data_5DSU # _model_server_result.job_id 32Lvg_vdXNTpZFNIpfepyQ _model_server_result.datetime_utc '2024-11-22 00:16:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dsu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":103}' # _entry.id 5DSU # _exptl.entry_id 5DSU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.173 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TRIETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5DSU _cell.length_a 38.4 _cell.length_b 38.4 _cell.length_c 81.2 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DSU _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 20 A ASP 20 1_555 B CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc2 A OD1 ASP 22 A ASP 22 1_555 B CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? metalc ? metalc3 A OD1 ASP 24 A ASP 24 1_555 B CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc4 A O THR 26 A THR 26 1_555 B CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc5 A OE1 GLU 31 A GLU 31 1_555 B CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.842 ? metalc ? metalc6 A OE2 GLU 31 A GLU 31 1_555 B CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.71 ? metalc ? metalc7 A OD1 ASP 56 A ASP 56 1_555 C CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc8 A OD1 ASP 58 A ASP 58 1_555 C CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? metalc ? metalc9 A OD1 ASN 60 A ASN 60 1_555 C CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc10 A O THR 62 A THR 62 1_555 C CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc11 A OE1 GLU 67 A GLU 67 1_555 C CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc12 A OE2 GLU 67 A GLU 67 1_555 C CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? metalc ? metalc13 B CA CA . A CA 101 1_555 E O HOH . A HOH 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc14 C CA CA . A CA 102 1_555 E O HOH . A HOH 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? # _chem_comp.formula 'C6 H14 O4' _chem_comp.formula_weight 150.173 _chem_comp.id PGE _chem_comp.mon_nstd_flag . _chem_comp.name 'TRIETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PGE sing 203 n n C1 C2 PGE sing 204 n n C1 H1 PGE sing 205 n n C1 H12 PGE sing 206 n n O1 HO1 PGE sing 207 n n C2 O2 PGE sing 208 n n C2 H2 PGE sing 209 n n C2 H22 PGE sing 210 n n O2 C3 PGE sing 211 n n C3 C4 PGE sing 212 n n C3 H3 PGE sing 213 n n C3 H32 PGE sing 214 n n C4 O3 PGE sing 215 n n C4 H4 PGE sing 216 n n C4 H42 PGE sing 217 n n O4 C6 PGE sing 218 n n O4 HO4 PGE sing 219 n n C6 C5 PGE sing 220 n n C6 H6 PGE sing 221 n n C6 H62 PGE sing 222 n n C5 O3 PGE sing 223 n n C5 H5 PGE sing 224 n n C5 H52 PGE sing 225 n n # _atom_sites.entry_id 5DSU _atom_sites.fract_transf_matrix[1][1] 0.026042 _atom_sites.fract_transf_matrix[1][2] 0.015035 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.03007 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012315 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 101 78 CA CA . C 2 CA A 1 102 79 CA CA . D 3 PGE A 1 103 80 PGE PEG . E 4 HOH A 1 201 83 HOH HOH . E 4 HOH A 2 202 130 HOH HOH . E 4 HOH A 3 203 132 HOH HOH . E 4 HOH A 4 204 108 HOH HOH . E 4 HOH A 5 205 88 HOH HOH . E 4 HOH A 6 206 136 HOH HOH . E 4 HOH A 7 207 104 HOH HOH . E 4 HOH A 8 208 87 HOH HOH . E 4 HOH A 9 209 94 HOH HOH . E 4 HOH A 10 210 115 HOH HOH . E 4 HOH A 11 211 122 HOH HOH . E 4 HOH A 12 212 109 HOH HOH . E 4 HOH A 13 213 92 HOH HOH . E 4 HOH A 14 214 103 HOH HOH . E 4 HOH A 15 215 91 HOH HOH . E 4 HOH A 16 216 111 HOH HOH . E 4 HOH A 17 217 106 HOH HOH . E 4 HOH A 18 218 86 HOH HOH . E 4 HOH A 19 219 82 HOH HOH . E 4 HOH A 20 220 85 HOH HOH . E 4 HOH A 21 221 84 HOH HOH . E 4 HOH A 22 222 81 HOH HOH . E 4 HOH A 23 223 114 HOH HOH . E 4 HOH A 24 224 97 HOH HOH . E 4 HOH A 25 225 131 HOH HOH . E 4 HOH A 26 226 121 HOH HOH . E 4 HOH A 27 227 107 HOH HOH . E 4 HOH A 28 228 93 HOH HOH . E 4 HOH A 29 229 129 HOH HOH . E 4 HOH A 30 230 119 HOH HOH . E 4 HOH A 31 231 96 HOH HOH . E 4 HOH A 32 232 135 HOH HOH . E 4 HOH A 33 233 105 HOH HOH . E 4 HOH A 34 234 123 HOH HOH . E 4 HOH A 35 235 125 HOH HOH . E 4 HOH A 36 236 127 HOH HOH . E 4 HOH A 37 237 99 HOH HOH . E 4 HOH A 38 238 133 HOH HOH . E 4 HOH A 39 239 120 HOH HOH . E 4 HOH A 40 240 95 HOH HOH . E 4 HOH A 41 241 117 HOH HOH . E 4 HOH A 42 242 90 HOH HOH . E 4 HOH A 43 243 89 HOH HOH . E 4 HOH A 44 244 134 HOH HOH . E 4 HOH A 45 245 124 HOH HOH . E 4 HOH A 46 246 100 HOH HOH . E 4 HOH A 47 247 101 HOH HOH . E 4 HOH A 48 248 110 HOH HOH . E 4 HOH A 49 249 128 HOH HOH . E 4 HOH A 50 250 102 HOH HOH . E 4 HOH A 51 251 98 HOH HOH . E 4 HOH A 52 252 126 HOH HOH . E 4 HOH A 53 253 112 HOH HOH . E 4 HOH A 54 254 116 HOH HOH . E 4 HOH A 55 255 113 HOH HOH . E 4 HOH A 56 256 118 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGE . . . D 3 5.646 -12.322 -14.356 0.8 31.23 ? C1 PGE 103 A 1 HETATM 2 O O1 PGE . . . D 3 6.28 -12.049 -13.079 0.8 31.25 ? O1 PGE 103 A 1 HETATM 3 C C2 PGE . . . D 3 4.864 -11.092 -14.943 0.8 31.57 ? C2 PGE 103 A 1 HETATM 4 O O2 PGE . . . D 3 3.866 -10.71 -13.993 0.8 37.27 ? O2 PGE 103 A 1 HETATM 5 C C3 PGE . . . D 3 2.526 -10.596 -14.544 0.8 34.48 ? C3 PGE 103 A 1 HETATM 6 C C4 PGE . . . D 3 2.074 -9.129 -14.617 0.8 34.03 ? C4 PGE 103 A 1 HETATM 7 O O4 PGE . . . D 3 3.848 -7.553 -11.179 0.8 35.03 ? O4 PGE 103 A 1 HETATM 8 C C6 PGE . . . D 3 3.593 -7.609 -12.577 0.8 32.01 ? C6 PGE 103 A 1 HETATM 9 C C5 PGE . . . D 3 2.082 -7.525 -12.778 0.8 31.07 ? C5 PGE 103 A 1 HETATM 10 O O3 PGE . . . D 3 1.54 -8.751 -13.368 0.8 35.86 ? O3 PGE 103 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 10 #