data_5DQQ
#
_model_server_result.job_id            J5bIh_IcIqOgytp66icX-Q 
_model_server_result.datetime_utc      '2024-11-21 14:35:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5dqq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":809}' 
#
_entry.id    5DQQ 
#
_exptl.entry_id    5DQQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              514.591 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'trans-Ned 19' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5DQQ 
_cell.length_a            88.18 
_cell.length_b            154.81 
_cell.length_c            219.77 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5DQQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             J 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE2 GLU 114 A GLU 124 1_555 H CA CA . A CA 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? 
metalc ? metalc2 A OE1 GLU 229 A GLU 239 1_555 E CA CA . A CA 804 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.901 ? 
metalc ? metalc3 A OE2 GLU 229 A GLU 239 1_555 E CA CA . A CA 804 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.53 ? 
metalc ? metalc4 A OD2 ASP 230 A ASP 240 1_555 F CA CA . A CA 805 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? 
metalc ? metalc5 A OD1 ASP 325 A ASP 335 1_555 G CA CA . A CA 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? 
metalc ? metalc6 A OD1 ASP 327 A ASP 337 1_555 G CA CA . A CA 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? 
metalc ? metalc7 A OD2 ASP 327 A ASP 337 1_555 G CA CA . A CA 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? 
metalc ? metalc8 A OD1 ASN 329 A ASN 339 1_555 G CA CA . A CA 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.176 ? 
metalc ? metalc9 A O GLU 331 A GLU 341 1_555 G CA CA . A CA 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc10 A OE1 GLN 336 A GLN 346 1_555 G CA CA . A CA 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.06 ? 
metalc ? metalc11 A OE2 GLU 364 A GLU 374 1_555 C CA CA . A CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.858 ? 
metalc ? metalc12 A OD2 ASP 444 A ASP 454 1_555 F CA CA . A CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? 
metalc ? metalc13 A OE1 GLU 518 A GLU 528 1_555 F CA CA . A CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.973 ? 
metalc ? metalc14 E CA CA . A CA 804 1_555 K O HOH . A HOH 943 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? 
metalc ? metalc15 F CA CA . A CA 805 1_555 K O HOH . A HOH 932 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.014 ? 
metalc ? metalc16 H CA CA . A CA 807 1_555 K O HOH . A HOH 918 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.949 ? 
#
_chem_comp.formula           'C30 H31 F N4 O3' 
_chem_comp.formula_weight    514.591 
_chem_comp.id                66R 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'trans-Ned 19' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '(1R,3S)-1-(3-{[4-(2-fluorophenyl)piperazin-1-yl]methyl}-4-methoxyphenyl)-2,3,4,9-tetrahydro-1H-beta-carboline-3-carboxy lic acid' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O28 C27 66R doub 1 n n 
C36 C35 66R doub 2 n y 
C36 C30 66R sing 3 n y 
C27 O29 66R sing 4 n n 
C27 C25 66R sing 5 n n 
C35 C34 66R sing 6 n y 
C24 C25 66R sing 7 n n 
C24 C23 66R sing 8 n n 
C25 N26 66R sing 9 n n 
C30 C23 66R sing 10 n y 
C30 C31 66R doub 11 n y 
C23 C22 66R doub 12 n y 
C34 C33 66R doub 13 n y 
N26 C21 66R sing 14 n n 
C31 C33 66R sing 15 n y 
C31 N32 66R sing 16 n y 
C22 N32 66R sing 17 n y 
C22 C21 66R sing 18 n n 
C21 C19 66R sing 19 n n 
C18 C19 66R doub 20 n y 
C18 C17 66R sing 21 n y 
C19 C20 66R sing 22 n y 
C17 C16 66R doub 23 n y 
C20 C15 66R doub 24 n y 
C16 C15 66R sing 25 n y 
C16 O37 66R sing 26 n n 
C15 C14 66R sing 27 n n 
O37 C38 66R sing 28 n n 
C14 N11 66R sing 29 n n 
N11 C10 66R sing 30 n n 
N11 C12 66R sing 31 n n 
C10 C09 66R sing 32 n n 
C12 C13 66R sing 33 n n 
C09 N08 66R sing 34 n n 
C13 N08 66R sing 35 n n 
N08 C02 66R sing 36 n n 
C02 C01 66R doub 37 n y 
C02 C03 66R sing 38 n y 
C01 C06 66R sing 39 n y 
F07 C03 66R sing 40 n n 
C03 C04 66R doub 41 n y 
C06 C05 66R doub 42 n y 
C04 C05 66R sing 43 n y 
C01 H1 66R sing 44 n n 
C04 H2 66R sing 45 n n 
C05 H3 66R sing 46 n n 
C06 H4 66R sing 47 n n 
C09 H5 66R sing 48 n n 
C09 H6 66R sing 49 n n 
C10 H7 66R sing 50 n n 
C10 H8 66R sing 51 n n 
C12 H10 66R sing 52 n n 
C12 H11 66R sing 53 n n 
C13 H12 66R sing 54 n n 
C13 H13 66R sing 55 n n 
C14 H14 66R sing 56 n n 
C14 H15 66R sing 57 n n 
C17 H16 66R sing 58 n n 
C18 H17 66R sing 59 n n 
C20 H18 66R sing 60 n n 
C21 H19 66R sing 61 n n 
C24 H20 66R sing 62 n n 
C24 H21 66R sing 63 n n 
C25 H22 66R sing 64 n n 
N26 H23 66R sing 65 n n 
O29 H25 66R sing 66 n n 
N32 H26 66R sing 67 n n 
C33 H27 66R sing 68 n n 
C34 H28 66R sing 69 n n 
C35 H29 66R sing 70 n n 
C36 H30 66R sing 71 n n 
C38 H31 66R sing 72 n n 
C38 H32 66R sing 73 n n 
C38 H33 66R sing 74 n n 
#
_atom_sites.entry_id                     5DQQ 
_atom_sites.fract_transf_matrix[1][1]    0.01134 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00646 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00455 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 801 801 CA CA . 
