data_5DRG # _model_server_result.job_id tBI40XHs6tPOM7ikdsnrrA _model_server_result.datetime_utc '2024-10-18 16:29:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5drg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 5DRG # _exptl.entry_id 5DRG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.46 _cell.angle_gamma 90 _cell.entry_id 5DRG _cell.length_a 44.994 _cell.length_b 51.289 _cell.length_c 47.94 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DRG _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 76 A LEU 64 1_555 A N1 CRF 77 A CRF 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? metalc ? metalc1 A O PHE 20 A PHE 8 1_555 C NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.813 ? metalc ? metalc2 A O THR 21 A THR 9 1_555 C NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.189 ? metalc ? metalc3 A O GLY 22 A GLY 10 1_555 C NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.151 ? metalc ? metalc4 A OD1 ASP 48 A ASP 36 1_555 C NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? metalc ? metalc5 A OG1 THR 50 A THR 38 1_555 C NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5DRG _atom_sites.fract_transf_matrix[1][1] 0.022225 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002124 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019497 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020954 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 301 1 GOL GOL . C 3 NA A 1 302 1 NA NA . D 4 HOH A 1 401 210 HOH HOH . D 4 HOH A 2 402 242 HOH HOH . D 4 HOH A 3 403 232 HOH HOH . D 4 HOH A 4 404 296 HOH HOH . D 4 HOH A 5 405 255 HOH HOH . D 4 HOH A 6 406 240 HOH HOH . D 4 HOH A 7 407 83 HOH HOH . D 4 HOH A 8 408 109 HOH HOH . D 4 HOH A 9 409 54 HOH HOH . D 4 HOH A 10 410 179 HOH HOH . D 4 HOH A 11 411 72 HOH HOH . D 4 HOH A 12 412 103 HOH HOH . D 4 HOH A 13 413 99 HOH HOH . D 4 HOH A 14 414 86 HOH HOH . D 4 HOH A 15 415 164 HOH HOH . D 4 HOH A 16 416 56 HOH HOH . D 4 HOH A 17 417 160 HOH HOH . D 4 HOH A 18 418 205 HOH HOH . D 4 HOH A 19 419 9 HOH HOH . D 4 HOH A 20 420 282 HOH HOH . D 4 HOH A 21 421 216 HOH HOH . D 4 HOH A 22 422 238 HOH HOH . D 4 HOH A 23 423 74 HOH HOH . D 4 HOH A 24 424 95 HOH HOH . D 4 HOH A 25 425 35 HOH HOH . D 4 HOH A 26 426 107 HOH HOH . D 4 HOH A 27 427 122 HOH HOH . D 4 HOH A 28 428 88 HOH HOH . D 4 HOH A 29 429 94 HOH HOH . D 4 HOH A 30 430 82 HOH HOH . D 4 HOH A 31 431 222 HOH HOH . D 4 HOH A 32 432 37 HOH HOH . D 4 HOH A 33 433 212 HOH HOH . D 4 HOH A 34 434 295 HOH HOH . D 4 HOH A 35 435 118 HOH HOH . D 4 HOH A 36 436 75 HOH HOH . D 4 HOH A 37 437 52 HOH HOH . D 4 HOH A 38 438 91 HOH HOH . D 4 HOH A 39 439 4 HOH HOH . D 4 HOH A 40 440 169 HOH HOH . D 4 HOH A 41 441 199 HOH HOH . D 4 HOH A 42 442 41 HOH HOH . D 4 HOH A 43 443 14 HOH HOH . D 4 HOH A 44 444 189 HOH HOH . D 4 HOH A 45 445 221 HOH HOH . D 4 HOH A 46 446 53 HOH HOH . D 4 HOH A 47 447 6 HOH HOH . D 4 HOH A 48 448 236 HOH HOH . D 4 HOH A 49 449 47 HOH HOH . D 4 HOH A 50 450 137 HOH HOH . D 4 HOH A 51 451 20 HOH HOH . D 4 HOH A 52 452 70 HOH HOH . D 4 HOH A 53 453 158 HOH HOH . D 4 HOH A 54 454 161 HOH HOH . D 4 HOH A 55 455 196 HOH HOH . D 4 HOH A 56 456 262 HOH HOH . D 4 HOH A 57 457 7 HOH HOH . D 4 HOH A 58 458 190 HOH HOH . D 4 HOH A 59 459 214 HOH HOH . D 4 HOH A 60 460 22 HOH HOH . D 4 HOH A 61 461 138 HOH HOH . D 4 HOH A 62 462 163 HOH HOH . D 4 HOH A 63 463 31 HOH HOH . D 4 HOH A 64 464 130 HOH HOH . D 4 HOH A 65 465 38 HOH HOH . D 4 HOH A 66 466 11 HOH HOH . D 4 HOH A 67 467 201 HOH HOH . D 4 HOH A 68 468 61 HOH HOH . D 4 HOH A 69 469 286 HOH HOH . D 4 HOH A 70 470 106 HOH HOH . D 4 HOH A 71 471 150 HOH HOH . D 4 HOH A 72 472 30 HOH HOH . D 4 HOH A 73 473 141 HOH HOH . D 4 HOH A 74 474 16 HOH HOH . D 4 HOH A 75 475 263 HOH HOH . D 4 HOH A 76 476 259 HOH HOH . D 4 HOH A 77 477 193 HOH HOH . D 4 HOH A 78 478 140 HOH HOH . D 4 HOH A 79 479 227 HOH HOH . D 4 HOH A 80 480 144 HOH HOH . D 4 HOH A 81 481 36 HOH HOH . D 4 HOH A 82 482 10 HOH HOH . D 4 HOH A 83 483 165 HOH HOH . D 4 HOH A 84 484 39 HOH HOH . D 4 HOH A 85 485 139 HOH HOH . D 4 HOH A 86 486 42 HOH HOH . D 4 HOH A 87 487 115 HOH HOH . D 4 HOH A 88 488 170 HOH HOH . D 4 HOH A 89 489 245 HOH HOH . D 4 HOH A 90 490 225 HOH HOH . D 4 HOH A 91 491 108 HOH HOH . D 4 HOH A 92 492 105 HOH HOH . D 4 HOH A 93 493 98 HOH HOH . D 4 HOH A 94 494 117 HOH HOH . D 4 HOH A 95 495 34 HOH HOH . D 4 HOH A 96 496 92 HOH HOH . D 4 HOH A 97 497 48 HOH HOH . D 4 HOH A 98 498 224 HOH HOH . D 4 HOH A 99 499 65 HOH HOH . D 4 HOH A 100 500 195 HOH HOH . D 4 HOH A 101 501 168 HOH HOH . D 4 HOH A 102 502 13 HOH HOH . D 4 HOH A 103 503 79 HOH HOH . D 4 HOH A 104 504 112 HOH HOH . D 4 HOH A 105 505 293 HOH HOH . D 4 HOH A 106 506 25 HOH HOH . D 4 HOH A 107 507 43 HOH HOH . D 4 HOH A 108 508 19 HOH HOH . D 4 HOH A 109 509 104 HOH HOH . D 4 HOH A 110 510 93 HOH HOH . D 4 HOH A 111 511 197 HOH HOH . D 4 HOH A 112 512 45 HOH HOH . D 4 HOH A 113 513 208 HOH HOH . D 4 HOH A 114 514 2 HOH HOH . D 4 HOH A 115 515 142 HOH HOH . D 4 HOH A 116 516 50 HOH HOH . D 4 HOH A 117 517 166 HOH HOH . D 4 HOH A 118 518 119 HOH HOH . D 4 HOH A 119 519 292 HOH HOH . D 4 HOH A 120 520 12 HOH HOH . D 4 HOH A 121 521 244 HOH HOH . D 4 HOH A 122 522 17 HOH HOH . D 4 HOH A 123 523 290 HOH HOH . D 4 HOH A 124 524 60 HOH HOH . D 4 HOH A 125 525 15 HOH HOH . D 4 HOH A 126 526 18 HOH HOH . D 4 HOH A 127 527 44 HOH HOH . D 4 HOH A 128 528 62 HOH HOH . D 4 HOH A 129 529 77 HOH HOH . D 4 HOH A 130 530 156 HOH HOH . D 4 HOH A 131 531 102 HOH HOH . D 4 HOH A 132 532 110 HOH HOH . D 4 HOH A 133 