data_5DRS # _model_server_result.job_id v-NrC_r8xTScMJ1Tk_NkHg _model_server_result.datetime_utc '2024-11-16 07:57:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5drs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 5DRS # _exptl.entry_id 5DRS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 163.172 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BICINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment Zn _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.11 _cell.angle_gamma 90 _cell.entry_id 5DRS _cell.length_a 42.011 _cell.length_b 40.891 _cell.length_c 71.626 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DRS _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 94 A HIS 94 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc2 A NE2 HIS 96 A HIS 96 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc3 A ND1 HIS 119 A HIS 119 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc4 B ZN ZN . A ZN 301 1_555 F N4 5EF . A 5EF 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.897 ? # _chem_comp.formula 'C6 H13 N O4' _chem_comp.formula_weight 163.172 _chem_comp.id BCN _chem_comp.mon_nstd_flag . _chem_comp.name BICINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C1 BCN sing 118 n n N1 C3 BCN sing 119 n n N1 C5 BCN sing 120 n n C1 C2 BCN sing 121 n n C1 H11 BCN sing 122 n n C1 H12 BCN sing 123 n n C2 O21 BCN doub 124 n n C2 O22 BCN sing 125 n n O22 HO2 BCN sing 126 n n C3 C4 BCN sing 127 n n C3 H31 BCN sing 128 n n C3 H32 BCN sing 129 n n C4 O4 BCN sing 130 n n C4 H41 BCN sing 131 n n C4 H42 BCN sing 132 n n O4 HO4 BCN sing 133 n n C5 C6 BCN sing 134 n n C5 H51 BCN sing 135 n n C5 H52 BCN sing 136 n n C6 O6 BCN sing 137 n n C6 H61 BCN sing 138 n n C6 H62 BCN sing 139 n n O6 HO6 BCN sing 140 n n # _atom_sites.entry_id 5DRS _atom_sites.fract_transf_matrix[1][1] 0.023803 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005985 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024455 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014396 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 1 ZN ZN . C 3 BCN A 1 302 1 BCN BCN . D 4 DMS A 1 303 2 DMS DMS . E 5 MES A 1 304 3 MES MES . F 6 5EF A 1 305 1 5EF V13 . G 7 HOH A 1 401 189 HOH HOH . G 7 HOH A 2 402 138 HOH HOH . G 7 HOH A 3 403 65 HOH HOH . G 7 HOH A 4 404 90 HOH HOH . G 7 HOH A 5 405 142 HOH HOH . G 7 HOH A 6 406 135 HOH HOH . G 7 HOH A 7 407 183 HOH HOH . G 7 HOH A 8 408 172 HOH HOH . G 7 HOH A 9 409 155 HOH HOH . G 7 HOH A 10 410 195 HOH HOH . G 7 HOH A 11 411 218 HOH HOH . G 7 HOH A 12 412 47 HOH HOH . G 7 HOH A 13 413 208 HOH HOH . G 7 HOH A 14 414 126 HOH HOH . G 7 HOH A 15 415 203 HOH HOH . G 7 HOH A 16 416 91 HOH HOH . G 7 HOH A 17 417 176 HOH HOH . G 7 HOH