C 2 CA A 1 802 802 CA CA . 
D 2 CA A 1 803 803 CA CA . 
E 2 CA A 1 804 804 CA CA . 
F 2 CA A 1 805 805 CA CA . 
G 2 CA A 1 806 809 CA CA . 
H 2 CA A 1 807 810 CA CA . 
I 3 PLM A 1 808 1 PLM PMA . 
J 4 66R A 1 809 1 66R NED . 
K 5 HOH A 1 901 79 HOH HOH . 
K 5 HOH A 2 902 36 HOH HOH . 
K 5 HOH A 3 903 8 HOH HOH . 
K 5 HOH A 4 904 34 HOH HOH . 
K 5 HOH A 5 905 67 HOH HOH . 
K 5 HOH A 6 906 57 HOH HOH . 
K 5 HOH A 7 907 80 HOH HOH . 
K 5 HOH A 8 908 64 HOH HOH . 
K 5 HOH A 9 909 51 HOH HOH . 
K 5 HOH A 10 910 29 HOH HOH . 
K 5 HOH A 11 911 75 HOH HOH . 
K 5 HOH A 12 912 62 HOH HOH . 
K 5 HOH A 13 913 63 HOH HOH . 
K 5 HOH A 14 914 52 HOH HOH . 
K 5 HOH A 15 915 72 HOH HOH . 
K 5 HOH A 16 916 31 HOH HOH . 
K 5 HOH A 17 917 23 HOH HOH . 
K 5 HOH A 18 918 58 HOH HOH . 
K 5 HOH A 19 919 56 HOH HOH . 
K 5 HOH A 20 920 17 HOH HOH . 
K 5 HOH A 21 921 9 HOH HOH . 
K 5 HOH A 22 922 26 HOH HOH . 
K 5 HOH A 23 923 53 HOH HOH . 
K 5 HOH A 24 924 70 HOH HOH . 
K 5 HOH A 25 925 25 HOH HOH . 
K 5 HOH A 26 926 40 HOH HOH . 
K 5 HOH A 27 927 19 HOH HOH . 
K 5 HOH A 28 928 12 HOH HOH . 
K 5 HOH A 29 929 38 HOH HOH . 
K 5 HOH A 30 930 41 HOH HOH . 
K 5 HOH A 31 931 55 HOH HOH . 
K 5 HOH A 32 932 61 HOH HOH . 
K 5 HOH A 33 933 76 HOH HOH . 
K 5 HOH A 34 934 43 HOH HOH . 
K 5 HOH A 35 935 28 HOH HOH . 
K 5 HOH A 36 936 16 HOH HOH . 
K 5 HOH A 37 937 73 HOH HOH . 
K 5 HOH A 38 938 3 HOH HOH . 
K 5 HOH A 39 939 74 HOH HOH . 
K 5 HOH A 40 940 48 HOH HOH . 
K 5 HOH A 41 941 68 HOH HOH . 
K 5 HOH A 42 942 42 HOH HOH . 
K 5 HOH A 43 943 60 HOH HOH . 
K 5 HOH A 44 944 50 HOH HOH . 
K 5 HOH A 45 945 49 HOH HOH . 
K 5 HOH A 46 946 78 HOH HOH . 
K 5 HOH A 47 947 45 HOH HOH . 
K 5 HOH A 48 948 59 HOH HOH . 
K 5 HOH A 49 949 30 HOH HOH . 
K 5 HOH A 50 950 4 HOH HOH . 
K 5 HOH A 51 951 54 HOH HOH . 
K 5 HOH A 52 952 66 HOH HOH . 
K 5 HOH A 53 953 39 HOH HOH . 
K 5 HOH A 54 954 44 HOH HOH . 
K 5 HOH A 55 955 77 HOH HOH . 
K 5 HOH A 56 956 46 HOH HOH . 
