data_5DT4 # _model_server_result.job_id ZtktWNrEXFaJfOxbbcC-0g _model_server_result.datetime_utc '2024-11-28 02:02:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dt4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5DT4 # _exptl.entry_id 5DT4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 346.151 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(3-bromophenyl)-8-fluoroquinoline-4-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5DT4 _cell.length_a 82.5 _cell.length_b 82.5 _cell.length_c 170.02 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DT4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 138 A ASN 261 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc2 A OD2 ASP 151 A ASP 274 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? metalc ? metalc3 B MG MG . A MG 401 1_555 D O1B ATP . A ATP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? # _chem_comp.formula 'C16 H9 Br F N O2' _chem_comp.formula_weight 346.151 _chem_comp.id 5DN _chem_comp.mon_nstd_flag . _chem_comp.name '2-(3-bromophenyl)-8-fluoroquinoline-4-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O03 C02 5DN doub 1 n n C02 O01 5DN sing 2 n n C02 C04 5DN sing 3 n n C20 C19 5DN doub 4 n y C20 C21 5DN sing 5 n y C19 C18 5DN sing 6 n y C04 C21 5DN doub 7 n y C04 C05 5DN sing 8 n y C21 C15 5DN sing 9 n y C05 C06 5DN doub 10 n y C18 C16 5DN doub 11 n y C15 C16 5DN sing 12 n y C15 N14 5DN doub 13 n y C16 F17 5DN sing 14 n n C06 N14 5DN sing 15 n y C06 C07 5DN sing 16 n n C08 C07 5DN doub 17 n y C08 C09 5DN sing 18 n y C07 C13 5DN sing 19 n y C09 C10 5DN doub 20 n y C13 C11 5DN doub 21 n y C10 C11 5DN sing 22 n y C11 BR 5DN sing 23 n n O01 H1 5DN sing 24 n n C05 H2 5DN sing 25 n n C08 H3 5DN sing 26 n n C09 H4 5DN sing 27 n n C10 H5 5DN sing 28 n n C13 H6 5DN sing 29 n n C18 H7 5DN sing 30 n n C19 H8 5DN sing 31 n n C20 H9 5DN sing 32 n n # _atom_sites.entry_id 5DT4 _atom_sites.fract_transf_matrix[1][1] 0.012121 _atom_sites.fract_transf_matrix[1][2] 0.006998 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013996 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005882 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 401 1 MG MG . C 3 5DN A 1 402 1 5DN 035 . D 4 ATP A 1 403 1 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O01 5DN . . . C 3 -5.033 -6.107 13.301 1 203.26 ? O01 5DN 402 A 1 HETATM 2 C C02 5DN . . . C 3 -6.229 -6.317 12.929 1 202.8 ? C02 5DN 402 A 1 HETATM 3 O O03 5DN . . . C 3 -7.069 -5.374 12.777 1 202.47 ? O03 5DN 402 A 1 HETATM 4 C C04 5DN . . . C 3 -6.689 -7.846 12.669 1 201.88 ? C04 5DN 402 A 1 HETATM 5 C C05 5DN . . . C 3 -6.514 -8.774 13.719 1 201.42 ? C05 5DN 402 A 1 HETATM 6 C C06 5DN . . . C 3 -6.91 -10.165 13.537 1 201.23 ? C06 5DN 402 A 1 HETATM 7 C C07 5DN . . . C 3 -6.793 -11.178 14.619 1 202.65 ? C07 5DN 402 A 1 HETATM 8 C C08 5DN . . . C 3 -6.225 -10.901 15.896 1 203.19 ? C08 5DN 402 A 1 HETATM 9 C C09 5DN . . . C 3 -6.151 -11.92 16.886 1 203.78 ? C09 5DN 402 A 1 HETATM 10 C C10 5DN . . . C 3 -6.67 -13.221 16.628 1 204.75 ? C10 5DN 402 A 1 HETATM 11 C C11 5DN . . . C 3 -7.245 -13.469 15.365 1 206.36 ? C11 5DN 402 A 1 HETATM 12 BR BR 5DN . . . C 3 -8.002 -15.245 14.906 1 209.59 ? BR 5DN 402 A 1 HETATM 13 C C13 5DN . . . C 3 -7.313 -12.476 14.383 1 204.24 ? C13 5DN 402 A 1 HETATM 14 N N14 5DN . . . C 3 -7.464 -10.598 12.364 1 200.12 ? N14 5DN 402 A 1 HETATM 15 C C15 5DN . . . C 3 -7.639 -9.706 11.325 1 200.13 ? C15 5DN 402 A 1 HETATM 16 C C16 5DN . . . C 3 -8.232 -10.183 10.094 1 199.72 ? C16 5DN 402 A 1 HETATM 17 F F17 5DN . . . C 3 -8.615 -11.5 9.948 1 199.44 ? F17 5DN 402 A 1 HETATM 18 C C18 5DN . . . C 3 -8.464 -9.386 8.991 1 199.7 ? C18 5DN 402 A 1 HETATM 19 C C19 5DN . . . C 3 -8.075 -8.007 9.089 1 200.17 ? C19 5DN 402 A 1 HETATM 20 C C20 5DN . . . C 3 -7.503 -7.485 10.272 1 200.75 ? C20 5DN 402 A 1 HETATM 21 C C21 5DN . . . C 3 -7.277 -8.334 11.418 1 200.98 ? C21 5DN 402 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 21 #