data_5DT6 # _model_server_result.job_id CiEr84UadjsjocFirGZq_A _model_server_result.datetime_utc '2024-11-28 00:48:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dt6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5DT6 # _exptl.entry_id 5DT6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 147.129 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'GLUTAMIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5DT6 _cell.length_a 53.396 _cell.length_b 58.351 _cell.length_c 100.179 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DT6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 211 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 211 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 266 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 266 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.033 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C5 H9 N O4' _chem_comp.formula_weight 147.129 _chem_comp.id GLU _chem_comp.mon_nstd_flag y _chem_comp.name 'GLUTAMIC ACID' _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA GLU sing 102 n n N H GLU sing 103 n n N H2 GLU sing 104 n n CA C GLU sing 105 n n CA CB GLU sing 106 n n CA HA GLU sing 107 n n C O GLU doub 108 n n C OXT GLU sing 109 n n CB CG GLU sing 110 n n CB HB2 GLU sing 111 n n CB HB3 GLU sing 112 n n CG CD GLU sing 113 n n CG HG2 GLU sing 114 n n CG HG3 GLU sing 115 n n CD OE1 GLU doub 116 n n CD OE2 GLU sing 117 n n OE2 HE2 GLU sing 118 n n OXT HXT GLU sing 119 n n # _atom_sites.entry_id 5DT6 _atom_sites.fract_transf_matrix[1][1] 0.018728 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017138 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009982 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GLU A 1 301 1 GLU GLU . C 3 GOL A 1 302 1 GOL GOL . D 3 GOL A 1 303 2 GOL GOL . E 4 HOH A 1 401 243 HOH HOH . E 4 HOH A 2 402 198 HOH HOH . E 4 HOH A 3 403 183 HOH HOH . E 4 HOH A 4 404 110 HOH HOH . E 4 HOH A 5 405 137 HOH HOH . E 4 HOH A 6 406 90 HOH HOH . E 4 HOH A 7 407 114 HOH HOH . E 4 HOH A 8 408 37 HOH HOH . E 4 HOH A 9 409 109 HOH HOH . E 4 HOH A 10 410 128 HOH HOH . E 4 HOH A 11 411 117 HOH HOH . E 4 HOH A 12 412 129 HOH HOH . E 4 HOH A 13 413 127 HOH HOH . E 4 HOH A 14 414 62 HOH HOH . E 4 HOH A 15 415 71 HOH HOH . E 4 HOH A 16 416 236 HOH HOH . E 4 HOH A 17 417 216 HOH HOH . E 4 HOH A 18 418 68 HOH HOH . E 4 HOH A 19 419 22 HOH HOH . E 4 HOH A 20 420 119 HOH HOH . E 4 HOH A 21 421 136 HOH HOH . E 4 HOH A 22 422 163 HOH HOH . E 4 HOH A 23 423 12 HOH HOH . E 4 HOH A 24 424 205 HOH HOH . E 4 HOH A 25 425 131 HOH HOH . E 4 HOH A 26 426 242 HOH HOH . E 4 HOH A 27 427 96 HOH HOH . E 4 HOH A 28 428 116 HOH HOH . E 4 HOH A 29 429 93 HOH HOH . E 4 HOH A 30 430 42 HOH HOH . E 4 HOH A 31 431 1 HOH HOH . E 4 HOH A 32 432 175 HOH HOH . E 4 HOH A 33 433 190 HOH HOH . E 4 HOH A 34 434 102 HOH HOH . E 4 HOH A 35 435 141 HOH HOH . E 4 HOH A 36 436 212 HOH HOH . E 4 HOH A 37 437 39 HOH HOH . E 4 HOH A 38 438 108 HOH HOH . E 4 HOH A 39 439 25 HOH HOH . E 4 HOH A 40 440 11 HOH HOH . E 4 HOH A 41 441 179 HOH HOH . E 4 HOH A 42 442 106 HOH HOH . E 4 HOH A 43 443 58 HOH HOH . E 4 HOH A 44 444 66 HOH HOH . E 4 HOH A 45 445 38 HOH HOH . E 4 HOH A 46 446 27 HOH HOH . E 4 HOH A 47 447 72 HOH HOH . E 4 HOH A 48 448 174 HOH HOH . E 4 HOH A 49 449 65 HOH HOH . E 4 HOH A 50 450 9 HOH HOH . E 4 HOH A 51 451 237 HOH HOH . E 4 HOH A 52 452 184 HOH HOH . E 4 HOH A 53 453 168 HOH HOH . E 4 HOH A 54 454 23 HOH HOH . E 4 HOH A 55 455 120 HOH HOH . E 4 HOH A 56 456 192 HOH HOH . E 4 HOH A 57 457 180 HOH HOH . E 4 HOH A 58 458 107 HOH HOH . E 4 HOH A 59 459 76 HOH HOH . E 4 HOH A 60 460 5 HOH HOH . E 4 HOH A 61 461 29 HOH HOH . E 4 HOH A 62 462 169 HOH HOH . E 4 HOH A 63 463 80 HOH HOH . E 4 HOH A 64 464 153 HOH HOH . E 4 HOH A 65 465 112 HOH HOH . E 4 HOH A 66 466 156 HOH HOH . E 4 HOH A 67 467 213 HOH HOH . E 4 HOH A 68 468 4 HOH HOH . E 4 HOH A 69 469 185 HOH HOH . E 4 HOH A 70 470 201 HOH HOH . E 4 HOH A 71 471 41 HOH HOH . E 4 HOH A 72 472 16 HOH HOH . E 4 HOH A 73 473 18 HOH HOH . E 4 HOH A 74 474 52 HOH HOH . E 4 HOH A 75 475 235 HOH HOH . E 4 HOH A 76 476 230 HOH HOH . E 4 HOH A 77 477 160 HOH HOH . E 4 HOH A 78 478 211 HOH HOH . E 4 HOH A 79 479 195 HOH HOH . E 4 HOH A 80 480 140 HOH HOH . E 4 HOH A 81 481 20 HOH HOH . E 4 HOH A 82 482 113 HOH HOH . E 4 HOH A 83 483 3 HOH HOH . E 4 HOH A 84 484 79 HOH HOH . E 4 HOH A 85 485 152 HOH HOH . E 4 HOH A 86 486 147 HOH HOH . E 4 HOH A 87 487 24 HOH HOH . E 4 HOH A 88 488 103 HOH HOH . E 4 HOH A 89 489 28 HOH HOH . E 4 HOH A 90 490 138 HOH HOH . E 4 HOH A 91 491 32 HOH HOH . E 4 HOH A 92 492 10 HOH HOH . E 4 HOH A 93 493 61 HOH HOH . E 4 HOH A 94 494 6 HOH HOH . E 4 HOH A 95 495 60 HOH HOH . E 4 HOH A 96 496 246 HOH HOH . E 4 HOH A 97 497 17 HOH HOH . E 4 HOH A 98 498 49 HOH HOH . E 4 HOH A 99 499 59 HOH HOH . E 4 HOH A 100 500 2 HOH HOH . E 4 HOH A 101 501 14 HOH HOH . E 4 HOH A 102 502 92 HOH HOH . E 4 HOH A 103 503 118 HOH HOH . E 4 HOH A 104 504 19 HOH HOH . E 4 HOH A 105 505 13 HOH HOH . E 4 HOH A 106 506 97 HOH HOH . E 4 HOH A 107 507 81 HOH HOH . E 4 HOH A 108 508 123 HOH HOH . E 4 HOH A 109 509 146 HOH HOH . E 4 HOH A 110 510 48 HOH HOH . E 4 HOH A 111 511 204 HOH HOH . E 4 HOH A 112 512 104 HOH HOH . E 4 HOH A 113 513 88 HOH HOH . E 4 HOH A 114 514 8 HOH HOH . E 4 HOH A 115 515 78 HOH HOH . E 4 HOH A 116 516 46 HOH HOH . E 4 HOH A 117 517 245 HOH HOH . E 4 HOH A 118 518 83 HOH HOH . E 4 HOH A 119 519 100 HOH HOH . E 4 HOH A 120 520 57 HOH HOH . E 4 HOH A 121 521 15 HOH HOH . E 4 HOH A 122 522 144 HOH HOH . E 4 HOH A 123 523 194 HOH HOH . E 4 HOH A 124 524 95 HOH HOH . E 4 HOH A 125 525 40 HOH HOH . E 4 HOH A 126 526 234 HOH HOH . E 4 HOH A 127 527 142 HOH HOH . E 4 HOH A 128 528 75 HOH HOH . E 4 HOH A 129 529 143 HOH HOH . E 4 HOH A 130 530 121 HOH HOH . E 4 HOH A 131 531 43 HOH HOH . E 4 HOH A 132 532 98 HOH HOH . E 4 HOH A 133 533 94 HOH HOH . E 4 HOH A 134 534 196 HOH HOH . E 4 HOH A 135 535 74 HOH HOH . E 4 HOH A 136 536 77 HOH HOH . E 4 HOH A 137 537 149 HOH HOH . E 4 HOH A 138 538 26 HOH HOH . E 4 HOH A 139 539 178 HOH HOH . E 4 HOH A 140 540 50 HOH HOH . E 4 HOH A 141 541 35 HOH HOH . E 4 HOH A 142 542 31 HOH HOH . E 4 HOH A 143 543 7 HOH HOH . E 4 HOH A 144 544 45 HOH HOH . E 4 HOH A 145 545 233 HOH HOH . E 4 HOH A 146 546 218 HOH HOH . E 4 HOH A 147 547 30 HOH HOH . E 4 HOH A 148 548 91 HOH HOH . E 4 HOH A 149 549 232 HOH HOH . E 4 HOH A 150 550 241 HOH HOH . E 4 HOH A 151 551 64 HOH HOH . E 4 HOH A 152 552 73 HOH HOH . E 4 HOH A 153 553 124 HOH HOH . E 4 HOH A 154 554 166 HOH HOH . E 4 HOH A 155 555 182 HOH HOH . E 4 HOH A 156 556 229 HOH HOH . E 4 HOH A 157 557 220 HOH HOH . E 4 HOH A 158 558 70 HOH HOH . E 4 HOH A 159 559 210 HOH HOH . E 4 HOH A 160 560 84 HOH HOH . E 4 HOH A 161 561 67 HOH HOH . E 4 HOH A 162 562 162 HOH HOH . E 4 HOH A 163 563 240 HOH HOH . E 4 HOH A 164 564 132 HOH HOH . E 4 HOH A 165 565 105 HOH HOH . E 4 HOH A 166 566 56 HOH HOH . E 4 HOH A 167 567 21 HOH HOH . E 4 HOH A 168 568 207 HOH HOH . E 4 HOH A 169 569 151 HOH HOH . E 4 HOH A 170 570 111 HOH HOH . E 4 HOH A 171 571 122 HOH HOH . E 4 HOH A 172 572 87 HOH HOH . E 4 HOH A 173 573 223 HOH HOH . E 4 HOH A 174 574 69 HOH HOH . E 4 HOH A 175 575 203 HOH HOH . E 4 HOH A 176 576 55 HOH HOH . E 4 HOH A 177 577 44 HOH HOH . E 4 HOH A 178 578 200 HOH HOH . E 4 HOH A 179 579 148 HOH HOH . E 4 HOH A 180 580 63 HOH HOH . E 4 HOH A 181 581 217 HOH HOH . E 4 HOH A 182 582 209 HOH HOH . E 4 HOH A 183 583 215 HOH HOH . E 4 HOH A 184 584 86 HOH HOH . E 4 HOH A 185 585 199 HOH HOH . E 4 HOH A 186 586 133 HOH HOH . E 4 HOH A 187 587 51 HOH HOH . E 4 HOH A 188 588 130 HOH HOH . E 4 HOH A 189 589 126 HOH HOH . E 4 HOH A 190 590 206 HOH HOH . E 4 HOH A 191 591 159 HOH HOH . E 4 HOH A 192 592 53 HOH HOH . E 4 HOH A 193 593 219 HOH HOH . E 4 HOH A 194 594 54 HOH HOH . E 4 HOH A 195 595 177 HOH HOH . E 4 HOH A 196 596 187 HOH HOH . E 4 HOH A 197 597 170 HOH HOH . E 4 HOH A 198 598 85 HOH HOH . E 4 HOH A 199 599 154 HOH HOH . E 4 HOH A 200 600 239 HOH HOH . E 4 HOH A 201 601 165 HOH HOH . E 4 HOH A 202 602 115 HOH HOH . E 4 HOH A 203 603 197 HOH HOH . E 4 HOH A 204 604 226 HOH HOH . E 4 HOH A 205 605 34 HOH HOH . E 4 HOH A 206 606 145 HOH HOH . E 4 HOH A 207 607 188 HOH HOH . E 4 HOH A 208 608 139 HOH HOH . E 4 