K 5 HOH A 57 957 71 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 66R . . . J 4 -10.609 -19.643 -13.809 1 148.16 ? C01 66R 809 A 1 
HETATM 2 C C02 66R . . . J 4 -9.338 -19.298 -14.275 1 137.89 ? C02 66R 809 A 1 
HETATM 3 C C03 66R . . . J 4 -8.301 -19.149 -13.326 1 153.08 ? C03 66R 809 A 1 
HETATM 4 C C04 66R . . . J 4 -8.556 -19.341 -11.965 1 149.21 ? C04 66R 809 A 1 
HETATM 5 C C05 66R . . . J 4 -9.828 -19.683 -11.525 1 146.61 ? C05 66R 809 A 1 
HETATM 6 C C06 66R . . . J 4 -10.856 -19.834 -12.442 1 148.65 ? C06 66R 809 A 1 
HETATM 7 F F07 66R . . . J 4 -7.027 -18.815 -13.68 1 166.24 ? F07 66R 809 A 1 
HETATM 8 N N08 66R . . . J 4 -9.147 -19.108 -15.769 1 118.91 ? N08 66R 809 A 1 
HETATM 9 C C09 66R . . . J 4 -10.286 -18.801 -16.625 1 123.76 ? C09 66R 809 A 1 
HETATM 10 C C10 66R . . . J 4 -10.053 -19.122 -18.12 1 132.51 ? C10 66R 809 A 1 
HETATM 11 N N11 66R . . . J 4 -8.916 -18.546 -18.645 1 136.76 ? N11 66R 809 A 1 
HETATM 12 C C12 66R . . . J 4 -7.803 -18.791 -17.866 1 122.12 ? C12 66R 809 A 1 
HETATM 13 C C13 66R . . . J 4 -7.98 -18.459 -16.373 1 114.48 ? C13 66R 809 A 1 
HETATM 14 C C14 66R . . . J 4 -8.68 -18.966 -19.855 1 143.02 ? C14 66R 809 A 1 
HETATM 15 C C15 66R . . . J 4 -9.76 -18.466 -20.913 1 144.76 ? C15 66R 809 A 1 
HETATM 16 C C16 66R . . . J 4 -10.787 -19.325 -21.345 1 150.96 ? C16 66R 809 A 1 
HETATM 17 C C17 66R . . . J 4 -11.728 -18.865 -22.286 1 142.52 ? C17 66R 809 A 1 
HETATM 18 C C18 66R . . . J 4 -11.659 -17.55 -22.79 1 141.9 ? C18 66R 809 A 1 
HETATM 19 C C19 66R . . . J 4 -10.644 -16.702 -22.356 1 145.48 ? C19 66R 809 A 1 
HETATM 20 C C20 66R . . . J 4 -9.692 -17.162 -21.415 1 145.25 ? C20 66R 809 A 1 
HETATM 21 C C21 66R . . . J 4 -10.513 -15.244 -22.874 1 131.77 ? C21 66R 809 A 1 
HETATM 22 C C22 66R . . . J 4 -11.828 -14.718 -23.467 1 121.89 ? C22 66R 809 A 1 
HETATM 23 C C23 66R . . . J 4 -11.898 -14.06 -24.613 1 124.24 ? C23 66R 809 A 1 
HETATM 24 C C24 66R . . . J 4 -10.658 -13.817 -25.428 1 127.02 ? C24 66R 809 A 1 
HETATM 25 C C25 66R . . . J 4 -9.554 -14.876 -25.219 1 148.87 ? C25 66R 809 A 1 
HETATM 26 N N26 66R . . . J 4 -9.335 -15.204 -23.765 1 143.92 ? N26 66R 809 A 1 
HETATM 27 C C27 66R . . . J 4 -8.266 -14.343 -25.747 1 162.37 ? C27 66R 809 A 1 
HETATM 28 O O28 66R . . . J 4 -8.251 -13.257 -26.379 1 162.74 ? O28 66R 809 A 1 
HETATM 29 O O29 66R . . . J 4 -7.189 -14.967 -25.548 1 185.8 -1 O29 66R 809 A 1 
HETATM 30 C C30 66R . . . J 4 -13.324 -13.722 -24.791 1 118.7 ? C30 66R 809 A 1 
HETATM 31 C C31 66R . . . J 4 -13.975 -14.204 -23.716 1 109.81 ? C31 66R 809 A 1 
HETATM 32 N N32 66R . . . J 4 -13.076 -14.8 -22.909 1 116.3 ? N32 66R 809 A 1 
HETATM 33 C C33 66R . . . J 4 -15.398 -14.028 -23.597 1 117.12 ? C33 66R 809 A 1 
HETATM 34 C C34 66R . . . J 4 -16.097 -13.359 -24.596 1 112.77 ? C34 66R 809 A 1 
HETATM 35 C C35 66R . . . J 4 -15.426 -12.865 -25.698 1 115.75 ? C35 66R 809 A 1 
HETATM 36 C C36 66R . . . J 4 -14.047 -13.035 -25.815 1 116.5 ? C36 66R 809 A 1 
HETATM 37 O O37 66R . . . J 4 -10.86 -20.645 -20.85 1 144.83 ? O37 66R 809 A 1 
HETATM 38 C C38 66R . . . J 4 -12.12 -21.074 -20.375 1 135.96 ? C38 66R 809 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           240 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           38 
#