data_5DQN # _model_server_result.job_id tkGjU6x79QMSZ2UDh9yH1w _model_server_result.datetime_utc '2024-11-15 18:53:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dqn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":504}' # _entry.id 5DQN # _exptl.entry_id 5DQN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5DQN _cell.length_a 108.821 _cell.length_b 108.821 _cell.length_c 118.809 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DQN _symmetry.cell_setting ? _symmetry.Int_Tables_number 80 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 360 A CYS 360 1_555 B FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc2 B FE HEM . A HEM 501 1_555 F OH2 1PE . A 1PE 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 107 n n C1 O2 CIT sing 108 n n C1 C2 CIT sing 109 n n O2 HO2 CIT sing 110 n n C2 C3 CIT sing 111 n n C2 H21 CIT sing 112 n n C2 H22 CIT sing 113 n n C3 O7 CIT sing 114 n n C3 C4 CIT sing 115 n n C3 C6 CIT sing 116 n n O7 HO7 CIT sing 117 n n C4 C5 CIT sing 118 n n C4 H41 CIT sing 119 n n C4 H42 CIT sing 120 n n C5 O3 CIT doub 121 n n C5 O4 CIT sing 122 n n O4 HO4 CIT sing 123 n n C6 O5 CIT doub 124 n n C6 O6 CIT sing 125 n n O6 HO6 CIT sing 126 n n # _atom_sites.entry_id 5DQN _atom_sites.fract_transf_matrix[1][1] 0.009189 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009189 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008417 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 501 1418 HEM HEM . C 3 PO4 A 1 502 601 PO4 PO4 . D 3 PO4 A 1 503 602 PO4 PO4 . E 4 CIT A 1 504 701 CIT CIT . F 5 1PE A 1 505 502 1PE P6E . G 6 HOH A 1 601 42 HOH HOH . G 6 HOH A 2 602 48 HOH HOH . G 6 HOH A 3 603 18 HOH HOH . G 6 HOH A 4 604 39 HOH HOH . G 6 HOH A 5 605 36 HOH HOH . G 6 HOH A 6 606 19 HOH HOH . G 6 HOH A 7 607 1 HOH HOH . G 6 HOH A 8 608 76 HOH HOH . G 6 HOH A 9 609 23 HOH HOH . G 6 HOH A 10 610 5 HOH HOH . G 6 HOH A 11 611 75 HOH HOH . G 6 HOH A 12 612 30 HOH HOH . G 6 HOH A 13 613 29 HOH HOH . G 6 HOH A 14 614 46 HOH HOH . G 6 HOH A 15 615 63 HOH HOH . G 6 HOH A 16 616 49 HOH HOH . G 6 HOH A 17 617 2 HOH HOH . G 6 HOH A 18 618 66 HOH HOH . G 6 HOH A 19 619 86 HOH HOH . G 6 HOH A 20 620 34 HOH HOH . G 6 HOH A 21 621 47 HOH HOH . G 6 HOH A 22 622 7 HOH HOH . G 6 HOH A 23 623 52 HOH HOH . G 6 HOH A 24 624 8 HOH HOH . G 6 HOH A 25 625 57 HOH HOH . G 6 HOH A 26 626 83 HOH HOH . G 6 HOH A 27 627 10 HOH HOH . G 6 HOH A 28 628 13 HOH HOH . G 6 HOH A 29 629 16 HOH HOH . G 6 HOH A 30 630 41 HOH HOH . G 6 HOH A 31 631 22 HOH HOH . G 6 HOH A 32 632 69 HOH HOH . G 6 HOH A 33 633 77 HOH HOH . G 6 HOH A 34 634 6 HOH HOH . G 6 HOH A 35 635 44 HOH HOH . G 