data_5DQV
#
_model_server_result.job_id            zlpHAZ1wlWgxzadbrzIxFw 
_model_server_result.datetime_utc      '2024-12-27 03:07:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5dqv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":301}' 
#
_entry.id    5DQV 
#
_exptl.entry_id    5DQV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.693 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICKEL (II) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.13 
_cell.angle_gamma         90 
_cell.entry_id            5DQV 
_cell.length_a            47.061 
_cell.length_b            53.432 
_cell.length_c            82.61 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5DQV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 35 A HIS 29 1_555 C NI NI . A NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? 
metalc ? metalc2 A NE2 HIS 64 A HIS 58 1_555 C NI NI . A NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? 
metalc ? metalc3 A OD1 ASP 130 A ASP 124 1_555 C NI NI . A NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? 
metalc ? metalc4 C NI NI . A NI 301 1_555 E O HOH . A HOH 484 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? 
metalc ? metalc5 B NE2 HIS 35 B HIS 29 1_555 D NI NI . B NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? 
metalc ? metalc6 B NE2 HIS 64 B HIS 58 1_555 D NI NI . B NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? 
metalc ? metalc7 B OD1 ASP 130 B ASP 124 1_555 D NI NI . B NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? 
metalc ? metalc8 D NI NI . B NI 301 1_555 F O HOH . B HOH 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? 
#
_chem_comp.formula           'Ni 2' 
_chem_comp.formula_weight    58.693 
_chem_comp.id                NI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICKEL (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5DQV 
_atom_sites.fract_transf_matrix[1][1]    0.021249 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001533 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018715 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012137 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NI A 1 301 1 NI NI . 
D 2 NI B 1 301 2 NI NI . 
E 3 HOH A 1 401 193 HOH HOH . 
E 3 HOH A 2 402 90 HOH HOH . 
E 3 HOH A 3 403 224 HOH HOH . 
E 3 HOH A 4 404 131 HOH HOH . 
E 3 HOH A 5 405 98 HOH HOH . 
E 3 HOH A 6 406 171 HOH HOH . 
E 3 HOH A 7 407 198 HOH HOH . 
E 3 HOH A 8 408 172 HOH HOH . 
E 3 HOH A 9 409 9 HOH HOH . 
E 3 HOH A 10 410 192 HOH HOH . 
E 3 HOH A 11 411 107 HOH HOH . 
E 3 HOH A 12 412 143 HOH HOH . 
E 3 HOH A 13 413 51 HOH HOH . 
E 3 HOH A 14 414 34 HOH HOH . 
E 3 HOH A 15 415 95 HOH HOH . 
E 3 HOH A 16 416 70 HOH HOH . 
E 3 HOH A 17 417 104 HOH HOH . 
E 3 HOH A 18 418 24 HOH HOH . 
E 3 HOH A 19 419 196 HOH HOH . 
E 3 HOH A 20 420 56 HOH HOH . 
E 3 HOH A 21 421 82 HOH HOH . 
E 3 HOH A 22 422 66 HOH HOH . 
E 3 HOH A 23 423 52 HOH HOH . 
E 3 HOH A 24 424 139 HOH HOH . 
E 3 HOH A 25 425 78 HOH HOH . 
E 3 HOH A 26 426 29 HOH HOH . 
E 3 HOH A 27 427 132 HOH HOH . 
E 3 HOH A 28 428 14 HOH HOH . 
E 3 HOH A 29 429 100 HOH HOH . 
E 3 HOH A 30 430 11 HOH HOH . 
E 3 HOH A 31 431 137 HOH HOH . 
E 3 HOH A 32 432 220 HOH HOH . 
E 3 HOH A 33 433 4 HOH HOH . 
E 3 HOH A 34 434 8 HOH HOH . 
E 3 HOH A 35 435 20 HOH HOH . 
E 3 HOH A 36 436 32 HOH HOH . 
E 3 HOH A 37 437 218 HOH HOH . 
E 3 HOH A 38 438 18 HOH HOH . 
E 3 HOH A 39 439 39 HOH HOH . 
E 3 HOH A 40 440 13 HOH HOH . 
E 3 HOH A 41 441 119 HOH HOH . 
E 3 HOH A 42 442 21 HOH HOH . 
E 3 HOH A 43 443 212 HOH HOH . 
E 3 HOH A 44 444 61 HOH HOH . 
E 3 HOH A 45 445 43 HOH HOH . 
E 3 HOH A 46 446 130 HOH HOH . 
E 3 HOH A 47 447 17 HOH HOH . 