533 3 HOH HOH . D 4 HOH A 134 534 123 HOH HOH . D 4 HOH A 135 535 96 HOH HOH . D 4 HOH A 136 536 51 HOH HOH . D 4 HOH A 137 537 5 HOH HOH . D 4 HOH A 138 538 87 HOH HOH . D 4 HOH A 139 539 33 HOH HOH . D 4 HOH A 140 540 27 HOH HOH . D 4 HOH A 141 541 219 HOH HOH . D 4 HOH A 142 542 173 HOH HOH . D 4 HOH A 143 543 253 HOH HOH . D 4 HOH A 144 544 121 HOH HOH . D 4 HOH A 145 545 80 HOH HOH . D 4 HOH A 146 546 207 HOH HOH . D 4 HOH A 147 547 131 HOH HOH . D 4 HOH A 148 548 153 HOH HOH . D 4 HOH A 149 549 135 HOH HOH . D 4 HOH A 150 550 194 HOH HOH . D 4 HOH A 151 551 64 HOH HOH . D 4 HOH A 152 552 57 HOH HOH . D 4 HOH A 153 553 200 HOH HOH . D 4 HOH A 154 554 32 HOH HOH . D 4 HOH A 155 555 81 HOH HOH . D 4 HOH A 156 556 261 HOH HOH . D 4 HOH A 157 557 215 HOH HOH . D 4 HOH A 158 558 148 HOH HOH . D 4 HOH A 159 559 186 HOH HOH . D 4 HOH A 160 560 136 HOH HOH . D 4 HOH A 161 561 97 HOH HOH . D 4 HOH A 162 562 146 HOH HOH . D 4 HOH A 163 563 73 HOH HOH . D 4 HOH A 164 564 59 HOH HOH . D 4 HOH A 165 565 63 HOH HOH . D 4 HOH A 166 566 124 HOH HOH . D 4 HOH A 167 567 187 HOH HOH . D 4 HOH A 168 568 125 HOH HOH . D 4 HOH A 169 569 237 HOH HOH . D 4 HOH A 170 570 291 HOH HOH . D 4 HOH A 171 571 8 HOH HOH . D 4 HOH A 172 572 269 HOH HOH . D 4 HOH A 173 573 127 HOH HOH . D 4 HOH A 174 574 298 HOH HOH . D 4 HOH A 175 575 66 HOH HOH . D 4 HOH A 176 576 162 HOH HOH . D 4 HOH A 177 577 294 HOH HOH . D 4 HOH A 178 578 192 HOH HOH . D 4 HOH A 179 579 69 HOH HOH . D 4 HOH A 180 580 113 HOH HOH . D 4 HOH A 181 581 178 HOH HOH . D 4 HOH A 182 582 202 HOH HOH . D 4 HOH A 183 583 49 HOH HOH . D 4 HOH A 184 584 132 HOH HOH . D 4 HOH A 185 585 90 HOH HOH . D 4 HOH A 186 586 58 HOH HOH . D 4 HOH A 187 587 231 HOH HOH . D 4 HOH A 188 588 84 HOH HOH . D 4 HOH A 189 589 252 HOH HOH . D 4 HOH A 190 590 126 HOH HOH . D 4 HOH A 191 591 89 HOH HOH . D 4 HOH A 192 592 174 HOH HOH . D 4 HOH A 193 593 46 HOH HOH . D 4 HOH A 194 594 297 HOH HOH . D 4 HOH A 195 595 223 HOH HOH . D 4 HOH A 196 596 28 HOH HOH . D 4 HOH A 197 597 171 HOH HOH . D 4 HOH A 198 598 129 HOH HOH . D 4 HOH A 199 599 71 HOH HOH . D 4 HOH A 200 600 29 HOH HOH . D 4 HOH A 201 601 85 HOH HOH . D 4 HOH A 202 602 1 HOH HOH . D 4 HOH A 203 603 176 HOH HOH . D 4 HOH A 204 604 235 HOH HOH . D 4 HOH A 205 605 68 HOH HOH . D 4 HOH A 206 606 101 HOH HOH . D 4 HOH A 207 607 184 HOH HOH . D 4 HOH A 208 608 257 HOH HOH . D 4 HOH A 209 609 211 HOH HOH . D 4 HOH A 210 610 151 HOH HOH . D 4 HOH A 211 611 234 HOH HOH . D 4 HOH A 212 612 181 HOH HOH . D 4 HOH A 213 613 21 HOH HOH . D 4 HOH A 214 614 134 HOH HOH . D 4 HOH A 215 615 40 HOH HOH . D 4 HOH A 216 616 67 HOH HOH . D 4 HOH A 217 617 120 HOH HOH . D 4 HOH A 218 618 159 HOH HOH . D 4 HOH A 219 619 233 HOH HOH . D 4 HOH A 220 620 149 HOH HOH . D 4 HOH A 221 621 272 HOH HOH . D 4 HOH A 222 622 287 HOH HOH . D 4 HOH A 223 623 226 HOH HOH . D 4 HOH A 224 624 258 HOH HOH . D 4 HOH A 225 625 111 HOH HOH . D 4 HOH A 226 626 100 HOH HOH . D 4 HOH A 227 627 289 HOH HOH . D 4 HOH A 228 628 278 HOH HOH . D 4 HOH A 229 629 275 HOH HOH . D 4 HOH A 230 630 266 HOH HOH . D 4 HOH A 231 631 204 HOH HOH . D 4 HOH A 232 632 155 HOH HOH . D 4 HOH A 233 633 185 HOH HOH . D 4 HOH A 234 634 267 HOH HOH . D 4 HOH A 235 635 239 HOH HOH . D 4 HOH A 236 636 182 HOH HOH . D 4 HOH A 237 637 203 HOH HOH . D 4 HOH A 238 638 152 HOH HOH . D 4 HOH A 239 639 26 HOH HOH . D 4 HOH A 240 640 55 HOH HOH . D 4 HOH A 241 641 177 HOH HOH . D 4 HOH A 242 642 254 HOH HOH . D 4 HOH A 243 643 228 HOH HOH . D 4 HOH A 244 644 279 HOH HOH . D 4 HOH A 245 645 114 HOH HOH . D 4 HOH A 246 646 167 HOH HOH . D 4 HOH A 247 647 76 HOH HOH . D 4 HOH A 248 648 183 HOH HOH . D 4 HOH A 249 649 230 HOH HOH . D 4 HOH A 250 650 175 HOH HOH . D 4 HOH A 251 651 147 HOH HOH . D 4 HOH A 252 652 24 HOH HOH . D 4 HOH A 253 653 281 HOH HOH . D 4 HOH A 254 654 248 HOH HOH . D 4 HOH A 255 655 145 HOH HOH . D 4 HOH A 256 656 218 HOH HOH . D 4 HOH A 257 657 133 HOH HOH . D 4 HOH A 258 658 143 HOH HOH . D 4 HOH A 259 659 246 HOH HOH . D 4 HOH A 260 660 260 HOH HOH . D 4 HOH A 261 661 213 HOH HOH . D 4 HOH A 262 662 256 HOH HOH . D 4 HOH A 263 663 280 HOH HOH . D 4 HOH A 264 664 243 HOH HOH . D 4 HOH A 265 665 274 HOH HOH . D 4 HOH A 266 666 78 HOH HOH . D 4 HOH A 267 667 249 HOH HOH . D 4 HOH A 268 668 268 HOH HOH . D 4 HOH A 269 669 241 HOH HOH . D 4 HOH A 270 670 172 HOH HOH . D 4 HOH A 271 671 180 HOH HOH . D 4 HOH A 272 672 23 HOH HOH . D 4 HOH A 273 673 271 HOH HOH . D 4 HOH A 274 674 283 HOH HOH . D 4 HOH A 275 675 157 HOH HOH . D 4 HOH A 276 676 188 HOH HOH . D 4 HOH A 277 677 285 HOH HOH . D 4 HOH A 278 678 229 HOH HOH . D 4 HOH A 279 679 116 HOH HOH . D 4 HOH A 280 680 284 HOH HOH . D 4 HOH A 281 681 154 HOH HOH . D 4 HOH A 282 682 206 HOH HOH . D 4 HOH A 283 683 250 HOH HOH . D 4 HOH A 284 684 276 HOH HOH . D 4 HOH A 285 685 277 HOH HOH . D 4 HOH A 286 686 247 HOH HOH . D 4 HOH A 287 687 220 HOH HOH . D 4 HOH A 288 688 209 HOH HOH . D 4 HOH A 289 689 264 HOH HOH . D 4 HOH A 290 690 251 HOH HOH . D 4 HOH A 291 691 265 HOH HOH . D 4 HOH A 292 692 288 HOH HOH . D 4 HOH A 293 693 128 HOH HOH . D 4 HOH A 294 694 191 HOH HOH . D 4 HOH A 295 695 217 HOH HOH . D 4 HOH A 296 696 198 HOH HOH . D 4 HOH A 297 697 273 HOH HOH . D 4 HOH A 298 698 270 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 23.943 _atom_site.Cartn_y -4.667 _atom_site.Cartn_z 27.721 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 17.59 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 233 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #