 -10.09 13.765 1 101.7 ? C05 5DN 401 A 1 HETATM 6 C C06 5DN . . . B 2 -6.359 -11.273 13.393 1 99.03 ? C06 5DN 401 A 1 HETATM 7 C C07 5DN . . . B 2 -6.385 -12.435 14.295 1 99.49 ? C07 5DN 401 A 1 HETATM 8 C C08 5DN . . . B 2 -5.711 -12.385 15.517 1 98.42 ? C08 5DN 401 A 1 HETATM 9 C C09 5DN . . . B 2 -5.726 -13.474 16.38 1 100.27 ? C09 5DN 401 A 1 HETATM 10 C C10 5DN . . . B 2 -6.416 -14.632 16.036 1 103.51 ? C10 5DN 401 A 1 HETATM 11 C C11 5DN . . . B 2 -7.075 -14.654 14.823 1 104.82 ? C11 5DN 401 A 1 HETATM 12 BR BR 5DN . . . B 2 -8.04 -16.262 14.333 1 109.41 ? BR 5DN 401 A 1 HETATM 13 C C13 5DN . . . B 2 -7.083 -13.592 13.938 1 102.61 ? C13 5DN 401 A 1 HETATM 14 N N14 5DN . . . B 2 -7.021 -11.378 12.242 1 98.35 ? N14 5DN 401 A 1 HETATM 15 C C15 5DN . . . B 2 -7.003 -10.295 11.388 1 98.9 ? C15 5DN 401 A 1 HETATM 16 C C16 5DN . . . B 2 -7.713 -10.397 10.144 1 97.24 ? C16 5DN 401 A 1 HETATM 17 F F17 5DN . . . B 2 -8.356 -11.516 9.857 1 94.36 ? F17 5DN 401 A 1 HETATM 18 C C18 5DN . . . B 2 -7.731 -9.349 9.252 1 98.31 ? C18 5DN 401 A 1 HETATM 19 C C19 5DN . . . B 2 -7.041 -8.158 9.566 1 98.7 ? C19 5DN 401 A 1 HETATM 20 C C20 5DN . . . B 2 -6.355 -8.024 10.742 1 99.93 ? C20 5DN 401 A 1 HETATM 21 C C21 5DN . . . B 2 -6.326 -9.092 11.669 1 101.18 ? C21 5DN 401 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 21 #