data_5DQQ # _model_server_result.job_id BRr0jU3SefziGYO2A61FXA _model_server_result.datetime_utc '2024-11-04 22:56:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dqq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":808}' # _entry.id 5DQQ # _exptl.entry_id 5DQQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 256.424 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PALMITIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5DQQ _cell.length_a 88.18 _cell.length_b 154.81 _cell.length_c 219.77 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DQQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 114 A GLU 124 1_555 H CA CA . A CA 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc2 A OE1 GLU 229 A GLU 239 1_555 E CA CA . A CA 804 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.901 ? metalc ? metalc3 A OE2 GLU 229 A GLU 239 1_555 E CA CA . A CA 804 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.53 ? metalc ? metalc4 A OD2 ASP 230 A ASP 240 1_555 F CA CA . A CA 805 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc5 A OD1 ASP 325 A ASP 335 1_555 G CA CA . A CA 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? metalc ? metalc6 A OD1 ASP 327 A ASP 337 1_555 G CA CA . A CA 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc7 A OD2 ASP 327 A ASP 337 1_555 G CA CA . A CA 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? metalc ? metalc8 A OD1 ASN 329 A ASN 339 1_555 G CA CA . A CA 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.176 ? metalc ? metalc9 A O GLU 331 A GLU 341 1_555 G CA CA . A CA 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc10 A OE1 GLN 336 A GLN 346 1_555 G CA CA . A CA 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.06 ? metalc ? metalc11 A OE2 GLU 364 A GLU 374 1_555 C CA CA . A CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.858 ? metalc ? metalc12 A OD2 ASP 444 A ASP 454 1_555 F CA CA . A CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? metalc ? metalc13 A OE1 GLU 518 A GLU 528 1_555 F CA CA . A CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.973 ? metalc ? metalc14 E CA CA . A CA 804 1_555 K O HOH . A HOH 943 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? metalc ? metalc15 F CA CA . A CA 805 1_555 K O HOH . A HOH 932 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.014 ? metalc ? metalc16 H CA CA . A CA 807 1_555 K O HOH . A HOH 918 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.949 ? # _chem_comp.formula 'C16 H32 O2' _chem_comp.formula_weight 256.424 _chem_comp.id PLM _chem_comp.mon_nstd_flag . _chem_comp.name 'PALMITIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PLM sing 334 n n C1 O2 PLM doub 335 n n C1 C2 PLM sing 336 n n O1 H PLM sing 337 n n C2 C3 PLM sing 338 n n C2 H21 PLM sing 339 n n C2 H22 PLM sing 340 n n C3 C4 PLM sing 341 n n C3 H31 PLM sing 342 n n C3 H32 PLM sing 343 n n C4 C5 PLM sing 344 n n C4 H41 PLM sing 345 n n C4 H42 PLM sing 346 n n C5 C6 PLM sing 347 n n C5 H51 PLM sing 348 n n C5 H52 PLM sing 349 n n C6 C7 PLM sing 350 n n C6 H61 PLM sing 351 n n C6 H62 PLM sing 352 n n C7 C8 PLM sing 353 n n C7 H71 PLM sing 354 n n C7 H72 PLM sing 355 n n C8 C9 PLM sing 356 n n C8 H81 PLM sing 357 n n C8 H82 PLM sing 358 n n C9 CA PLM sing 359 n n C9 H91 PLM sing 360 n n C9 H92 PLM sing 361 n n CA CB PLM sing 362 n n CA HA1 PLM sing 363 n n CA HA2 PLM sing 364 n n CB CC PLM sing 365 n n CB HB1 PLM sing 366 n n CB HB2 PLM sing 367 n n CC CD PLM sing 368 n n CC HC1 PLM sing 369 n n CC HC2 PLM sing 370 n n CD CE PLM sing 371 n n CD HD1 PLM sing 372 n n CD HD2 PLM sing 373 n n CE CF PLM sing 374 n n CE HE1 PLM sing 375 n n CE HE2 PLM sing 376 n n CF CG PLM sing 377 n n CF HF1 PLM sing 378 