data_5DR8 # _model_server_result.job_id Ce9KYgyd5De0ceOp3KiXCA _model_server_result.datetime_utc '2024-11-12 22:19:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dr8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 5DR8 # _exptl.entry_id 5DR8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 59.044 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.58 _cell.angle_gamma 90 _cell.entry_id 5DR8 _cell.length_a 45.305 _cell.length_b 73.176 _cell.length_c 52.911 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DR8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details Monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 255 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 255 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 290 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 290 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.037 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H3 O2 -1' _chem_comp.formula_weight 59.044 _chem_comp.id ACT _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACT doub 19 n n C OXT ACT sing 20 n n C CH3 ACT sing 21 n n CH3 H1 ACT sing 22 n n CH3 H2 ACT sing 23 n n CH3 H3 ACT sing 24 n n # _atom_sites.entry_id 5DR8 _atom_sites.fract_transf_matrix[1][1] 0.022073 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00785 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013666 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020059 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5G1 A 1 401 401 5G1 XXX . C 3 GOL A 1 402 402 GOL GOL . D 4 ACT A 1 403 403 ACT ACT . E 5 PGE A 1 404 404 PGE PGE . F 6 HOH A 1 509 509 HOH HOH . F 6 HOH A 2 533 533 HOH HOH . F 6 HOH A 3 537 537 HOH HOH . F 6 HOH A 4 538 538 HOH HOH . F 6 HOH A 5 540 540 HOH HOH . F 6 HOH A 6 569 569 HOH HOH . F 6 HOH A 7 582 582 HOH HOH . F 6 HOH A 8 588 588 HOH HOH . F 6 HOH A 9 589 589 HOH HOH . F 6 HOH A 10 612 612 HOH HOH . F 6 HOH A 11 621 621 HOH HOH . F 6 HOH A 12 629 629 HOH HOH . F 6 HOH A 13 638 638 HOH HOH . F 6 HOH A 14 645 645 HOH HOH . F 6 HOH A 15 674 674 HOH HOH . F 6 HOH A 16 677 677 HOH HOH . F 6 HOH A 17 678 678 HOH HOH . F 6 HOH A 18 686 686 HOH HOH . F 6 HOH A 19 690 690 HOH HOH . F 6 HOH A 20 696 696 HOH HOH . F 6 HOH A 21 731 731 HOH HOH . F 6 HOH A 22 733 733 HOH HOH . F 6 HOH A 23 738 738 HOH HOH . F 6 HOH A 24 744 744 HOH HOH . F 6 HOH A 25 747 747 HOH HOH . F 6 HOH A 26 748 748 HOH HOH . F 6 HOH A 27 760 760 HOH HOH . F 6 HOH A 28 775 775 HOH HOH . F 6 HOH A 29 786 786 HOH HOH . F 6 HOH A 30 798 798 HOH HOH . F 6 HOH A 31 804 804 HOH HOH . F 6 HOH A 32 807 807 HOH HOH . F 6 HOH A 33 808 808 HOH HOH . F 6 HOH A 34 813 813 HOH HOH . F 6 HOH A 35 819 819 HOH HOH . F 6 HOH A 36 826 826 HOH HOH . F 6 HOH A 37 830 830 HOH HOH . F 6 HOH A 38 835 835 