data_5DS3 # _model_server_result.job_id WtzMBabx9yiZlTxxA1OKEg _model_server_result.datetime_utc '2024-11-27 07:07:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ds3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1101}' # _entry.id 5DS3 # _exptl.entry_id 5DS3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5DS3 _cell.length_a 93.405 _cell.length_b 93.405 _cell.length_c 134.197 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DS3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 104 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 845 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 104 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 845 _struct_conn.ptnr2_symmetry 7_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.059 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 60 n n OH2 HO2 1PE sing 61 n n C12 C22 1PE sing 62 n n C12 H121 1PE sing 63 n n C12 H122 1PE sing 64 n n C22 OH3 1PE sing 65 n n C22 H221 1PE sing 66 n n C22 H222 1PE sing 67 n n OH3 C23 1PE sing 68 n n C13 C23 1PE sing 69 n n C13 OH4 1PE sing 70 n n C13 H131 1PE sing 71 n n C13 H132 1PE sing 72 n n C23 H231 1PE sing 73 n n C23 H232 1PE sing 74 n n OH4 C24 1PE sing 75 n n C14 C24 1PE sing 76 n n C14 OH5 1PE sing 77 n n C14 H141 1PE sing 78 n n C14 H142 1PE sing 79 n n C24 H241 1PE sing 80 n n C24 H242 1PE sing 81 n n OH5 C25 1PE sing 82 n n C15 C25 1PE sing 83 n n C15 OH6 1PE sing 84 n n C15 H151 1PE sing 85 n n C15 H152 1PE sing 86 n n C25 H251 1PE sing 87 n n C25 H252 1PE sing 88 n n OH6 C26 1PE sing 89 n n C16 C26 1PE sing 90 n n C16 OH7 1PE sing 91 n n C16 H161 1PE sing 92 n n C16 H162 1PE sing 93 n n C26 H261 1PE sing 94 n n C26 H262 1PE sing 95 n n OH7 HO7 1PE sing 96 n n # _atom_sites.entry_id 5DS3 _atom_sites.fract_transf_matrix[1][1] 0.010706 _atom_sites.fract_transf_matrix[1][2] 0.006181 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012362 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007452 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1PE A 1 1101 1 1PE 1PE . C 3 09L A 1 1102 2001 09L 09L . D 4 SO4 A 1 1103 1 SO4 SO4 . E 4 SO4 A 1 1104 2 SO4 SO4 . F 5 HOH A 1 1201 17 HOH HOH . F 5 HOH A 2 1202 28 HOH HOH . F 5 HOH A 3 1203 26 HOH HOH . F 5 HOH A 4 1204 9 HOH HOH . F 5 HOH A 5 1205 18 HOH HOH . F 5 HOH A 6 1206 3 HOH HOH . F 5 HOH A 7 1207 29 HOH HOH . F 5 HOH A 8 1208 4 HOH HOH . F 5 HOH A 9 1209 20 HOH HOH . F 5 HOH A 10 1210 27 HOH HOH . F 5 HOH A 11 1211 15 HOH HOH . F 5 HOH A 12 1212 21 HOH HOH . F 5 HOH A 13 1213 6 HOH HOH . F 5 HOH A 14 1214 7 HOH HOH . F 5 HOH A 15 1215 8 HOH HOH . F 5 HOH A 16 1216 10 HOH HOH . F 5 HOH A 17 1217 12 HOH HOH . F 5 HOH A 18 1218 11 HOH HOH . F 5 HOH A 19 1219 23 HOH HOH . F 5 HOH A 20 1220 14 HOH HOH . F 5 HOH A 21 1221 5 HOH HOH . F 5 HOH A 22 1222 13 HOH HOH . F 5 HOH A 23 1223 25 HOH HOH . F 5 HOH A 24 1224 24 HOH HOH . F 5 HOH A 25 1225 22 HOH HOH . F 5 HOH A 26 1226 16 HOH HOH . F 5 HOH A 27 1227 19 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH2 1PE . . . B 2 -4.72 49.941 16.657 1 71.02 ? OH2 1PE 1101 A 1 HETATM 2 C C12 1PE . . . B 2 -3.46 50.399 16.184 1 68.56 ? C12 1PE 1101 A 1 HETATM 3 C C22 1PE . . . B 2 -2.91 49.511 15.123 1 66.33 ? C22 1PE 1101 A 1 HETATM 4 O OH3 1PE . . . B 2 -3.977 48.976 14.353 1 68.14 ? OH3 1PE 1101 A 1 HETATM 5 C C13 1PE . . . B 2 -4.99 47.181 13.165 1 71.46 ? C13 1PE 1101 A 1 HETATM 6 C C23 1PE . . . B 2 -3.727 47.686 13.797 1 68.17 ? C23 1PE 1101 A 1 HETATM 7 O OH4 1PE . . . B 2 -4.872 47.114 11.745 1 72.66 ? OH4 1PE 1101 A 1 HETATM 8 C C14 1PE . . . B 2 -5.923 45.081 11.018 1 75.91 ? C14 1PE 1101 A 1 HETATM 9 C C24 1PE . . . B 2 -4.634 45.798 11.259 1 73.36 ? C24 1PE 1101 A 1 HETATM 10 O OH5 1PE . . . B 2 -6.262 45.135 9.635 1 80.16 ? OH5 1PE 1101 A 1 HETATM 11 C C15 1PE . . . B 2 -7.967 45.007 7.935 1 84.7 ? C15 1PE 1101 A 1 HETATM 12 C C25 1PE . . . B 2 -7.569 44.643 9.335 1 82.46 ? C25 1PE 1101 A 1 HETATM 13 O OH6 1PE . . . B 2 -7.017 44.501 6.998 1 84.83 ? OH6 1PE 1101 A 1 HETATM 14 C C16 1PE . . . B 2 -6.326 44.243 4.711 1 82.76 ? C16 1PE 1101 A 1 HETATM 15 C C26 1PE . . . B 2 -7.481 44.473 5.648 1 85.3 ? C26 1PE 1101 A 1 HETATM 16 O OH7 1PE . . . B 2 -6.055 42.862 4.534 1 78.93 ? OH7 1PE 1101 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 35 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 450 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 16 #