n n CF HF2 PLM sing 379 n n CG HG1 PLM sing 380 n n CG HG2 PLM sing 381 n n CG HG3 PLM sing 382 n n # _atom_sites.entry_id 5DQQ _atom_sites.fract_transf_matrix[1][1] 0.01134 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00646 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00455 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 801 801 CA CA . C 2 CA A 1 802 802 CA CA . D 2 CA A 1 803 803 CA CA . E 2 CA A 1 804 804 CA CA . F 2 CA A 1 805 805 CA CA . G 2 CA A 1 806 809 CA CA . H 2 CA A 1 807 810 CA CA . I 3 PLM A 1 808 1 PLM PMA . J 4 66R A 1 809 1 66R NED . K 5 HOH A 1 901 79 HOH HOH . K 5 HOH A 2 902 36 HOH HOH . K 5 HOH A 3 903 8 HOH HOH . K 5 HOH A 4 904 34 HOH HOH . K 5 HOH A 5 905 67 HOH HOH . K 5 HOH A 6 906 57 HOH HOH . K 5 HOH A 7 907 80 HOH HOH . K 5 HOH A 8 908 64 HOH HOH . K 5 HOH A 9 909 51 HOH HOH . K 5 HOH A 10 910 29 HOH HOH . K 5 HOH A 11 911 75 HOH HOH . K 5 HOH A 12 912 62 HOH HOH . K 5 HOH A 13 913 63 HOH HOH . K 5 HOH A 14 914 52 HOH HOH . K 5 HOH A 15 915 72 HOH HOH . K 5 HOH A 16 916 31 HOH HOH . K 5 HOH A 17 917 23 HOH HOH . K 5 HOH A 18 918 58 HOH HOH . K 5 HOH A 19 919 56 HOH HOH . K 5 HOH A 20 920 17 HOH HOH . K 5 HOH A 21 921 9 HOH HOH . K 5 HOH A 22 922 26 HOH HOH . K 5 HOH A 23 923 53 HOH HOH . K 5 HOH A 24 924 70 HOH HOH . K 5 HOH A 25 925 25 HOH HOH . K 5 HOH A 26 926 40 HOH HOH . K 5 HOH A 27 927 19 HOH HOH . K 5 HOH A 28 928 12 HOH HOH . K 5 HOH A 29 929 38 HOH HOH . K 5 HOH A 30 930 41 HOH HOH . K 5 HOH A 31 931 55 HOH HOH . K 5 HOH A 32 932 61 HOH HOH . K 5 HOH A 33 933 76 HOH HOH . K 5 HOH A 34 934 43 HOH HOH . K 5 HOH A 35 935 28 HOH HOH . K 5 HOH A 36 936 16 HOH HOH . K 5 HOH A 37 937 73 HOH HOH . K 5 HOH A 38 938 3 HOH HOH . K 5 HOH A 39 939 74 HOH HOH . K 5 HOH A 40 940 48 HOH HOH . K 5 HOH A 41 941 68 HOH HOH . K 5 HOH A 42 942 42 HOH HOH . K 5 HOH A 43 943 60 HOH HOH . K 5 HOH A 44 944 50 HOH HOH . K 5 HOH A 45 945 49 HOH HOH . K 5 HOH A 46 946 78 HOH HOH . K 5 HOH A 47 947 45 HOH HOH . K 5 HOH A 48 948 59 HOH HOH . K 5 HOH A 49 949 30 HOH HOH . K 5 HOH A 50 950 4 HOH HOH . K 5 HOH A 51 951 54 HOH HOH . K 5 HOH A 52 952 66 HOH HOH . K 5 HOH A 53 953 39 HOH HOH . K 5 HOH A 54 954 44 HOH HOH . K 5 HOH A 55 955 77 HOH HOH . K 5 HOH A 56 956 46 HOH HOH . K 5 HOH A 57 957 71 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PLM . . . I 3 1.885 5.328 -26.431 1 138.26 ? C1 PLM 808 A 1 HETATM 2 O O1 PLM . . . I 3 3.001 4.751 -26.324 1 110.18 ? O1 PLM 808 A 1 HETATM 3 O O2 PLM . . . I 3 1.812 6.462 -26.979 1 183.91 ? O2 PLM 808 A 1 HETATM 4 C C2 PLM . . . I 3 0.627 4.65 -25.886 1 114.09 ? C2 PLM 808 A 1 HETATM 5 C C3 PLM . . . I 3 -0.648 5.111 -26.586 1 107.42 ? C3 PLM 808 A 1 HETATM 6 C C4 PLM . . . I 3 -1.918 4.609 -25.903 1 94.68 ? C4 PLM 808 A 1 HETATM 7 C C5 PLM . . . I 3 -3.085 5.578 -26.065 1 91.58 ? C5 PLM 808 A 1 HETATM 8 C C6 PLM . . . I 3 -4.252 5.241 -25.141 1 92.9 ? C6 PLM 808 A 1 HETATM 9 C C7 PLM . . . I 3 -5.529 6.014 -25.469 1 82.03 ? C7 PLM 808 A 1 HETATM 10 C C8 PLM . . . I 3 -6.795 5.198 -25.215 1 87.42 ? C8 PLM 808 A 1 HETATM 11 C C9 PLM . . . I 3 -7.997 6.04 -24.79 1 72.2 ? C9 PLM 808 A 1 HETATM 12 C CA PLM . . . I 3 -9.005 5.272 -23.932 1 72.82 ? CA PLM 808 A 1 HETATM 13 C CB PLM . . . I 3 -10.347 5.057 -24.63 1 86.13 ? CB PLM 808 A 1 HETATM 14 C CC PLM . . . I 3 -11.19 3.951 -23.997 1 76.1 ? CC PLM 808 A 1 HETATM 15 C CD PLM . . . I 3 -11.239 2.683 -24.847 1 54.85 ? CD PLM 808 A 1 HETATM 16 C CE PLM . . . I 3 -12.481 1.837 -24.576 1 56.76 ? CE PLM 808 A 1 HETATM 17 C CF PLM . . . I 3 -13.527 1.947 -25.682 1 69.34 ? CF PLM 808 A 1 HETATM 18 C CG PLM . . . I 3 -14.492 0.764 -25.696 1 75.2 ? CG PLM 808 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 18 #