HOH HOH . F 6 HOH A 39 852 852 HOH HOH . F 6 HOH A 40 864 864 HOH HOH . F 6 HOH A 41 867 867 HOH HOH . F 6 HOH A 42 877 877 HOH HOH . F 6 HOH A 43 881 881 HOH HOH . F 6 HOH A 44 883 883 HOH HOH . F 6 HOH A 45 895 895 HOH HOH . F 6 HOH A 46 896 896 HOH HOH . F 6 HOH A 47 897 897 HOH HOH . F 6 HOH A 48 905 905 HOH HOH . F 6 HOH A 49 925 925 HOH HOH . F 6 HOH A 50 932 932 HOH HOH . F 6 HOH A 51 938 938 HOH HOH . F 6 HOH A 52 948 948 HOH HOH . F 6 HOH A 53 950 950 HOH HOH . F 6 HOH A 54 955 955 HOH HOH . F 6 HOH A 55 957 957 HOH HOH . F 6 HOH A 56 959 959 HOH HOH . F 6 HOH A 57 969 969 HOH HOH . F 6 HOH A 58 970 970 HOH HOH . F 6 HOH A 59 971 971 HOH HOH . F 6 HOH A 60 978 978 HOH HOH . F 6 HOH A 61 988 988 HOH HOH . F 6 HOH A 62 992 992 HOH HOH . F 6 HOH A 63 995 995 HOH HOH . F 6 HOH A 64 996 996 HOH HOH . F 6 HOH A 65 1005 1005 HOH HOH . F 6 HOH A 66 1010 1010 HOH HOH . F 6 HOH A 67 1014 1014 HOH HOH . F 6 HOH A 68 1015 1015 HOH HOH . F 6 HOH A 69 1038 1038 HOH HOH . F 6 HOH A 70 1046 1046 HOH HOH . F 6 HOH A 71 1058 1058 HOH HOH . F 6 HOH A 72 1070 1070 HOH HOH . F 6 HOH A 73 1079 1079 HOH HOH . F 6 HOH A 74 1081 1081 HOH HOH . F 6 HOH A 75 1089 1089 HOH HOH . F 6 HOH A 76 1092 1092 HOH HOH . F 6 HOH A 77 1095 1095 HOH HOH . F 6 HOH A 78 1096 1096 HOH HOH . F 6 HOH A 79 1107 1107 HOH HOH . F 6 HOH A 80 1110 1110 HOH HOH . F 6 HOH A 81 1111 1111 HOH HOH . F 6 HOH A 82 1115 1115 HOH HOH . F 6 HOH A 83 1118 1118 HOH HOH . F 6 HOH A 84 1124 1124 HOH HOH . F 6 HOH A 85 1125 1125 HOH HOH . F 6 HOH A 86 1149 1149 HOH HOH . F 6 HOH A 87 1161 1161 HOH HOH . F 6 HOH A 88 1167 1167 HOH HOH . F 6 HOH A 89 1169 1169 HOH HOH . F 6 HOH A 90 1172 1172 HOH HOH . F 6 HOH A 91 1173 1173 HOH HOH . F 6 HOH A 92 1180 1180 HOH HOH . F 6 HOH A 93 1190 1190 HOH HOH . F 6 HOH A 94 1207 1207 HOH HOH . F 6 HOH A 95 1210 1210 HOH HOH . F 6 HOH A 96 1219 1219 HOH HOH . F 6 HOH A 97 1221 1221 HOH HOH . F 6 HOH A 98 1223 1223 HOH HOH . F 6 HOH A 99 1225 1225 HOH HOH . F 6 HOH A 100 1226 1226 HOH HOH . F 6 HOH A 101 1232 1232 HOH HOH . F 6 HOH A 102 1236 1236 HOH HOH . F 6 HOH A 103 1237 1237 HOH HOH . F 6 HOH A 104 1244 1244 HOH HOH . F 6 HOH A 105 1246 1246 HOH HOH . F 6 HOH A 106 1260 1260 HOH HOH . F 6 HOH A 107 1282 1282 HOH HOH . F 6 HOH A 108 1286 1286 HOH HOH . F 6 HOH A 109 1290 1290 HOH HOH . F 6 HOH A 110 1292 1292 HOH HOH . F 6 HOH A 111 1293 1293 HOH HOH . F 6 HOH A 112 1299 1299 HOH HOH . F 6 HOH A 113 1302 1302 HOH HOH . F 6 HOH A 114 1304 1304 HOH HOH . F 6 HOH A 115 1306 1306 HOH HOH . F 6 HOH A 116 1307 1307 HOH HOH . F 6 HOH A 117 1308 1308 HOH HOH . F 6 HOH A 118 1316 1316 HOH HOH . F 6 HOH A 119 1329 1329 HOH HOH . F 6 HOH A 120 1340 1340 HOH HOH . F 6 HOH A 121 1349 1349 HOH HOH . F 6 HOH A 122 1354 1354 HOH HOH . F 6 HOH A 123 