E 3 HOH A 48 448 128 HOH HOH . 
E 3 HOH A 49 449 88 HOH HOH . 
E 3 HOH A 50 450 42 HOH HOH . 
E 3 HOH A 51 451 142 HOH HOH . 
E 3 HOH A 52 452 62 HOH HOH . 
E 3 HOH A 53 453 174 HOH HOH . 
E 3 HOH A 54 454 23 HOH HOH . 
E 3 HOH A 55 455 141 HOH HOH . 
E 3 HOH A 56 456 50 HOH HOH . 
E 3 HOH A 57 457 22 HOH HOH . 
E 3 HOH A 58 458 15 HOH HOH . 
E 3 HOH A 59 459 77 HOH HOH . 
E 3 HOH A 60 460 138 HOH HOH . 
E 3 HOH A 61 461 210 HOH HOH . 
E 3 HOH A 62 462 49 HOH HOH . 
E 3 HOH A 63 463 87 HOH HOH . 
E 3 HOH A 64 464 16 HOH HOH . 
E 3 HOH A 65 465 10 HOH HOH . 
E 3 HOH A 66 466 72 HOH HOH . 
E 3 HOH A 67 467 208 HOH HOH . 
E 3 HOH A 68 468 38 HOH HOH . 
E 3 HOH A 69 469 25 HOH HOH . 
E 3 HOH A 70 470 27 HOH HOH . 
E 3 HOH A 71 471 215 HOH HOH . 
E 3 HOH A 72 472 28 HOH HOH . 
E 3 HOH A 73 473 35 HOH HOH . 
E 3 HOH A 74 474 58 HOH HOH . 
E 3 HOH A 75 475 102 HOH HOH . 
E 3 HOH A 76 476 147 HOH HOH . 
E 3 HOH A 77 477 173 HOH HOH . 
E 3 HOH A 78 478 7 HOH HOH . 
E 3 HOH A 79 479 60 HOH HOH . 
E 3 HOH A 80 480 19 HOH HOH . 
E 3 HOH A 81 481 5 HOH HOH . 
E 3 HOH A 82 482 97 HOH HOH . 
E 3 HOH A 83 483 6 HOH HOH . 
E 3 HOH A 84 484 1 HOH HOH . 
E 3 HOH A 85 485 68 HOH HOH . 
E 3 HOH A 86 486 101 HOH HOH . 
E 3 HOH A 87 487 182 HOH HOH . 
E 3 HOH A 88 488 79 HOH HOH . 
E 3 HOH A 89 489 156 HOH HOH . 
E 3 HOH A 90 490 110 HOH HOH . 
E 3 HOH A 91 491 84 HOH HOH . 
E 3 HOH A 92 492 40 HOH HOH . 
E 3 HOH A 93 493 44 HOH HOH . 
E 3 HOH A 94 494 228 HOH HOH . 
E 3 HOH A 95 495 149 HOH HOH . 
E 3 HOH A 96 496 103 HOH HOH . 
E 3 HOH A 97 497 144 HOH HOH . 
F 3 HOH B 1 401 33 HOH HOH . 
F 3 HOH B 2 402 71 HOH HOH . 
F 3 HOH B 3 403 134 HOH HOH . 
F 3 HOH B 4 404 59 HOH HOH . 
F 3 HOH B 5 405 199 HOH HOH . 
F 3 HOH B 6 406 96 HOH HOH . 
F 3 HOH B 7 407 140 HOH HOH . 
F 3 HOH B 8 408 3 HOH HOH . 
F 3 HOH B 9 409 113 HOH HOH . 
F 3 HOH B 10 410 57 HOH HOH . 
F 3 HOH B 11 411 30 HOH HOH . 
F 3 HOH B 12 412 89 HOH HOH . 
F 3 HOH B 13 413 65 HOH HOH . 
F 3 HOH B 14 414 80 HOH HOH . 
F 3 HOH B 15 415 203 HOH HOH . 
F 3 HOH B 16 416 99 HOH HOH . 
F 3 HOH B 17 417 111 HOH HOH . 
F 3 HOH B 18 418 214 HOH HOH . 
F 3 HOH B 19 419 2 HOH HOH . 
F 3 HOH B 20 420 158 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NI 
_atom_site.label_atom_id         NI 
_atom_site.label_comp_id         NI 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               25.788 
_atom_site.Cartn_y               -27.262 
_atom_site.Cartn_z               31.508 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        44.43 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NI 
_atom_site.auth_comp_id          NI 
_atom_site.auth_seq_id           301 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              57 
_model_server_stats.parse_time_ms           33 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#