A 18 418 190 HOH HOH . G 7 HOH A 19 419 41 HOH HOH . G 7 HOH A 20 420 122 HOH HOH . G 7 HOH A 21 421 192 HOH HOH . G 7 HOH A 22 422 206 HOH HOH . G 7 HOH A 23 423 26 HOH HOH . G 7 HOH A 24 424 5 HOH HOH . G 7 HOH A 25 425 127 HOH HOH . G 7 HOH A 26 426 165 HOH HOH . G 7 HOH A 27 427 241 HOH HOH . G 7 HOH A 28 428 55 HOH HOH . G 7 HOH A 29 429 243 HOH HOH . G 7 HOH A 30 430 13 HOH HOH . G 7 HOH A 31 431 235 HOH HOH . G 7 HOH A 32 432 24 HOH HOH . G 7 HOH A 33 433 121 HOH HOH . G 7 HOH A 34 434 233 HOH HOH . G 7 HOH A 35 435 130 HOH HOH . G 7 HOH A 36 436 202 HOH HOH . G 7 HOH A 37 437 43 HOH HOH . G 7 HOH A 38 438 64 HOH HOH . G 7 HOH A 39 439 96 HOH HOH . G 7 HOH A 40 440 117 HOH HOH . G 7 HOH A 41 441 18 HOH HOH . G 7 HOH A 42 442 75 HOH HOH . G 7 HOH A 43 443 44 HOH HOH . G 7 HOH A 44 444 82 HOH HOH . G 7 HOH A 45 445 108 HOH HOH . G 7 HOH A 46 446 248 HOH HOH . G 7 HOH A 47 447 181 HOH HOH . G 7 HOH A 48 448 29 HOH HOH . G 7 HOH A 49 449 156 HOH HOH . G 7 HOH A 50 450 56 HOH HOH . G 7 HOH A 51 451 128 HOH HOH . G 7 HOH A 52 452 100 HOH HOH . G 7 HOH A 53 453 66 HOH HOH . G 7 HOH A 54 454 226 HOH HOH . G 7 HOH A 55 455 141 HOH HOH . G 7 HOH A 56 456 222 HOH HOH . G 7 HOH A 57 457 242 HOH HOH . G 7 HOH A 58 458 53 HOH HOH . G 7 HOH A 59 459 169 HOH HOH . G 7 HOH A 60 460 7 HOH HOH . G 7 HOH A 61 461 199 HOH HOH . G 7 HOH A 62 462 214 HOH HOH . G 7 HOH A 63 463 209 HOH HOH . G 7 HOH A 64 464 152 HOH HOH . G 7 HOH A 65 465 70 HOH HOH . G 7 HOH A 66 466 164 HOH HOH . G 7 HOH A 67 467 149 HOH HOH . G 7 HOH A 68 468 17 HOH HOH . G 7 HOH A 69 469 99 HOH HOH . G 7 HOH A 70 470 3 HOH HOH . G 7 HOH A 71 471 170 HOH HOH . G 7 HOH A 72 472 22 HOH HOH . G 7 HOH A 73 473 131 HOH HOH . G 7 HOH A 74 474 80 HOH HOH . G 7 HOH A 75 475 185 HOH HOH . G 7 HOH A 76 476 42 HOH HOH . G 7 HOH A 77 477 36 HOH HOH . G 7 HOH A 78 478 84 HOH HOH . G 7 HOH A 79 479 19 HOH HOH . G 7 HOH A 80 480 50 HOH HOH . G 7 HOH A 81 481 116 HOH HOH . G 7 HOH A 82 482 68 HOH HOH . G 7 HOH A 83 483 30 HOH HOH . G 7 HOH A 84 484 72 HOH HOH . G 7 HOH A 85 485 9 HOH HOH . G 7 HOH A 86 486 27 HOH HOH . G 7 HOH A 87 487 193 HOH HOH . G 7 HOH A 88 488 1 HOH HOH . G 7 HOH A 89 489 79 HOH HOH . G 7 HOH A 90 490 61 HOH HOH . G 7 HOH A 91 491 33 HOH HOH . G 7 HOH A 92 492 105 HOH HOH . G 7 HOH A 93 493 12 HOH HOH . G 7 HOH A 94 494 37 HOH HOH . G 7 HOH A 95 495 74 HOH HOH . G 7 HOH A 96 496 110 HOH HOH . G 7 HOH A 97 497 247 HOH HOH . G 7 HOH A 98 498 14 HOH HOH . G 7 HOH A 99 499 2 HOH HOH . G 7 HOH A 100 500 23 HOH HOH . G 7 HOH A 101 501 63 HOH HOH . G 7 HOH A 102 502 167 HOH HOH . G 7 HOH A 103 503 207 HOH HOH . G 7 HOH A 104 504 234 HOH HOH . G 7 HOH A 105 505 28 HOH HOH . G 7 HOH A 106 506 8 HOH HOH . G 7 HOH A 107 507 182 HOH HOH . G 7 HOH A 108 508 71 HOH HOH . G 7 HOH A 109 509 109 HOH HOH . G 7 HOH A 110 510 49 HOH HOH . G 7 HOH A 111 511 139 HOH HOH . G 7 HOH A 112 512 86 HOH HOH . G 7 HOH A 113 513 124 HOH HOH . G 7 HOH A 114 514 144 HOH HOH . G 7 HOH A 115 515 215 HOH HOH . G 7 HOH A 116 516 15 HOH HOH . G 7 HOH A 117 517 58 HOH HOH . G 7 HOH A 118 518 225 HOH HOH . G 7 HOH A 119 519 154 HOH HOH . G 7 HOH A 120 520 200 HOH HOH . G 7 HOH A 121 521 57 HOH HOH . G 7 HOH A 122 522 220 HOH HOH . G 7 HOH A 123 523 21 HOH HOH . G 7 HOH A 124 524 106 HOH HOH . G 7 HOH A 125 525 120 HOH HOH . G 7 HOH A 126 526 210 HOH HOH . G 7 HOH A 127 527 20 HOH HOH . G 7 HOH A 128 528 211 HOH HOH . G 7 HOH A 129 529 73 HOH HOH . G 7 HOH A 130 530 25 HOH HOH . G 7 HOH A 131 531 107 HOH HOH . G 7 HOH A 132 532 236 HOH HOH . G 7 HOH A 133 533 245 HOH HOH . G 7 HOH A 134 534 216 HOH HOH . G 7 HOH A 135 535 6 HOH HOH . G 7 HOH A 136 536 129 HOH HOH . G 7 HOH A 137 537 67 HOH HOH . G 7 HOH A 138 538 35 HOH HOH . G 7 HOH A 139 539 31 HOH HOH . G 7 HOH A 140 540 112 HOH HOH . G 7 HOH A 141 541 173 HOH HOH . G 7 HOH A 142 542 11 HOH HOH . G 7 HOH A 143 543 62 HOH HOH . G 7 HOH A 144 544 162 HOH HOH . G 7 HOH A 145 545 115 HOH HOH . G 7 HOH A 146 546 48 HOH HOH . G 7 HOH A 147 547 32 HOH HOH . G 7 HOH A 148 548 34 HOH HOH . G 7 HOH A 149 549 113 HOH HOH . G 7 HOH A 150 550 111 HOH HOH . G 7 HOH A 151 551 158 HOH HOH . G 7 HOH A 152 552 93 HOH HOH . G 7 HOH A 153 553 45 HOH HOH . G 7 HOH A 154 554 97 HOH HOH . G 7 HOH A 155 555 143 HOH HOH . G 7 HOH A 156 556 166 HOH HOH . G 7 HOH A 157 557 16 HOH HOH . G 7 HOH A 158 558 94 HOH HOH . G 7 HOH A 159 559 237 HOH HOH . G 7 HOH A 160 560 133 HOH HOH . G 7 HOH A 161 561 125 HOH HOH . G 7 HOH A 162 562 224 HOH HOH . G 7 HOH A 163 563 238 HOH HOH . G 7 HOH A 164 564 46 HOH HOH . G 7 HOH A 165 565 10 HOH HOH . G 7 HOH A 166 566 171 HOH HOH . G 7 HOH A 167 567 69 HOH HOH . G 7 HOH A 168 568 81 HOH HOH . G 7 HOH A 169 569 4 HOH HOH . G 7 HOH A 170 570 54 HOH HOH . G 7 HOH A 171 571 40 HOH HOH . G 7 HOH A 172 572 221 HOH HOH . G 7 HOH A 173 573 184 HOH HOH . G 7 HOH A 174 574 134 HOH HOH . G 7 HOH A 175 575 95 HOH HOH . G 7 HOH A 176 576 114 HOH HOH . G 7 HOH A 177 577 89 HOH HOH . G 7 HOH A 178 578 180 HOH HOH . G 7 HOH A 179 579 212 HOH HOH . G 7 HOH A 180 580 85 HOH HOH . G 7 HOH A 181 581 240 HOH HOH . G 7 HOH A 182 582 244 HOH HOH . G 7 HOH A 183 583 145 HOH HOH . G 7 HOH A 184 584 196 HOH HOH . G 7 HOH A 185 585 59 HOH HOH . G 7 HOH A 186 586 194 HOH HOH . G 7 HOH A 187 587 147 HOH HOH . G 7 HOH A 188 588 146 HOH HOH . G 7 HOH A 189 589 137 HOH HOH . G 7 HOH A 190 590 151 HOH HOH . G 7 HOH A 191 591 205 HOH HOH . G 7 HOH A 192 592 123 HOH HOH . G 7 HOH A 193 593 239 