data_5DQY
#
_model_server_result.job_id            Cec_t1DtYKxz6nBdKd-7xA 
_model_server_result.datetime_utc      '2024-11-23 11:28:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5dqy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    5DQY 
#
_exptl.entry_id    5DQY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              122.121 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'BENZOIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5DQY 
_cell.length_a            53.204 
_cell.length_b            61.231 
_cell.length_c            64.839 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5DQY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E 1 1 
A,B,C,D,E 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 32 A CYS 32 1_555 A SG CYS 35 A CYS 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? 
disulf ? disulf2 A SG CYS 62 A CYS 62 1_555 A SG CYS 69 A CYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? 
disulf ? disulf3 A SG CYS 73 A CYS 73 1_555 A SG CYS 73 A CYS 73 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
#
_chem_comp.formula           'C7 H6 O2' 
_chem_comp.formula_weight    122.121 
_chem_comp.id                BEZ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'BENZOIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O1 BEZ doub 44 n n 
C O2 BEZ sing 45 n n 
C C1 BEZ sing 46 n n 
O2 HO2 BEZ sing 47 n n 
C1 C2 BEZ doub 48 n y 
C1 C6 BEZ sing 49 n y 
C2 C3 BEZ sing 50 n y 
C2 H2 BEZ sing 51 n n 
C3 C4 BEZ doub 52 n y 
C3 H3 BEZ sing 53 n n 
C4 C5 BEZ sing 54 n y 
C4 H4 BEZ sing 55 n n 
C5 C6 BEZ doub 56 n y 
C5 H5 BEZ sing 57 n n 
C6 H6 BEZ sing 58 n n 
#
_atom_sites.entry_id                     5DQY 
_atom_sites.fract_transf_matrix[1][1]    0.018796 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016332 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015423 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 BEZ A 1 401 401 BEZ BEZ . 
C 3 CL A 1 402 601 CL CL . 
D 4 GOL A 1 403 801 GOL GOL . 
E 5 HOH A 1 501 41 HOH HOH . 
E 5 HOH A 2 502 85 HOH HOH . 
E 5 HOH A 3 503 106 HOH HOH . 
E 5 HOH A 4 504 15 HOH HOH . 
E 5 HOH A 5 505 58 HOH HOH . 
E 5 HOH A 6 506 65 HOH HOH . 
E 5 HOH A 7 507 13 HOH HOH . 
E 5 HOH A 8 508 80 HOH HOH . 
E 5 HOH A 9 509 52 HOH HOH . 
E 5 HOH A 10 510 2 HOH HOH . 
E 5 HOH A 11 511 4 HOH HOH . 
E 5 HOH A 12 512 74 HOH HOH . 
E 5 HOH A 13 513 36 HOH HOH . 
E 5 HOH A 14 514 16 HOH HOH . 
E 5 HOH A 15 515 76 HOH HOH . 
E 5 HOH A 16 516 27 HOH HOH . 
E 5 HOH A 17 517 102 HOH HOH . 
E 5 HOH A 18 518 17 HOH HOH . 
E 5 HOH A 19 519 47 HOH HOH . 
E 5 HOH A 20 520 7 HOH HOH . 
E 5 HOH A 21 521 101 HOH HOH . 
E 5 HOH A 22 522 67 HOH HOH . 
E 5 HOH A 23 523 3 HOH HOH . 
E 5 HOH A 24 524 71 HOH HOH . 
E 5 HOH A 25 525 1 HOH HOH . 
E 5 HOH A 26 526 57 HOH HOH . 
E 5 HOH A 27 527 35 HOH HOH . 
E 5 HOH A 28 528 8 HOH HOH . 
E 5 HOH A 29 529 63 HOH HOH . 
E 5 HOH A 30 530 11 HOH HOH . 
E 5 HOH A 31 531 5 HOH HOH . 
E 5 HOH A 32 532 9 HOH HOH . 
E 5 HOH A 33 533 26 HOH HOH . 
E 5 HOH A 34 534 73 HOH HOH . 
E 5 HOH A 35 535 53 HOH HOH . 
E 5 HOH A 36 536 79 HOH HOH . 
E 5 HOH A 37 537 62 HOH HOH . 
E 5 HOH A 38 538 75 HOH HOH . 
E 5 HOH A 39 539 46 HOH HOH . 
E 5 HOH A 40 540 31 HOH HOH . 
E 5 HOH A 41 541 25 HOH HOH . 
E 5 HOH A 42 542 70 HOH HOH . 
E 5 HOH A 43 543 94 HOH HOH . 
E 5 HOH A 44 544 54 HOH HOH . 
E 5 HOH A 45 545 23 HOH HOH . 
E 5 HOH A 46 546 49 HOH HOH . 
E 5 HOH A 47 547 40 HOH HOH . 
E 5 HOH A 48 548 43 HOH HOH . 
E 5 HOH A 49 549 18 HOH HOH . 
E 5 HOH A 50 550 44 HOH HOH . 
E 5 HOH A 51 551 50 HOH HOH . 