1359 1359 HOH HOH . F 6 HOH A 124 1361 1361 HOH HOH . F 6 HOH A 125 1365 1365 HOH HOH . F 6 HOH A 126 1369 1369 HOH HOH . F 6 HOH A 127 1384 1384 HOH HOH . F 6 HOH A 128 1394 1394 HOH HOH . F 6 HOH A 129 1401 1401 HOH HOH . F 6 HOH A 130 1407 1407 HOH HOH . F 6 HOH A 131 1410 1410 HOH HOH . F 6 HOH A 132 1417 1417 HOH HOH . F 6 HOH A 133 1419 1419 HOH HOH . F 6 HOH A 134 1421 1421 HOH HOH . F 6 HOH A 135 1441 1441 HOH HOH . F 6 HOH A 136 1454 1454 HOH HOH . F 6 HOH A 137 1459 1459 HOH HOH . F 6 HOH A 138 1461 1461 HOH HOH . F 6 HOH A 139 1463 1463 HOH HOH . F 6 HOH A 140 1475 1475 HOH HOH . F 6 HOH A 141 1486 1486 HOH HOH . F 6 HOH A 142 1498 1498 HOH HOH . F 6 HOH A 143 1503 1503 HOH HOH . F 6 HOH A 144 1515 1515 HOH HOH . F 6 HOH A 145 1523 1523 HOH HOH . F 6 HOH A 146 1535 1535 HOH HOH . F 6 HOH A 147 1538 1538 HOH HOH . F 6 HOH A 148 1540 1540 HOH HOH . F 6 HOH A 149 1550 1550 HOH HOH . F 6 HOH A 150 1562 1562 HOH HOH . F 6 HOH A 151 1565 1565 HOH HOH . F 6 HOH A 152 1566 1566 HOH HOH . F 6 HOH A 153 1572 1572 HOH HOH . F 6 HOH A 154 1581 1581 HOH HOH . F 6 HOH A 155 1593 1593 HOH HOH . F 6 HOH A 156 1594 1594 HOH HOH . F 6 HOH A 157 1595 1595 HOH HOH . F 6 HOH A 158 1610 1610 HOH HOH . F 6 HOH A 159 1612 1612 HOH HOH . F 6 HOH A 160 1627 1627 HOH HOH . F 6 HOH A 161 1631 1631 HOH HOH . F 6 HOH A 162 1637 1637 HOH HOH . F 6 HOH A 163 1638 1638 HOH HOH . F 6 HOH A 164 1640 1640 HOH HOH . F 6 HOH A 165 1645 1645 HOH HOH . F 6 HOH A 166 1651 1651 HOH HOH . F 6 HOH A 167 1658 1658 HOH HOH . F 6 HOH A 168 1665 1665 HOH HOH . F 6 HOH A 169 1672 1672 HOH HOH . F 6 HOH A 170 1682 1682 HOH HOH . F 6 HOH A 171 1689 1689 HOH HOH . F 6 HOH A 172 1690 1690 HOH HOH . F 6 HOH A 173 1694 1694 HOH HOH . F 6 HOH A 174 1699 1699 HOH HOH . F 6 HOH A 175 1700 1700 HOH HOH . F 6 HOH A 176 1706 1706 HOH HOH . F 6 HOH A 177 1709 1709 HOH HOH . F 6 HOH A 178 1716 1716 HOH HOH . F 6 HOH A 179 1718 1718 HOH HOH . F 6 HOH A 180 1731 1731 HOH HOH . F 6 HOH A 181 1739 1739 HOH HOH . F 6 HOH A 182 1745 1745 HOH HOH . F 6 HOH A 183 1757 1757 HOH HOH . F 6 HOH A 184 1772 1772 HOH HOH . F 6 HOH A 185 1776 1776 HOH HOH . F 6 HOH A 186 1782 1782 HOH HOH . F 6 HOH A 187 1784 1784 HOH HOH . F 6 HOH A 188 1792 1792 HOH HOH . F 6 HOH A 189 1805 1805 HOH HOH . F 6 HOH A 190 1820 1820 HOH HOH . F 6 HOH A 191 1832 1832 HOH HOH . F 6 HOH A 192 1834 1834 HOH HOH . F 6 HOH A 193 1836 1836 HOH HOH . F 6 HOH A 194 1839 1839 HOH HOH . F 6 HOH A 195 1844 1844 HOH HOH . F 6 HOH A 196 1851 1851 HOH HOH . F 6 HOH A 197 1853 1853 HOH HOH . F 6 HOH A 198 1857 1857 HOH HOH . F 6 HOH A 199 1883 1883 HOH HOH . F 6 HOH A 200 1894 1894 HOH HOH . F 6 HOH A 201 1906 1906 HOH HOH . F 6 HOH A 202 1928 1928 HOH HOH . F 6 HOH A 203 1932 1932 HOH HOH . F 6 HOH A 204 1936 1936 HOH