data_5DSH # _model_server_result.job_id dFuwf3Jir0ujWTcrnXNhlA _model_server_result.datetime_utc '2024-11-22 11:44:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dsh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 5DSH # _exptl.entry_id 5DSH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 348.352 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[3-(benzyloxy)phenyl]-3-nitrobenzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5DSH _cell.length_a 53.33 _cell.length_b 131.332 _cell.length_c 52.852 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DSH _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 95 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 285 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id CAW _struct_conn.ptnr2_label_comp_id 6BH _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 6BH _struct_conn.ptnr2_auth_seq_id 501 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.713 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H16 N2 O4' _chem_comp.formula_weight 348.352 _chem_comp.id 6BH _chem_comp.mon_nstd_flag . _chem_comp.name N-[3-(benzyloxy)phenyl]-3-nitrobenzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAE CAG 6BH doub 1 n y CAE CAF 6BH sing 2 n y CAG CAJ 6BH sing 3 n y CAF CAI 6BH doub 4 n y CAJ CAU 6BH doub 5 n y CAI CAU 6BH sing 6 n y CAU CAQ 6BH sing 7 n n CAQ OAS 6BH sing 8 n n OAS CAX 6BH sing 9 n n CAX CAL 6BH doub 10 n y CAX CAO 6BH sing 11 n y CAL CAH 6BH sing 12 n y CAO CAV 6BH doub 13 n y CAH CAK 6BH doub 14 n y CAV CAK 6BH sing 15 n y CAV NAR 6BH sing 16 n n NAR CAT 6BH sing 17 n n OAA CAT 6BH doub 18 n n CAT CAZ 6BH sing 19 n n CAZ CAP 6BH doub 20 n y CAZ CAW 6BH sing 21 n y CAP CAY 6BH sing 22 n y OAC NBA 6BH sing 23 n n CAW CAM 6BH doub 24 n y CAY NBA 6BH sing 25 n n CAY CAN 6BH doub 26 n y NBA OAB 6BH doub 27 n n CAM CAN 6BH sing 28 n y CAP H1 6BH sing 29 n n CAN H2 6BH sing 30 n n CAM H3 6BH sing 31 n n CAW H4 6BH sing 32 n n NAR H5 6BH sing 33 n n CAO H6 6BH sing 34 n n CAK H7 6BH sing 35 n n CAH H8 6BH sing 36 n n CAL H9 6BH sing 37 n n CAQ H10 6BH sing 38 n n CAQ H11 6BH sing 39 n n CAI H12 6BH sing 40 n n CAF H13 6BH sing 41 n n CAE H14 6BH sing 42 n n CAG H15 6BH sing 43 n n CAJ H16 6BH sing 44 n n # _atom_sites.entry_id 5DSH _atom_sites.fract_transf_matrix[1][1] 0.018751 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007614 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018921 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 6BH A 1 501 501 6BH 6BH . D 4 HOH A 1 601 622 HOH HOH . D 4 HOH A 2 602 605 HOH HOH . D 4 HOH A 3 603 624 HOH HOH . D 4 HOH A 4 604 623 HOH HOH . D 4 HOH A 5 605 614 HOH HOH . D 4 HOH A 6 606 606 HOH HOH . D 4 HOH A 7 607 604 HOH HOH . D 4 HOH A 8 608 607 HOH HOH . D 4 HOH A 9 609 602 HOH HOH . D 4 HOH A 10 610 603 HOH HOH . D 4 HOH A 11 611 608 HOH HOH . D 4 HOH A 12 612 619 HOH HOH . D 4 HOH A 13 613 613 HOH HOH . D 4 HOH A 14 614 612 HOH HOH . D 4 HOH A 15 615 620 HOH HOH . D 4 HOH A 16 616 625 HOH HOH . D 4 HOH A 17 617 601 HOH HOH . D 4 HOH A 18 618 611 HOH HOH . D 4 HOH A 19 619 615 HOH HOH . D 4 HOH A 20 620 610 HOH HOH . D 4 HOH A 21 621 618 HOH HOH . D 4 HOH A 22 622 621 HOH HOH . D 4 HOH A 23 623 617 HOH HOH . D 4 HOH A 24 624 616 HOH HOH . E 4 HOH B 1 801 609 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAB 6BH . . . C 3 17.188 18.191 28.618 1 110.47 ? OAB 6BH 501 A 1 HETATM 2 N NBA 6BH . . . C 3 17.745 18.455 27.37 1 92.65 ? NBA 6BH 501 A 1 HETATM 3 O OAC 6BH . . . C 3 17.26 17.805 26.239 1 96.2 ? OAC 6BH 501 A 1 HETATM 4 C CAY 6BH . . . C 3 18.795 19.375 27.253 1 81.2 ? CAY 6BH 501 A 1 HETATM 5 C CAP 6BH . . . C 3 19.341 19.593 26.014 1 80.37 ? CAP 6BH 501 A 1 HETATM 6 C CAN 6BH . . . C 3 19.221 20.046 28.393 1 81.2 ? CAN 6BH 501 A 1 HETATM 7 C CAM 6BH . . . C 3 20.25 20.965 28.305 1 83.08 ? CAM 6BH 501 A 1 HETATM 8 C CAW 6BH . . . C 3 20.82 21.182 27.063 1 83.33 ? CAW 6BH 501 A 1 HETATM 9 C CAZ 6BH . . . C 3 20.333 20.533 25.952 1 84.6 ? CAZ 6BH 501 A 1 HETATM 10 C CAT 6BH . . . C 3 21.042 20.817 24.704 1 86.62 ? CAT 6BH 501 A 1 HETATM 11 O OAA 6BH . . . C 3 22.184 20.64 24.9 1 86.76 ? OAA 6BH 501 A 1 HETATM 12 N NAR 6BH . . . C 3 20.566 21.208 23.536 1 86.99 ? NAR 6BH 501 A 1 HETATM 13 C CAV 6BH . . . C 3 21.415 21.86 22.687 1 84.52 ? CAV 6BH 501 A 1 HETATM 14 C CAO 6BH . . . C 3 20.881 21.974 21.391 1 83.31 ? CAO 6BH 501 A 1 HETATM 15 C CAK 6BH . . . C 3 22.67 22.474 23.014 1 83.21 ? CAK 6BH 501 A 1 HETATM 16 C CAH 6BH . . . C 3 23.351 23.159 22.017 1 79.25 ? CAH 6BH 501 A 1 HETATM 17 C CAL 6BH . . . C 3 22.802 23.261 20.742 1 76.88 ? CAL 6BH 501 A 1 HETATM 18 C CAX 6BH . . . C 3 21.573 22.677 20.426 1 78.37 ? CAX 6BH 501 A 1 HETATM 19 O OAS 6BH . . . C 3 21.093 22.773 19.143 1 82.91 ? OAS 6BH 501 A 1 HETATM 20 C CAQ 6BH . . . C 3 22.004 22.245 18.14 1 82.57 ? CAQ 6BH 501 A 1 HETATM 21 C CAU 6BH . . . C 3 21.236 21.798 16.923 1 81.26 ? CAU 6BH 501 A 1 HETATM 22 C CAI 6BH . . . C 3 21.105 20.448 16.633 1 82.13 ? CAI 6BH 501 A 1 HETATM 23 C CAF 6BH . . . C 3 20.378 20.031 15.515 1 82.07 ? CAF 6BH 501 A 1 HETATM 24 C CAE 6BH . . . C 3 19.787 20.97 14.678 1 80.4 ? CAE 6BH 501 A 1 HETATM 25 C CAG 6BH . . . C 3 19.919 22.324 14.969 1 83.63 ? CAG 6BH 501 A 1 HETATM 26 C CAJ 6BH . . . C 3 20.645 22.735 16.089 1 83.2 ? CAJ 6BH 501 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 21 _model_server_stats.element_count 26 #