data_5DSG
#
_model_server_result.job_id            NcZB2vwKMpsx7YQ9QjuMoA 
_model_server_result.datetime_utc      '2024-10-19 16:47:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5dsg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":1201}' 
#
_entry.id    5DSG 
#
_exptl.entry_id    5DSG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              392.512 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            (1R,2R,4S,5S,7S)-7-{[hydroxy(dithiophen-2-yl)acetyl]oxy}-9,9-dimethyl-3-oxa-9-azoniatricyclo[3.3.1.0~2,4~]nonane 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.37 
_cell.angle_gamma         90 
_cell.entry_id            5DSG 
_cell.length_a            48.49 
_cell.length_b            172.04 
_cell.length_c            60.66 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5DSG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,S 1 1 
B,L,M,N,O,P,Q,R,T 2 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 86 A CYS 105 1_555 A SG CYS 166 A CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 A SG CYS 361 A CYS 426 1_555 A SG CYS 364 A CYS 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 B SG CYS 86 B CYS 105 1_555 B SG CYS 166 B CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 B SG CYS 361 B CYS 426 1_555 B SG CYS 364 B CYS 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
#
_chem_comp.formula           'C19 H22 N O4 S2 1' 
_chem_comp.formula_weight    392.512 
_chem_comp.id                0HK 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (1R,2R,4S,5S,7S)-7-{[hydroxy(dithiophen-2-yl)acetyl]oxy}-9,9-dimethyl-3-oxa-9-azoniatricyclo[3.3.1.0~2,4~]nonane 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Tiotropium 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S44 C43 0HK sing 1 n y 
S44 C32 0HK sing 2 n y 
C43 C42 0HK doub 3 n y 
C6 C7 0HK sing 4 n n 
C6 C5 0HK sing 5 n n 
O29 C28 0HK doub 6 n n 
C7 C8 0HK sing 7 n n 
C7 N2 0HK sing 8 n n 
C42 C41 0HK sing 9 n y 
C32 C41 0HK doub 10 n y 
C32 C30 0HK sing 11 n n 
O33 C30 0HK sing 12 n n 
C8 O10 0HK sing 13 n n 
C8 C9 0HK sing 14 n n 
C28 C30 0HK sing 15 n n 
C28 O11 0HK sing 16 n n 
C30 C31 0HK sing 17 n n 
C12 N2 0HK sing 18 n n 
C1 N2 0HK sing 19 n n 
N2 C3 0HK sing 20 n n 
O10 C9 0HK sing 21 n n 
C5 O11 0HK sing 22 n n 
C5 C4 0HK sing 23 n n 
C9 C3 0HK sing 24 n n 
C3 C4 0HK sing 25 n n 
C31 S37 0HK sing 26 n y 
C31 C34 0HK doub 27 n y 
S37 C36 0HK sing 28 n y 
C34 C35 0HK sing 29 n y 
C35 C36 0HK doub 30 n y 
C34 H1 0HK sing 31 n n 
C35 H2 0HK sing 32 n n 
C36 H3 0HK sing 33 n n 
C41 H4 0HK sing 34 n n 
C42 H5 0HK sing 35 n n 
C43 H6 0HK sing 36 n n 
O33 H7 0HK sing 37 n n 
C1 H8 0HK sing 38 n n 
C1 H9 0HK sing 39 n n 
C1 H10 0HK sing 40 n n 
C3 H11 0HK sing 41 n n 
C4 H12 0HK sing 42 n n 
C4 H13 0HK sing 43 n n 
C5 H14 0HK sing 44 n n 
C6 H15 0HK sing 45 n n 
C6 H16 0HK sing 46 n n 
C7 H17 0HK sing 47 n n 
C8 H18 0HK sing 48 n n 
C9 H19 0HK sing 49 n n 
C12 H20 0HK sing 50 n n 
C12 H21 0HK sing 51 n n 
C12 H22 0HK sing 52 n n 
#
_atom_sites.entry_id                     5DSG 
_atom_sites.fract_transf_matrix[1][1]    0.020623 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001576 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005813 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016533 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 0HK A 1 1201 1119 0HK 0HK . 
D 3 OLA A 1 1202 1120 OLA OLA . 
E 3 OLA A 1 1203 1121 OLA OLA . 
F 4 EDT A 1 1204 1122 EDT EDT . 
G 5 P6G A 1 1205 1124 P6G P6G . 
H 6 OLC A 1 1206 1125 OLC OLC . 
I 6 OLC A 1 1207 1126 OLC OLC . 
J 6 OLC A 1 1208 1127 OLC OLC . 
K 3 OLA A 1 1209 1124 OLA OLA . 
L 2 0HK B 1 1201 1119 0HK 0HK . 
M 6 OLC B 1 1202 1120 OLC OLC . 
N 3 OLA B 1 1203 1121 OLA OLA . 
O 3 OLA B 1 1204 1122 OLA OLA . 
P 5 P6G B 1 1205 1123 P6G P6G . 
Q 6 OLC B 1 1206 1125 OLC OLC . 
R 7 PG6 B 1 1207 1126 PG6 PGE . 
S 8 HOH A 1 1301 1133 HOH HOH . 
S 8 HOH A 2 1302 1138 HOH HOH . 
S 8 HOH A 3 1303 1140 HOH HOH . 
S 8 HOH A 4 1304 1137 HOH HOH . 
S 8 HOH A 5 1305 1135 HOH HOH . 
S 8 HOH A 6 1306 1131 HOH HOH . 
S 8 HOH A 7 1307 1139 HOH HOH . 
S 8 HOH A 8 1308 1132 HOH HOH . 
S 8 HOH A 9 1309 1129 HOH HOH . 
S 8 HOH A 10 1310 1128 HOH HOH . 
S 8 HOH A 11 1311 1144 HOH HOH . 
S 8 HOH A 12 1312 1136 HOH HOH . 
S 8 HOH A 13 1313 1141 HOH HOH . 
S 8 HOH A 14 1314 1134 HOH HOH . 
S 8 HOH A 15 1315 1130 HOH HOH . 
S 8 HOH A 16 1316 1143 HOH HOH . 
S 8 HOH A 17 1317 1142 HOH HOH . 
T 8 HOH B 1 1301 1135 HOH HOH . 
T 8 HOH B 2 1302 1134 HOH HOH . 
T 8 HOH B 3 1303 1130 HOH HOH . 
T 8 HOH B 4 1304 1138 HOH HOH . 
T 8 HOH B 5 1305 1136 HOH HOH . 
T 8 HOH B 6 1306 1128 HOH HOH . 
T 8 HOH B 7 1307 1133 HOH HOH . 
T 8 HOH B 8 1308 1127 HOH HOH . 
T 8 HOH B 9 1309 1132 HOH HOH . 
T 8 HOH B 10 1310 1129 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C28 0HK . . . L 2 61.685 0.678 92.454 1 47.4 ? C28 0HK 1201 B 1 
HETATM 2 O O29 0HK . . . L 2 62.546 1.114 91.698 1 48.8 ? O29 0HK 1201 B 1 
HETATM 3 C C31 0HK . . . L 2 59.765 -0.717 91.889 1 51.03 ? C31 0HK 1201 B 1 
HETATM 4 C C32 0HK . . . L 2 59.433 1.322 93.202 1 50.56 ? C32 0HK 1201 B 1 
HETATM 5 C C34 0HK . . . L 2 60.526 -1.864 91.837 1 52.65 ? C34 0HK 1201 B 1 
HETATM 6 C C35 0HK . . . L 2 59.907 -3.063 91.652 1 53.82 ? C35 0HK 1201 B 1 
HETATM 7 C C36 0HK . . . L 2 58.542 -3.087 91.523 1 54.16 ? C36 0HK 1201 B 1 
HETATM 8 C C41 0HK . . . L 2 58.903 0.682 94.294 1 51.17 ? C41 0HK 1201 B 1 
HETATM 9 C C42 0HK . . . L 2 58.211 1.39 95.217 1 52.83 ? C42 0HK 1201 B 1 
HETATM 10 C C43 0HK . . . L 2 58.051 2.741 95.038 1 53.1 ? C43 0HK 1201 B 1 
HETATM 11 O O10 0HK . . . L 2 61.214 0.449 97.587 1 40.42 ? O10 0HK 1201 B 1 
HETATM 12 O O11 0HK . . . L 2 62.013 0.139 93.712 1 46.81 ? O11 0HK 1201 B 1 
HETATM 13 O O33 0HK . . . L 2 60.118 1.416 90.913 1 47.35 ? O33 0HK 1201 B 1 
HETATM 14 S S37 0HK . . . L 2 58.12 -1.352 91.668 1 56.13 ? S37 0HK 1201 B 1 
HETATM 15 S S44 0HK . . . L 2 58.927 3.007 93.489 1 67.82 ? S44 0HK 1201 B 1 
HETATM 16 C C1 0HK . . . L 2 65.392 0.035 96.868 1 40.06 ? C1 0HK 1201 B 1 
HETATM 17 C C3 0HK . . . L 2 63.214 -0.829 96.528 1 41.76 ? C3 0HK 1201 B 1 
HETATM 18 C C4 0HK . . . L 2 63.484 -1.107 95.078 1 43.12 ? C4 0HK 1201 B 1 
HETATM 19 C C5 0HK . . . L 2 63.33 0.13 94.221 1 45.38 ? C5 0HK 1201 B 1 
HETATM 20 C C6 0HK . . . L 2 63.633 1.424 94.958 1 44.15 ? C6 0HK 1201 B 1 
HETATM 21 C C7 0HK . . . L 2 63.374 1.291 96.437 1 42.11 ? C7 0HK 1201 B 1 
HETATM 22 C C8 0HK . . . L 2 61.858 1.087 96.487 1 40.96 ? C8 0HK 1201 B 1 
HETATM 23 C C9 0HK . . . L 2 61.753 -0.38 96.556 1 41.59 ? C9 0HK 1201 B 1 
HETATM 24 C C12 0HK . . . L 2 63.948 0.273 98.542 1 42.44 ? C12 0HK 1201 B 1 
HETATM 25 C C30 0HK . . . L 2 60.228 0.7 92.08 1 48.98 ? C30 0HK 1201 B 1 
HETATM 26 N N2 0HK . . . L 2 63.992 0.196 97.086 1 41.61 1 N2 0HK 1201 B 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           341 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           26 
#