data_5DQN # _model_server_result.job_id 1oqNWLI4w5WCH3_oCdkNDg _model_server_result.datetime_utc '2024-11-15 18:35:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dqn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 5DQN # _exptl.entry_id 5DQN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5DQN _cell.length_a 108.821 _cell.length_b 108.821 _cell.length_c 118.809 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DQN _symmetry.cell_setting ? _symmetry.Int_Tables_number 80 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 360 A CYS 360 1_555 B FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc2 B FE HEM . A HEM 501 1_555 F OH2 1PE . A 1PE 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 399 n n P O2 PO4 sing 400 n n P O3 PO4 sing 401 n n P O4 PO4 sing 402 n n # _atom_sites.entry_id 5DQN _atom_sites.fract_transf_matrix[1][1] 0.009189 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009189 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008417 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 501 1418 HEM HEM . C 3 PO4 A 1 502 601 PO4 PO4 . D 3 PO4 A 1 503 602 PO4 PO4 . E 4 CIT A 1 504 701 CIT CIT . F 5 1PE A 1 505 502 1PE P6E . G 6 HOH A 1 601 42 HOH HOH . G 6 HOH A 2 602 48 HOH HOH . G 6 HOH A 3 603 18 HOH HOH . G 6 HOH A 4 604 39 HOH HOH . G 6 HOH A 5 605 36 HOH HOH . G 6 HOH A 6 606 19 HOH HOH . G 6 HOH A 7 607 1 HOH HOH . G 6 HOH A 8 608 76 HOH HOH . G 6 HOH A 9 609 23 HOH HOH . G 6 HOH A 10 610 5 HOH HOH . G 6 HOH A 11 611 75 HOH HOH . G 6 HOH A 12 612 30 HOH HOH . G 6 HOH A 13 613 29 HOH HOH . G 6 HOH A 14 614 46 HOH HOH . G 6 HOH A 15 615 63 HOH HOH . G 6 HOH A 16 616 49 HOH HOH . G 6 HOH A 17 617 2 HOH HOH . G 6 HOH A 18 618 66 HOH HOH . G 6 HOH A 19 619 86 HOH HOH . G 6 HOH A 20 620 34 HOH HOH . G 6 HOH A 21 621 47 HOH HOH . G 6 HOH A 22 622 7 HOH HOH . G 6 HOH A 23 623 52 HOH HOH . G 6 HOH A 24 624 8 HOH HOH . G 6 HOH A 25 625 57 HOH HOH . G 6 HOH A 26 626 83 HOH HOH . G 6 HOH A 27 627 10 HOH HOH . G 6 HOH A 28 628 13 HOH HOH . G 6 HOH A 29 629 16 HOH HOH . G 6 HOH A 30 630 41 HOH HOH . G 6 HOH A 31 631 22 HOH HOH . G 6 HOH A 32 632 69 HOH HOH . G 6 HOH A 33 633 77 HOH HOH . G 6 HOH A 34 634 6 HOH HOH . G 6 HOH A 35 635 44 HOH HOH . G 6 HOH A 36 636 28 HOH HOH . G 6 HOH A 37 637 87 HOH HOH . G 6 HOH A 38 638 24 HOH HOH . G 6 HOH A 39 639 14 HOH HOH . G 6 HOH A 40 640 59 HOH HOH . G 6 HOH A 41 641 65 HOH HOH . G 6 HOH A 42 642 43 HOH HOH . G 6 HOH A 43 643 21 HOH HOH . G 6 HOH A 44 644 4 HOH HOH . G 6 HOH A 45 645 71 HOH HOH . G 6 HOH A 46 646 68 HOH HOH . G 6 HOH A 47 647 9 HOH HOH . G 6 HOH A 48 648 70 HOH HOH . G 6 HOH A 49 649 64 HOH HOH . G 6 HOH A 50 650 58 HOH HOH . G 6 HOH A 51 651 11 HOH HOH . G 6 HOH A 52 652 60 HOH HOH . G 6 HOH A 53 653 40 HOH HOH . G 6 HOH A 54 654 3 HOH HOH . G 6 HOH A 55 655 37 HOH HOH . G 6 HOH A 56 656 50 HOH HOH . G 6 HOH A 57 657 56 HOH HOH . G 6 HOH A 58 658 12 HOH HOH . G 6 HOH A 59 659 61 HOH HOH . G 6 HOH A 60 660 17 HOH HOH . G 6 HOH A 61 661 54 HOH HOH . G 6 HOH A 62 662 74 HOH HOH . G 6 HOH A 63 663 20 HOH HOH . G 6 HOH A 64 664 62 HOH HOH . G 6 HOH A 65 665 79 HOH HOH . G 6 HOH A 66 666 51 HOH HOH . G 6 HOH A 67 667 15 HOH HOH . G 6 HOH A 68 668 35 HOH HOH . G 6 HOH A 69 669 38 HOH HOH . G 6 HOH A 70 670 32 HOH HOH . G 6 HOH A 71 671 31 HOH HOH . G 6 HOH A 72 672 27 HOH HOH . G 6 HOH A 73 673 45 HOH HOH . G 6 HOH A 74 674 84 HOH HOH . G 6 HOH A 75 675 53 HOH HOH . G 6 HOH A 76 676 25 HOH HOH . G 6 HOH A 77 677 26 HOH HOH . G 6 HOH A 78 678 55 HOH HOH . G 6 HOH A 79 679 85 HOH HOH . G 6 HOH A 80 680 72 HOH HOH . G 6 HOH A 81 681 73 HOH HOH . G 6 HOH A 82 682 89 HOH HOH . G 6 HOH A 83 683 88 HOH HOH . G 6 HOH A 84 684 67 HOH HOH . G 6 HOH A 85 685 81 HOH HOH . G 6 HOH A 86 686 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . C 3 10.035 -13.097 7.085 0.77 75.71 ? P PO4 502 A 1 HETATM 2 O O1 PO4 . . . C 3 9.502 -13.14 5.665 0.77 64.67 ? O1 PO4 502 A 1 HETATM 3 O O2 PO4 . . . C 3 11.26 -12.21 7.151 0.77 63.31 ? O2 PO4 502 A 1 HETATM 4 O O3 PO4 . . . C 3 10.399 -14.485 7.559 0.77 47.38 ? O3 PO4 502 A 1 HETATM 5 O O4 PO4 . . . C 3 8.956 -12.533 7.976 0.77 78.27 ? O4 PO4 502 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 5 #