HOH A 209 609 82 HOH HOH . E 4 HOH A 210 610 155 HOH HOH . E 4 HOH A 211 611 225 HOH HOH . E 4 HOH A 212 612 214 HOH HOH . E 4 HOH A 213 613 222 HOH HOH . E 4 HOH A 214 614 36 HOH HOH . E 4 HOH A 215 615 189 HOH HOH . E 4 HOH A 216 616 176 HOH HOH . E 4 HOH A 217 617 171 HOH HOH . E 4 HOH A 218 618 167 HOH HOH . E 4 HOH A 219 619 186 HOH HOH . E 4 HOH A 220 620 150 HOH HOH . E 4 HOH A 221 621 228 HOH HOH . E 4 HOH A 222 622 173 HOH HOH . E 4 HOH A 223 623 244 HOH HOH . E 4 HOH A 224 624 164 HOH HOH . E 4 HOH A 225 625 193 HOH HOH . E 4 HOH A 226 626 231 HOH HOH . E 4 HOH A 227 627 101 HOH HOH . E 4 HOH A 228 628 202 HOH HOH . E 4 HOH A 229 629 172 HOH HOH . E 4 HOH A 230 630 181 HOH HOH . E 4 HOH A 231 631 89 HOH HOH . E 4 HOH A 232 632 125 HOH HOH . E 4 HOH A 233 633 157 HOH HOH . E 4 HOH A 234 634 135 HOH HOH . E 4 HOH A 235 635 161 HOH HOH . E 4 HOH A 236 636 134 HOH HOH . E 4 HOH A 237 637 224 HOH HOH . E 4 HOH A 238 638 238 HOH HOH . E 4 HOH A 239 639 158 HOH HOH . E 4 HOH A 240 640 99 HOH HOH . E 4 HOH A 241 641 191 HOH HOH . E 4 HOH A 242 642 227 HOH HOH . E 4 HOH A 243 643 33 HOH HOH . E 4 HOH A 244 644 221 HOH HOH . E 4 HOH A 245 645 208 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N GLU . . . B 2 9.683 -1.502 -7.219 1 17.51 ? N GLU 301 A 1 HETATM 2 C CA GLU . . . B 2 9.935 -2.192 -8.513 1 16.45 ? CA GLU 301 A 1 HETATM 3 C C GLU . . . B 2 9.168 -3.506 -8.544 1 16.03 ? C GLU 301 A 1 HETATM 4 O O GLU . . . B 2 9.271 -4.224 -9.547 1 15.81 ? O GLU 301 A 1 HETATM 5 C CB GLU . . . B 2 11.424 -2.43 -8.776 1 16.44 ? CB GLU 301 A 1 HETATM 6 C CG GLU . . . B 2 12.104 -1.15 -9.323 1 16.33 ? CG GLU 301 A 1 HETATM 7 C CD GLU . . . B 2 11.675 -0.783 -10.733 1 16.93 ? CD GLU 301 A 1 HETATM 8 O OE1 GLU . . . B 2 11.077 -1.613 -11.45 1 16.6 ? OE1 GLU 301 A 1 HETATM 9 O OE2 GLU . . . B 2 11.996 0.384 -11.137 1 17.68 ? OE2 GLU 301 A 1 HETATM 10 O OXT GLU . . . B 2 8.448 -3.812 -7.569 1 15.37 ? OXT GLU 301 A 1 HETATM 11 H H1 GLU . . . B 2 10.113 -0.722 -7.21 1 21.01 ? H1 GLU 301 A 1 HETATM 12 H H2 GLU . . . B 2 8.809 -1.359 -7.124 1 21.01 ? H2 GLU 301 A 1 HETATM 13 H H3 GLU . . . B 2 9.975 -2.01 -6.55 1 21.01 ? H3 GLU 301 A 1 HETATM 14 H HA GLU . . . B 2 9.595 -1.637 -9.232 1 19.74 ? HA GLU 301 A 1 HETATM 15 H HB2 GLU . . . B 2 11.861 -2.678 -7.947 1 19.73 ? HB2 GLU 301 A 1 HETATM 16 H HB3 GLU . . . B 2 11.525 -3.135 -9.435 1 19.73 ? HB3 GLU 301 A 1 HETATM 17 H HG2 GLU . . . B 2 11.882 -0.405 -8.743 1 19.59 ? HG2 GLU 301 A 1 HETATM 18 H HG3 GLU . . . B 2 13.065 -1.285 -9.331 1 19.59 ? HG3 GLU 301 A 1 # _model_server_stats.io_time_ms 92 _model_server_stats.parse_time_ms 82 _model_server_stats.create_model_time_ms 38 _model_server_stats.query_time_ms 402 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 18 #