data_5DSG # _model_server_result.job_id A8R1HWGeYIkYRTDUXCy_Uw _model_server_result.datetime_utc '2025-02-26 14:59:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dsg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1204}' # _entry.id 5DSG # _exptl.entry_id 5DSG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.243 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '{[-(BIS-CARBOXYMETHYL-AMINO)-ETHYL]-CARBOXYMETHYL-AMINO}-ACETIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.37 _cell.angle_gamma 90 _cell.entry_id 5DSG _cell.length_a 48.49 _cell.length_b 172.04 _cell.length_c 60.66 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DSG _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,S 1 1 B,L,M,N,O,P,Q,R,T 2 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 86 A CYS 105 1_555 A SG CYS 166 A CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 361 A CYS 426 1_555 A SG CYS 364 A CYS 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 B SG CYS 86 B CYS 105 1_555 B SG CYS 166 B CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 B SG CYS 361 B CYS 426 1_555 B SG CYS 364 B CYS 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? # _chem_comp.formula 'C10 H16 N2 O8' _chem_comp.formula_weight 292.243 _chem_comp.id EDT _chem_comp.mon_nstd_flag . _chem_comp.name '{[-(BIS-CARBOXYMETHYL-AMINO)-ETHYL]-CARBOXYMETHYL-AMINO}-ACETIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O20 C5 EDT sing 135 n n O20 H20 EDT sing 136 n n C5 O19 EDT doub 137 n n C5 C4 EDT sing 138 n n C4 N3 EDT sing 139 n n C4 H041 EDT sing 140 n n C4 H042 EDT sing 141 n n N3 C2 EDT sing 142 n n N3 C6 EDT sing 143 n n C2 C1 EDT sing 144 n n C2 H021 EDT sing 145 n n C2 H022 EDT sing 146 n n C1 O18 EDT doub 147 n n C1 O17 EDT sing 148 n n O17 H17 EDT sing 149 n n C6 C7 EDT sing 150 n n C6 H061 EDT sing 151 n n C6 H062 EDT sing 152 n n C7 N8 EDT sing 153 n n C7 H071 EDT sing 154 n n C7 H072 EDT sing 155 n n N8 C9 EDT sing 156 n n N8 C11 EDT sing 157 n n C9 C10 EDT sing 158 n n C9 H091 EDT sing 159 n n C9 H092 EDT sing 160 n n C10 O16 EDT sing 161 n n C10 O15 EDT doub 162 n n O16 H16 EDT sing 163 n n C11 C12 EDT sing 164 n n C11 H111 EDT sing 165 n n C11 H112 EDT sing 166 n n C12 O13 EDT doub 167 n n C12 O14 EDT sing 168 n n O14 H14 EDT sing 169 n n # _atom_sites.entry_id 5DSG _atom_sites.fract_transf_matrix[1][1] 0.020623 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001576 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005813 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016533 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 0HK A 1 1201 1119 0HK 0HK . D 3 OLA A 1 1202 1120 OLA OLA . E 3 OLA A 1 1203 1121 OLA OLA . F 4 EDT A 1 1204 1122 EDT EDT . G 5 P6G A 1 1205 1124 P6G P6G . H 6 OLC A 1 1206 1125 OLC OLC . I 6 OLC A 1 1207 1126 OLC OLC . J 6 OLC A 1 1208 1127 OLC OLC . K 3 OLA A 1 1209 1124 OLA OLA . L 2 0HK B 1 1201 1119 0HK 0HK . M 6 OLC B 1 1202 1120 OLC OLC . N 3 OLA B 1 1203 1121 OLA OLA . O 3 OLA B 1 1204 1122 OLA OLA . P 5 P6G B 1 1205 1123 P6G P6G . Q 6 OLC B 1 1206 1125 OLC OLC . R 7 PG6 B 1 1207 1126 PG6 PGE . S 8 HOH A 1 1301 1133 HOH HOH . S 8 HOH A 2 1302 1138 HOH HOH . S 8 HOH A 3 1303 1140 HOH HOH . S 8 HOH A 4 1304 1137 HOH HOH . S 8 HOH A 5 1305 1135 HOH HOH . S 8 HOH A 6 1306 1131 HOH HOH . S 8 HOH A 7 1307 1139 HOH HOH . S 8 HOH A 8 1308 1132 HOH HOH . S 8 HOH A 9 1309 1129 HOH HOH . S 8 HOH A 10 1310 1128 HOH HOH . S 8 HOH A 11 1311 1144 HOH HOH . S 8 HOH A 12 1312 1136 HOH HOH . S 8 HOH A 13 1313 1141 HOH HOH . S 8 HOH A 14 1314 1134 HOH HOH . S 8 HOH A 15 1315 1130 HOH HOH . S 8 HOH A 16 1316 1143 HOH HOH . S 8 HOH A 17 1317 1142 HOH HOH . T 8 HOH B 1 1301 1135 HOH HOH . T 8 HOH B 2 1302 1134 HOH HOH . T 8 HOH B 3 1303 1130 HOH HOH . T 8 HOH B 4 1304 1138 HOH HOH . T 8 HOH B 5 1305 1136 HOH HOH . T 8 HOH B 6 1306 1128 HOH HOH . T 8 HOH B 7 1307 1133 HOH HOH . T 8 HOH B 8 1308 1127 HOH HOH . T 8 HOH B 9 1309 1132 HOH HOH . T 8 HOH B 10 1310 1129 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O20 EDT . . . F 4 18.585 32.445 73.516 1 72.59 ? O20 EDT 1204 A 1 HETATM 2 C C5 EDT . . . F 4 17.455 31.911 73.5 1 72.92 ? C5 EDT 1204 A 1 HETATM 3 O O19 EDT . . . F 4 16.632 32.089 72.577 1 74.28 ? O19 EDT 1204 A 1 HETATM 4 C C4 EDT . . . F 4 17.062 31.012 74.648 1 72.87 ? C4 EDT 1204 A 1 HETATM 5 N N3 EDT . . . F 4 16.089 31.701 75.508 1 72.54 ? N3 EDT 1204 A 1 HETATM 6 C C2 EDT . . . F 4 16.792 32.651 76.388 1 73.03 ? C2 EDT 1204 A 1 HETATM 7 C C1 EDT . . . F 4 16 33.927 76.536 1 72.42 ? C1 EDT 1204 A 1 HETATM 8 O O18 EDT . . . F 4 15.581 34.494 75.504 1 74.1 ? O18 EDT 1204 A 1 HETATM 9 O O17 EDT . . . F 4 15.805 34.374 77.687 1 70.27 ? O17 EDT 1204 A 1 HETATM 10 C C6 EDT . . . F 4 15.3 30.719 76.278 1 72.68 ? C6 EDT 1204 A 1 HETATM 11 C C7 EDT . . . F 4 15.835 30.458 77.685 1 74.28 ? C7 EDT 1204 A 1 HETATM 12 N N8 EDT . . . F 4 17.069 29.659 77.688 1 76.81 ? N8 EDT 1204 A 1 HETATM 13 C C9 EDT . . . F 4 17.441 29.388 79.084 1 77.93 ? C9 EDT 1204 A 1 HETATM 14 C C10 EDT . . . F 4 17.93 30.653 79.749 1 78.98 ? C10 EDT 1204 A 1 HETATM 15 O O16 EDT . . . F 4 17.228 31.165 80.648 1 78.43 ? O16 EDT 1204 A 1 HETATM 16 O O15 EDT . . . F 4 19.017 31.144 79.378 1 80.64 ? O15 EDT 1204 A 1 HETATM 17 C C11 EDT . . . F 4 16.847 28.381 76.997 1 78.61 ? C11 EDT 1204 A 1 HETATM 18 C C12 EDT . . . F 4 18.155 27.886 76.425 1 79.7 ? C12 EDT 1204 A 1 HETATM 19 O O13 EDT . . . F 4 18.387 28.084 75.212 1 80.4 ? O13 EDT 1204 A 1 HETATM 20 O O14 EDT . . . F 4 18.962 27.303 77.181 1 80.22 ? O14 EDT 1204 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 20 #