E 5 HOH A 52 552 105 HOH HOH . 
E 5 HOH A 53 553 104 HOH HOH . 
E 5 HOH A 54 554 21 HOH HOH . 
E 5 HOH A 55 555 10 HOH HOH . 
E 5 HOH A 56 556 24 HOH HOH . 
E 5 HOH A 57 557 110 HOH HOH . 
E 5 HOH A 58 558 29 HOH HOH . 
E 5 HOH A 59 559 12 HOH HOH . 
E 5 HOH A 60 560 37 HOH HOH . 
E 5 HOH A 61 561 45 HOH HOH . 
E 5 HOH A 62 562 56 HOH HOH . 
E 5 HOH A 63 563 48 HOH HOH . 
E 5 HOH A 64 564 33 HOH HOH . 
E 5 HOH A 65 565 103 HOH HOH . 
E 5 HOH A 66 566 14 HOH HOH . 
E 5 HOH A 67 567 64 HOH HOH . 
E 5 HOH A 68 568 22 HOH HOH . 
E 5 HOH A 69 569 34 HOH HOH . 
E 5 HOH A 70 570 19 HOH HOH . 
E 5 HOH A 71 571 97 HOH HOH . 
E 5 HOH A 72 572 20 HOH HOH . 
E 5 HOH A 73 573 6 HOH HOH . 
E 5 HOH A 74 574 95 HOH HOH . 
E 5 HOH A 75 575 59 HOH HOH . 
E 5 HOH A 76 576 108 HOH HOH . 
E 5 HOH A 77 577 69 HOH HOH . 
E 5 HOH A 78 578 60 HOH HOH . 
E 5 HOH A 79 579 61 HOH HOH . 
E 5 HOH A 80 580 81 HOH HOH . 
E 5 HOH A 81 581 28 HOH HOH . 
E 5 HOH A 82 582 72 HOH HOH . 
E 5 HOH A 83 583 107 HOH HOH . 
E 5 HOH A 84 584 68 HOH HOH . 
E 5 HOH A 85 585 98 HOH HOH . 
E 5 HOH A 86 586 90 HOH HOH . 
E 5 HOH A 87 587 96 HOH HOH . 
E 5 HOH A 88 588 83 HOH HOH . 
E 5 HOH A 89 589 84 HOH HOH . 
E 5 HOH A 90 590 39 HOH HOH . 
E 5 HOH A 91 591 55 HOH HOH . 
E 5 HOH A 92 592 51 HOH HOH . 
E 5 HOH A 93 593 100 HOH HOH . 
E 5 HOH A 94 594 88 HOH HOH . 
E 5 HOH A 95 595 82 HOH HOH . 
E 5 HOH A 96 596 93 HOH HOH . 
E 5 HOH A 97 597 32 HOH HOH . 
E 5 HOH A 98 598 66 HOH HOH . 
E 5 HOH A 99 599 112 HOH HOH . 
E 5 HOH A 100 600 87 HOH HOH . 
E 5 HOH A 101 601 38 HOH HOH . 
E 5 HOH A 102 602 78 HOH HOH . 
E 5 HOH A 103 603 42 HOH HOH . 
E 5 HOH A 104 604 77 HOH HOH . 
E 5 HOH A 105 605 109 HOH HOH . 
E 5 HOH A 106 606 30 HOH HOH . 
E 5 HOH A 107 607 111 HOH HOH . 
E 5 HOH A 108 608 91 HOH HOH . 
E 5 HOH A 109 609 99 HOH HOH . 
E 5 HOH A 110 610 92 HOH HOH . 
E 5 HOH A 111 611 89 HOH HOH . 
E 5 HOH A 112 612 86 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C BEZ . . . B 2 6.275 12.132 0.157 1 13.56 ? C BEZ 401 A 1 
HETATM 2 O O1 BEZ . . . B 2 5.92 11.396 -0.808 1 17.12 ? O1 BEZ 401 A 1 
HETATM 3 O O2 BEZ . . . B 2 6.961 13.198 0.051 1 17.81 ? O2 BEZ 401 A 1 
HETATM 4 C C1 BEZ . . . B 2 5.896 11.678 1.547 1 12.9 ? C1 BEZ 401 A 1 
HETATM 5 C C2 BEZ . . . B 2 6.703 12.074 2.619 1 13.13 ? C2 BEZ 401 A 1 
HETATM 6 C C3 BEZ . . . B 2 6.447 11.609 3.941 1 16.22 ? C3 BEZ 401 A 1 
HETATM 7 C C4 BEZ . . . B 2 5.364 10.713 4.179 1 15.8 ? C4 BEZ 401 A 1 
HETATM 8 C C5 BEZ . . . B 2 4.558 10.322 3.092 1 13.96 ? C5 BEZ 401 A 1 
HETATM 9 C C6 BEZ . . . B 2 4.807 10.799 1.752 1 16.55 ? C6 BEZ 401 A 1 
#
_model_server_stats.io_time_ms              60 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    1 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          16 
_model_server_stats.element_count           9 
#