data_5DSG
#
_model_server_result.job_id            '_RPADZs_BFUInpOJVO1iUA' 
_model_server_result.datetime_utc      '2024-10-19 16:40:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5dsg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":1207}' 
#
_entry.id    5DSG 
#
_exptl.entry_id    5DSG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.37 
_cell.angle_gamma         90 
_cell.entry_id            5DSG 
_cell.length_a            48.49 
_cell.length_b            172.04 
_cell.length_c            60.66 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5DSG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,S 1 1 
B,L,M,N,O,P,Q,R,T 2 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 H N N 
? 6 I N N 
? 6 J N N 
? 6 M N N 
? 6 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 86 A CYS 105 1_555 A SG CYS 166 A CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 A SG CYS 361 A CYS 426 1_555 A SG CYS 364 A CYS 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 B SG CYS 86 B CYS 105 1_555 B SG CYS 166 B CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 B SG CYS 361 B CYS 426 1_555 B SG CYS 364 B CYS 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                OLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Oleoyl-R-glycerol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 C17 OLC sing 377 n n 
C10 C9 OLC doub 378 n n 
C10 C11 OLC sing 379 n n 
C9 C8 OLC sing 380 n n 
C17 C16 OLC sing 381 z n 
C11 C12 OLC sing 382 n n 
C8 C7 OLC sing 383 n n 
C24 C22 OLC sing 384 n n 
C24 O25 OLC sing 385 n n 
C16 C15 OLC sing 386 n n 
C12 C13 OLC sing 387 n n 
C7 C6 OLC sing 388 n n 
C15 C14 OLC sing 389 n n 
C13 C14 OLC sing 390 n n 
C6 C5 OLC sing 391 n n 
C5 C4 OLC sing 392 n n 
C4 C3 OLC sing 393 n n 
C3 C2 OLC sing 394 n n 
C2 C1 OLC sing 395 n n 
C21 C22 OLC sing 396 n n 
C21 O20 OLC sing 397 n n 
C1 O19 OLC doub 398 n n 
C1 O20 OLC sing 399 n n 
C22 O23 OLC sing 400 n n 
C18 H18 OLC sing 401 n n 
C18 H18A OLC sing 402 n n 
C18 H18B OLC sing 403 n n 
C10 H10 OLC sing 404 n n 
C9 H9 OLC sing 405 n n 
C17 H17 OLC sing 406 n n 
C17 H17A OLC sing 407 n n 
C11 H11 OLC sing 408 n n 
C11 H11A OLC sing 409 n n 
C8 H8 OLC sing 410 n n 
C8 H8A OLC sing 411 n n 
C24 H24 OLC sing 412 n n 
C24 H24A OLC sing 413 n n 
C16 H16 OLC sing 414 n n 
C16 H16A OLC sing 415 n n 
C12 H12 OLC sing 416 n n 
C12 H12A OLC sing 417 n n 
C7 H7 OLC sing 418 n n 
C7 H7A OLC sing 419 n n 
C15 H15 OLC sing 420 n n 
C15 H15A OLC sing 421 n n 
C13 H13 OLC sing 422 n n 
C13 H13A OLC sing 423 n n 
C6 H6 OLC sing 424 n n 
C6 H6A OLC sing 425 n n 
C14 H14 OLC sing 426 n n 
C14 H14A OLC sing 427 n n 
C5 H5 OLC sing 428 n n 
C5 H5A OLC sing 429 n n 
C4 H4 OLC sing 430 n n 
C4 H4A OLC sing 431 n n 
C3 H3 OLC sing 432 n n 
C3 H3A OLC sing 433 n n 
C2 H2 OLC sing 434 n n 
C2 H2A OLC sing 435 n n 
C21 H21 OLC sing 436 n n 
C21 H21A OLC sing 437 n n 
C22 H22 OLC sing 438 n n 
O25 HO25 OLC sing 439 n n 
O23 HO23 OLC sing 440 n n 
#
_atom_sites.entry_id                     5DSG 
_atom_sites.fract_transf_matrix[1][1]    0.020623 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001576 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005813 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016533 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 0HK A 1 1201 1119 0HK 0HK . 
D 3 OLA A 1 1202 1120 OLA OLA . 
E 3 OLA A 1 1203 1121 OLA OLA . 
F 4 EDT A 1 1204 1122 EDT EDT . 
G 5 P6G A 1 1205 1124 P6G P6G . 
H 6 OLC A 1 1206 1125 OLC OLC . 
I 6 OLC A 1 1207 1126 OLC OLC . 
J 6 OLC A 1 1208 1127 OLC OLC . 
K 3 OLA A 1 1209 1124 OLA OLA . 
L 2 0HK B 1 1201 1119 0HK 0HK . 
M 6 OLC B 1 1202 1120 OLC OLC . 
N 3 OLA B 1 1203 1121 OLA OLA . 
O 3 OLA B 1 1204 1122 OLA OLA . 
P 5 P6G B 1 1205 1123 P6G P6G . 
Q 6 OLC B 1 1206 1125 OLC OLC . 
R 7 PG6 B 1 1207 1126 PG6 PGE . 
S 8 HOH A 1 1301 1133 HOH HOH . 
S 8 HOH A 2 1302 1138 HOH HOH . 
S 8 HOH A 3 1303 1140 HOH HOH . 
S 8 HOH A 4 1304 1137 HOH HOH . 
S 8 HOH A 5 1305 1135 HOH HOH . 
S 8 HOH A 6 1306 1131 HOH HOH . 
S 8 HOH A 7 1307 1139 HOH HOH . 
S 8 HOH A 8 1308 1132 HOH HOH . 
S 8 HOH A 9 1309 1129 HOH HOH . 
S 8 HOH A 10 1310 1128 HOH HOH . 
S 8 HOH A 11 1311 1144 HOH HOH . 
S 8 HOH A 12 1312 1136 HOH HOH . 
S 8 HOH A 13 1313 1141 HOH HOH . 
S 8 HOH A 14 1314 1134 HOH HOH . 
S 8 HOH A 15 1315 1130 HOH HOH . 
S 8 HOH A 16 1316 1143 HOH HOH . 
S 8 HOH A 17 1317 1142 HOH HOH . 
T 8 HOH B 1 1301 1135 HOH HOH . 
T 8 HOH B 2 1302 1134 HOH HOH . 
T 8 HOH B 3 1303 1130 HOH HOH . 
T 8 HOH B 4 1304 1138 HOH HOH . 
T 8 HOH B 5 1305 1136 HOH HOH . 
T 8 HOH B 6 1306 1128 HOH HOH . 
T 8 HOH B 7 1307 1133 HOH HOH . 
T 8 HOH B 8 1308 1127 HOH HOH . 
T 8 HOH B 9 1309 1132 HOH HOH . 
T 8 HOH B 10 1310 1129 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 OLC . . . I 6 64.411 -3.326 55.277 1 75.02 ? C10 OLC 1207 A 1 
HETATM 2 C C9 OLC . . . I 6 64.801 -4.52 54.839 1 74.67 ? C9 OLC 1207 A 1 
HETATM 3 C C11 OLC . . . I 6 64.166 -2.208 54.292 1 74.82 ? C11 OLC 1207 A 1 
HETATM 4 C C8 OLC . . . I 6 65.051 -5.644 55.816 1 73.7 ? C8 OLC 1207 A 1 
HETATM 5 C C24 OLC . . . I 6 66.891 -17.868 55.037 1 94.51 ? C24 OLC 1207 A 1 
HETATM 6 C C7 OLC . . . I 6 64.394 -6.919 55.299 1 73.88 ? C7 OLC 1207 A 1 
HETATM 7 C C6 OLC . . . I 6 64.944 -8.146 56.018 1 74.74 ? C6 OLC 1207 A 1 
HETATM 8 C C5 OLC . . . I 6 64.377 -9.423 55.412 1 75.41 ? C5 OLC 1207 A 1 
HETATM 9 C C4 OLC . . . I 6 65.13 -10.654 55.902 1 77.01 ? C4 OLC 1207 A 1 
HETATM 10 C C3 OLC . . . I 6 64.626 -11.898 55.182 1 79.37 ? C3 OLC 1207 A 1 
HETATM 11 C C2 OLC . . . I 6 65.499 -13.114 55.469 1 82.59 ? C2 OLC 1207 A 1 
HETATM 12 C C21 OLC . . . I 6 64.819 -16.702 54.286 1 90.92 ? C21 OLC 1207 A 1 
HETATM 13 C C1 OLC . . . I 6 65.052 -14.242 54.57 1 86.53 ? C1 OLC 1207 A 1 
HETATM 14 C C22 OLC . . . I 6 65.738 -17.892 54.04 1 92.88 ? C22 OLC 1207 A 1 
HETATM 15 O O19 OLC . . . I 6 64.232 -14.041 53.689 1 87.11 ? O19 OLC 1207 A 1 
HETATM 16 O O25 OLC . . . I 6 67.62 -16.644 54.894 1 95.76 ? O25 OLC 1207 A 1 
HETATM 17 O O23 OLC . . . I 6 64.993 -19.106 54.197 1 92.53 ? O23 OLC 1207 A 1 
HETATM 18 O O20 OLC . . . I 6 65.579 -15.585 54.746 1 89.03 ? O20 OLC 1207 A 1 
#
_model_server_stats.io_time_ms              112 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           342 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           18 
#