HOH HOH . G 7 HOH A 194 594 78 HOH HOH . G 7 HOH A 195 595 52 HOH HOH . G 7 HOH A 196 596 98 HOH HOH . G 7 HOH A 197 597 217 HOH HOH . G 7 HOH A 198 598 232 HOH HOH . G 7 HOH A 199 599 140 HOH HOH . G 7 HOH A 200 600 101 HOH HOH . G 7 HOH A 201 601 160 HOH HOH . G 7 HOH A 202 602 187 HOH HOH . G 7 HOH A 203 603 77 HOH HOH . G 7 HOH A 204 604 148 HOH HOH . G 7 HOH A 205 605 204 HOH HOH . G 7 HOH A 206 606 38 HOH HOH . G 7 HOH A 207 607 76 HOH HOH . G 7 HOH A 208 608 229 HOH HOH . G 7 HOH A 209 609 178 HOH HOH . G 7 HOH A 210 610 102 HOH HOH . G 7 HOH A 211 611 231 HOH HOH . G 7 HOH A 212 612 177 HOH HOH . G 7 HOH A 213 613 153 HOH HOH . G 7 HOH A 214 614 198 HOH HOH . G 7 HOH A 215 615 60 HOH HOH . G 7 HOH A 216 616 168 HOH HOH . G 7 HOH A 217 617 87 HOH HOH . G 7 HOH A 218 618 213 HOH HOH . G 7 HOH A 219 619 249 HOH HOH . G 7 HOH A 220 620 223 HOH HOH . G 7 HOH A 221 621 230 HOH HOH . G 7 HOH A 222 622 150 HOH HOH . G 7 HOH A 223 623 132 HOH HOH . G 7 HOH A 224 624 163 HOH HOH . G 7 HOH A 225 625 88 HOH HOH . G 7 HOH A 226 626 92 HOH HOH . G 7 HOH A 227 627 227 HOH HOH . G 7 HOH A 228 628 161 HOH HOH . G 7 HOH A 229 629 219 HOH HOH . G 7 HOH A 230 630 228 HOH HOH . G 7 HOH A 231 631 83 HOH HOH . G 7 HOH A 232 632 250 HOH HOH . G 7 HOH A 233 633 175 HOH HOH . G 7 HOH A 234 634 197 HOH HOH . G 7 HOH A 235 635 104 HOH HOH . G 7 HOH A 236 636 186 HOH HOH . G 7 HOH A 237 637 201 HOH HOH . G 7 HOH A 238 638 51 HOH HOH . G 7 HOH A 239 639 159 HOH HOH . G 7 HOH A 240 640 157 HOH HOH . G 7 HOH A 241 641 119 HOH HOH . G 7 HOH A 242 642 179 HOH HOH . G 7 HOH A 243 643 136 HOH HOH . G 7 HOH A 244 644 246 HOH HOH . G 7 HOH A 245 645 191 HOH HOH . G 7 HOH A 246 646 188 HOH HOH . G 7 HOH A 247 647 174 HOH HOH . G 7 HOH A 248 648 39 HOH HOH . G 7 HOH A 249 649 118 HOH HOH . G 7 HOH A 250 650 103 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 BCN . . . C 3 0.385 -13.091 23.424 1 42.65 ? N1 BCN 302 A 1 HETATM 2 C C1 BCN . . . C 3 1.397 -12.612 24.4 1 46.34 ? C1 BCN 302 A 1 HETATM 3 C C2 BCN . . . C 3 1.059 -13.478 25.581 1 80.29 ? C2 BCN 302 A 1 HETATM 4 O O21 BCN . . . C 3 1.826 -14.434 25.835 1 97.2 ? O21 BCN 302 A 1 HETATM 5 O O22 BCN . . . C 3 0.004 -13.225 26.22 1 87.74 ? O22 BCN 302 A 1 HETATM 6 C C3 BCN . . . C 3 -0.543 -11.988 23.058 1 28.27 ? C3 BCN 302 A 1 HETATM 7 C C4 BCN . . . C 3 -1.825 -11.725 23.87 1 43.37 ? C4 BCN 302 A 1 HETATM 8 O O4 BCN . . . C 3 -1.697 -10.574 24.747 1 48.18 ? O4 BCN 302 A 1 HETATM 9 C C5 BCN . . . C 3 1.086 -13.724 22.275 1 23.39 ? C5 BCN 302 A 1 HETATM 10 C C6 BCN . . . C 3 0.181 -14.7 21.51 1 53.09 ? C6 BCN 302 A 1 HETATM 11 O O6 BCN . . . C 3 -0.245 -14.036 20.322 1 53.82 ? O6 BCN 302 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 11 #