6 HOH A 36 636 28 HOH HOH . G 6 HOH A 37 637 87 HOH HOH . G 6 HOH A 38 638 24 HOH HOH . G 6 HOH A 39 639 14 HOH HOH . G 6 HOH A 40 640 59 HOH HOH . G 6 HOH A 41 641 65 HOH HOH . G 6 HOH A 42 642 43 HOH HOH . G 6 HOH A 43 643 21 HOH HOH . G 6 HOH A 44 644 4 HOH HOH . G 6 HOH A 45 645 71 HOH HOH . G 6 HOH A 46 646 68 HOH HOH . G 6 HOH A 47 647 9 HOH HOH . G 6 HOH A 48 648 70 HOH HOH . G 6 HOH A 49 649 64 HOH HOH . G 6 HOH A 50 650 58 HOH HOH . G 6 HOH A 51 651 11 HOH HOH . G 6 HOH A 52 652 60 HOH HOH . G 6 HOH A 53 653 40 HOH HOH . G 6 HOH A 54 654 3 HOH HOH . G 6 HOH A 55 655 37 HOH HOH . G 6 HOH A 56 656 50 HOH HOH . G 6 HOH A 57 657 56 HOH HOH . G 6 HOH A 58 658 12 HOH HOH . G 6 HOH A 59 659 61 HOH HOH . G 6 HOH A 60 660 17 HOH HOH . G 6 HOH A 61 661 54 HOH HOH . G 6 HOH A 62 662 74 HOH HOH . G 6 HOH A 63 663 20 HOH HOH . G 6 HOH A 64 664 62 HOH HOH . G 6 HOH A 65 665 79 HOH HOH . G 6 HOH A 66 666 51 HOH HOH . G 6 HOH A 67 667 15 HOH HOH . G 6 HOH A 68 668 35 HOH HOH . G 6 HOH A 69 669 38 HOH HOH . G 6 HOH A 70 670 32 HOH HOH . G 6 HOH A 71 671 31 HOH HOH . G 6 HOH A 72 672 27 HOH HOH . G 6 HOH A 73 673 45 HOH HOH . G 6 HOH A 74 674 84 HOH HOH . G 6 HOH A 75 675 53 HOH HOH . G 6 HOH A 76 676 25 HOH HOH . G 6 HOH A 77 677 26 HOH HOH . G 6 HOH A 78 678 55 HOH HOH . G 6 HOH A 79 679 85 HOH HOH . G 6 HOH A 80 680 72 HOH HOH . G 6 HOH A 81 681 73 HOH HOH . G 6 HOH A 82 682 89 HOH HOH . G 6 HOH A 83 683 88 HOH HOH . G 6 HOH A 84 684 67 HOH HOH . G 6 HOH A 85 685 81 HOH HOH . G 6 HOH A 86 686 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . B . E 4 1.03 -7.062 -11.718 0.77 114.34 ? C1 CIT 504 A 1 HETATM 2 O O1 CIT . B . E 4 1.937 -7.342 -12.53 0.77 113.03 ? O1 CIT 504 A 1 HETATM 3 O O2 CIT . B . E 4 1.167 -6.052 -10.994 0.77 107.98 ? O2 CIT 504 A 1 HETATM 4 C C2 CIT . B . E 4 -0.22 -7.907 -11.605 0.77 122.35 ? C2 CIT 504 A 1 HETATM 5 C C3 CIT . B . E 4 -0.177 -9.17 -12.466 0.77 124.48 ? C3 CIT 504 A 1 HETATM 6 O O7 CIT . B . E 4 1.103 -9.28 -13.136 0.77 125.56 ? O7 CIT 504 A 1 HETATM 7 C C4 CIT . B . E 4 -1.273 -9.166 -13.528 0.77 127.24 ? C4 CIT 504 A 1 HETATM 8 C C5 CIT . B . E 4 -1.095 -8.017 -14.498 0.77 123.67 ? C5 CIT 504 A 1 HETATM 9 O O3 CIT . B . E 4 -2.089 -7.532 -15.082 0.77 124.13 ? O3 CIT 504 A 1 HETATM 10 O O4 CIT . B . E 4 0.036 -7.534 -14.733 0.77 118.11 ? O4 CIT 504 A 1 HETATM 11 C C6 CIT . B . E 4 -0.375 -10.376 -11.556 0.77 115.89 ? C6 CIT 504 A 1 HETATM 12 O O5 CIT . B . E 4 0.232 -11.444 -11.785 0.77 119.1 ? O5 CIT 504 A 1 HETATM 13 O O6 CIT . B . E 4 -1.145 -10.318 -10.57 0.77 103.99 ? O6 CIT 504 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 13 #