HOH . F 6 HOH A 205 1958 1958 HOH HOH . F 6 HOH A 206 1964 1964 HOH HOH . F 6 HOH A 207 1977 1977 HOH HOH . F 6 HOH A 208 1980 1980 HOH HOH . F 6 HOH A 209 1987 1987 HOH HOH . F 6 HOH A 210 1997 1997 HOH HOH . F 6 HOH A 211 1999 1999 HOH HOH . F 6 HOH A 212 2010 2010 HOH HOH . F 6 HOH A 213 2037 2037 HOH HOH . F 6 HOH A 214 2041 2041 HOH HOH . F 6 HOH A 215 2055 2055 HOH HOH . F 6 HOH A 216 2057 2057 HOH HOH . F 6 HOH A 217 2060 2060 HOH HOH . F 6 HOH A 218 2070 2070 HOH HOH . F 6 HOH A 219 2085 2085 HOH HOH . F 6 HOH A 220 2093 2093 HOH HOH . F 6 HOH A 221 2102 2102 HOH HOH . F 6 HOH A 222 2107 2107 HOH HOH . F 6 HOH A 223 2110 2110 HOH HOH . F 6 HOH A 224 2125 2125 HOH HOH . F 6 HOH A 225 2137 2137 HOH HOH . F 6 HOH A 226 2140 2140 HOH HOH . F 6 HOH A 227 2151 2151 HOH HOH . F 6 HOH A 228 2159 2159 HOH HOH . F 6 HOH A 229 2161 2161 HOH HOH . F 6 HOH A 230 2162 2162 HOH HOH . F 6 HOH A 231 2163 2163 HOH HOH . F 6 HOH A 232 2164 2164 HOH HOH . F 6 HOH A 233 2166 2166 HOH HOH . F 6 HOH A 234 2167 2167 HOH HOH . F 6 HOH A 235 2168 2168 HOH HOH . F 6 HOH A 236 2180 2180 HOH HOH . F 6 HOH A 237 2198 2198 HOH HOH . F 6 HOH A 238 2216 2216 HOH HOH . F 6 HOH A 239 2227 2227 HOH HOH . F 6 HOH A 240 2247 2247 HOH HOH . F 6 HOH A 241 2250 2250 HOH HOH . F 6 HOH A 242 2291 2291 HOH HOH . F 6 HOH A 243 2307 2307 HOH HOH . F 6 HOH A 244 2312 2312 HOH HOH . F 6 HOH A 245 2327 2327 HOH HOH . F 6 HOH A 246 2330 2330 HOH HOH . F 6 HOH A 247 2331 2331 HOH HOH . F 6 HOH A 248 2339 2339 HOH HOH . F 6 HOH A 249 2344 2344 HOH HOH . F 6 HOH A 250 2357 2357 HOH HOH . F 6 HOH A 251 2364 2364 HOH HOH . F 6 HOH A 252 2404 2404 HOH HOH . F 6 HOH A 253 2426 2426 HOH HOH . F 6 HOH A 254 2451 2451 HOH HOH . F 6 HOH A 255 2459 2459 HOH HOH . F 6 HOH A 256 2483 2483 HOH HOH . F 6 HOH A 257 2505 2505 HOH HOH . F 6 HOH A 258 2518 2518 HOH HOH . F 6 HOH A 259 2520 2520 HOH HOH . F 6 HOH A 260 2533 2533 HOH HOH . F 6 HOH A 261 2535 2535 HOH HOH . F 6 HOH A 262 2539 2539 HOH HOH . F 6 HOH A 263 2540 2540 HOH HOH . F 6 HOH A 264 2611 2611 HOH HOH . F 6 HOH A 265 2643 2643 HOH HOH . F 6 HOH A 266 2657 2657 HOH HOH . F 6 HOH A 267 2660 2660 HOH HOH . F 6 HOH A 268 2669 2669 HOH HOH . F 6 HOH A 269 2677 2677 HOH HOH . F 6 HOH A 270 2679 2679 HOH HOH . F 6 HOH A 271 2688 2688 HOH HOH . F 6 HOH A 272 2694 2694 HOH HOH . F 6 HOH A 273 2712 2712 HOH HOH . F 6 HOH A 274 2735 2735 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACT . . . D 4 -12.838 -2.863 -10.191 1 28.61 ? C ACT 403 A 1 HETATM 2 O O ACT . . . D 4 -14.007 -3.276 -9.996 1 28.04 ? O ACT 403 A 1 HETATM 3 O OXT ACT . . . D 4 -12.027 -3.111 -9.271 1 27.68 ? OXT ACT 403 A 1 HETATM 4 C CH3 ACT . . . D 4 -12.437 -2.122 -11.439 1 29.51 ? CH3 ACT 403 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #