data_5DSG
#
_model_server_result.job_id            3UUsA41F9f0mWDyS30E4XQ 
_model_server_result.datetime_utc      '2025-02-26 14:01:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5dsg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":1207}' 
#
_entry.id    5DSG 
#
_exptl.entry_id    5DSG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              266.331 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.37 
_cell.angle_gamma         90 
_cell.entry_id            5DSG 
_cell.length_a            48.49 
_cell.length_b            172.04 
_cell.length_c            60.66 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5DSG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,S 1 1 
B,L,M,N,O,P,Q,R,T 2 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      7 
_struct_asym.id                             R 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 86 A CYS 105 1_555 A SG CYS 166 A CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 A SG CYS 361 A CYS 426 1_555 A SG CYS 364 A CYS 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 B SG CYS 86 B CYS 105 1_555 B SG CYS 166 B CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 B SG CYS 361 B CYS 426 1_555 B SG CYS 364 B CYS 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
#
_chem_comp.formula           'C12 H26 O6' 
_chem_comp.formula_weight    266.331 
_chem_comp.id                PG6 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PG6 sing 485 n n 
C1 H11 PG6 sing 486 n n 
C1 H12 PG6 sing 487 n n 
C1 H13 PG6 sing 488 n n 
O1 C2 PG6 sing 489 n n 
C2 C3 PG6 sing 490 n n 
C2 H21 PG6 sing 491 n n 
C2 H22 PG6 sing 492 n n 
C3 O2 PG6 sing 493 n n 
C3 H31 PG6 sing 494 n n 
C3 H32 PG6 sing 495 n n 
O2 C4 PG6 sing 496 n n 
C4 C5 PG6 sing 497 n n 
C4 H41 PG6 sing 498 n n 
C4 H42 PG6 sing 499 n n 
C5 O3 PG6 sing 500 n n 
C5 H51 PG6 sing 501 n n 
C5 H52 PG6 sing 502 n n 
O3 C6 PG6 sing 503 n n 
C6 C7 PG6 sing 504 n n 
C6 H61 PG6 sing 505 n n 
C6 H62 PG6 sing 506 n n 
C7 O4 PG6 sing 507 n n 
C7 H71 PG6 sing 508 n n 
C7 H72 PG6 sing 509 n n 
O4 C8 PG6 sing 510 n n 
C8 C9 PG6 sing 511 n n 
C8 H81 PG6 sing 512 n n 
C8 H82 PG6 sing 513 n n 
C9 O5 PG6 sing 514 n n 
C9 H91 PG6 sing 515 n n 
C9 H92 PG6 sing 516 n n 
O5 C10 PG6 sing 517 n n 
C10 C11 PG6 sing 518 n n 
C10 H101 PG6 sing 519 n n 
C10 H102 PG6 sing 520 n n 
C11 O6 PG6 sing 521 n n 
C11 H111 PG6 sing 522 n n 
C11 H112 PG6 sing 523 n n 
O6 C12 PG6 sing 524 n n 
C12 H121 PG6 sing 525 n n 
C12 H122 PG6 sing 526 n n 
C12 H123 PG6 sing 527 n n 
#
_atom_sites.entry_id                     5DSG 
_atom_sites.fract_transf_matrix[1][1]    0.020623 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001576 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005813 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016533 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 0HK A 1 1201 1119 0HK 0HK . 
D 3 OLA A 1 1202 1120 OLA OLA . 
E 3 OLA A 1 1203 1121 OLA OLA . 
F 4 EDT A 1 1204 1122 EDT EDT . 
G 5 P6G A 1 1205 1124 P6G P6G . 
H 6 OLC A 1 1206 1125 OLC OLC . 
I 6 OLC A 1 1207 1126 OLC OLC . 
J 6 OLC A 1 1208 1127 OLC OLC . 
K 3 OLA A 1 1209 1124 OLA OLA . 
L 2 0HK B 1 1201 1119 0HK 0HK . 
M 6 OLC B 1 1202 1120 OLC OLC . 
N 3 OLA B 1 1203 1121 OLA OLA . 
O 3 OLA B 1 1204 1122 OLA OLA . 
P 5 P6G B 1 1205 1123 P6G P6G . 
Q 6 OLC B 1 1206 1125 OLC OLC . 
R 7 PG6 B 1 1207 1126 PG6 PGE . 
S 8 HOH A 1 1301 1133 HOH HOH . 
S 8 HOH A 2 1302 1138 HOH HOH . 
S 8 HOH A 3 1303 1140 HOH HOH . 
S 8 HOH A 4 1304 1137 HOH HOH . 
S 8 HOH A 5 1305 1135 HOH HOH . 
S 8 HOH A 6 1306 1131 HOH HOH . 
S 8 HOH A 7 1307 1139 HOH HOH . 
S 8 HOH A 8 1308 1132 HOH HOH . 
S 8 HOH A 9 1309 1129 HOH HOH . 
S 8 HOH A 10 1310 1128 HOH HOH . 
S 8 HOH A 11 1311 1144 HOH HOH . 
S 8 HOH A 12 1312 1136 HOH HOH . 
S 8 HOH A 13 1313 1141 HOH HOH . 
S 8 HOH A 14 1314 1134 HOH HOH . 
S 8 HOH A 15 1315 1130 HOH HOH . 
S 8 HOH A 16 1316 1143 HOH HOH . 
S 8 HOH A 17 1317 1142 HOH HOH . 
T 8 HOH B 1 1301 1135 HOH HOH . 
T 8 HOH B 2 1302 1134 HOH HOH . 
T 8 HOH B 3 1303 1130 HOH HOH . 
T 8 HOH B 4 1304 1138 HOH HOH . 
T 8 HOH B 5 1305 1136 HOH HOH . 
T 8 HOH B 6 1306 1128 HOH HOH . 
T 8 HOH B 7 1307 1133 HOH HOH . 
T 8 HOH B 8 1308 1127 HOH HOH . 
T 8 HOH B 9 1309 1132 HOH HOH . 
T 8 HOH B 10 1310 1129 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 PG6 . . . R 7 45.85 59.144 88.753 1 91.31 ? O1 PG6 1207 B 1 
HETATM 2 C C2 PG6 . . . R 7 45.093 59.09 87.538 1 90.93 ? C2 PG6 1207 B 1 
HETATM 3 C C3 PG6 . . . R 7 44.631 60.497 87.182 1 90.93 ? C3 PG6 1207 B 1 
HETATM 4 O O2 PG6 . . . R 7 45.774 61.333 87.015 1 91.28 ? O2 PG6 1207 B 1 
HETATM 5 C C4 PG6 . . . R 7 45.43 62.716 87.05 1 91.18 ? C4 PG6 1207 B 1 
HETATM 6 C C5 PG6 . . . R 7 46.688 63.549 86.837 1 91.15 ? C5 PG6 1207 B 1 
HETATM 7 O O3 PG6 . . . R 7 47.704 63.117 87.74 1 91 ? O3 PG6 1207 B 1 
HETATM 8 C C6 PG6 . . . R 7 48.947 63.765 87.481 1 91.41 ? C6 PG6 1207 B 1 
HETATM 9 C C7 PG6 . . . R 7 50.038 63.14 88.342 1 91.34 ? C7 PG6 1207 B 1 
HETATM 10 O O4 PG6 . . . R 7 51.307 63.691 87.971 1 91.53 ? O4 PG6 1207 B 1 
#
_model_server_stats.io_time_ms              44 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           430 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           10 
#