data_5DTE # _model_server_result.job_id c7i5Am76XlzMIOxRmpamKA _model_server_result.datetime_utc '2024-11-15 05:49:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dte # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 5DTE # _exptl.entry_id 5DTE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description beta-D-allopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 101.13 _cell.angle_beta 103.29 _cell.angle_gamma 91.35 _cell.entry_id 5DTE _cell.length_a 62.19 _cell.length_b 63.218 _cell.length_c 71.201 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DTE _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I 1 1 B,F,J 2 1 C,G,K 3 1 D,H,L 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id ALL _chem_comp.mon_nstd_flag . _chem_comp.name beta-D-allopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms beta-D-allose;D-allose;allose;D-ALLOPYRANOSE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 ALL sing 13 n n C1 O1 ALL sing 14 n n C1 O5 ALL sing 15 n n C1 H1 ALL sing 16 n n C2 C3 ALL sing 17 n n C2 O2 ALL sing 18 n n C2 H2 ALL sing 19 n n C3 C4 ALL sing 20 n n C3 O3 ALL sing 21 n n C3 H3 ALL sing 22 n n C4 C5 ALL sing 23 n n C4 O4 ALL sing 24 n n C4 H4 ALL sing 25 n n C5 C6 ALL sing 26 n n C5 O5 ALL sing 27 n n C5 H5 ALL sing 28 n n C6 O6 ALL sing 29 n n C6 H61 ALL sing 30 n n C6 H62 ALL sing 31 n n O1 HO1 ALL sing 32 n n O2 HO2 ALL sing 33 n n O3 HO3 ALL sing 34 n n O4 HO4 ALL sing 35 n n O6 HO6 ALL sing 36 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version ALL DAllpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 ALL b-D-allopyranose 'COMMON NAME' GMML 1 ALL b-D-Allp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 ALL All 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 5DTE _atom_sites.fract_transf_matrix[1][1] 0.01608 _atom_sites.fract_transf_matrix[1][2] 0.000378 _atom_sites.fract_transf_matrix[1][3] 0.003959 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015823 _atom_sites.fract_transf_matrix[2][3] 0.003298 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014741 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ALL A 1 401 1 ALL ALL . F 2 ALL B 1 401 3 ALL ALL . G 2 ALL C 1 401 4 ALL ALL . H 2 ALL D 1 401 2 ALL ALL . I 3 HOH A 1 502 23 HOH HOH . I 3 HOH A 2 503 62 HOH HOH . I 3 HOH A 3 504 108 HOH HOH . I 3 HOH A 4 505 132 HOH HOH . I 3 HOH A 5 507 51 HOH HOH . I 3 HOH A 6 508 148 HOH HOH . I 3 HOH A 7 509 149 HOH HOH . I 3 HOH A 8 510 96 HOH HOH . I 3 HOH A 9 511 144 HOH HOH . I 3 HOH A 10 512 45 HOH HOH . I 3 HOH A 11 513 106 HOH HOH . I 3 HOH A 12 514 145 HOH HOH . I 3 HOH A 13 515 146 HOH HOH . J 3 HOH B 1 501 70 HOH HOH . J 3 HOH B 2 502 30 HOH HOH . J 3 HOH B 3 503 14 HOH HOH . J 3 HOH B 4 504 69 HOH HOH . J 3 HOH B 5 505 27 HOH HOH . J 3 HOH B 6 506 31 HOH HOH . J 3 HOH B 7 507 151 HOH HOH . J 3 HOH B 8 508 57 HOH HOH . J 3 HOH B 9 509 115 HOH HOH . J 3 HOH B 10 510 123 HOH HOH . J 3 HOH B 11 511 150 HOH HOH . J 3 HOH B 12 512 40 HOH HOH . J 3 HOH B 13 513 48 HOH HOH . J 3 HOH B 14 515 33 HOH HOH . J 3 HOH B 15 516 140 HOH HOH . J 3 HOH B 16 517 141 HOH HOH . K 3 HOH C 1 501 25 HOH HOH . K 3 HOH C 2 502 135 HOH HOH . K 3 HOH C 3 503 120 HOH HOH . K 3 HOH C 4 504 143 HOH HOH . K 3 HOH C 5 505 136 HOH HOH . K 3 HOH C 6 506 39 HOH HOH . K 3 HOH C 7 507 50 HOH HOH . K 3 HOH C 8 508 43 HOH HOH . K 3 HOH C 9 509 139 HOH HOH . K 3 HOH C 10 510 126 HOH HOH . K 3 HOH C 11 511 104 HOH HOH . L 3 HOH D 1 501 105 HOH HOH . L 3 HOH D 2 502 124 HOH HOH . L 3 HOH D 3 503 129 HOH HOH . L 3 HOH D 4 504 64 HOH HOH . L 3 HOH D 5 505 20 HOH HOH . L 3 HOH D 6 506 131 HOH HOH . L 3 HOH D 7 507 77 HOH HOH . L 3 HOH D 8 508 153 HOH HOH . L 3 HOH D 9 509 127 HOH HOH . L 3 HOH D 10 510 56 HOH HOH . L 3 HOH D 11 511 114 HOH HOH . L 3 HOH D 12 512 100 HOH HOH . L 3 HOH D 13 513 134 HOH HOH . L 3 HOH D 14 514 138 HOH HOH . L 3 HOH D 15 515 133 HOH HOH . L 3 HOH D 16 516 152 HOH HOH . L 3 HOH D 17 517 111 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ALL . . . F 2 -0.222 -15.24 29.087 1 23.73 ? C1 ALL 401 B 1 HETATM 2 C C2 ALL . . . F 2 -0.268 -15.002 30.587 1 24.07 ? C2 ALL 401 B 1 HETATM 3 C C3 ALL . . . F 2 -1.374 -14.115 30.985 1 28.43 ? C3 ALL 401 B 1 HETATM 4 C C4 ALL . . . F 2 -1.426 -12.879 30.13 1 29.45 ? C4 ALL 401 B 1 HETATM 5 C C5 ALL . . . F 2 -1.474 -13.246 28.644 1 21.78 ? C5 ALL 401 B 1 HETATM 6 C C6 ALL . . . F 2 -1.688 -12.077 27.726 1 20.76 ? C6 ALL 401 B 1 HETATM 7 O O1 ALL . . . F 2 0.899 -15.971 28.767 1 36.85 ? O1 ALL 401 B 1 HETATM 8 O O2 ALL . . . F 2 -0.468 -16.258 31.266 1 25.5 ? O2 ALL 401 B 1 HETATM 9 O O3 ALL . . . F 2 -2.6 -14.886 30.843 1 32.44 ? O3 ALL 401 B 1 HETATM 10 O O4 ALL . . . F 2 -2.542 -12.057 30.518 1 28.42 ? O4 ALL 401 B 1 HETATM 11 O O5 ALL . . . F 2 -0.262 -13.978 28.266 1 11.73 ? O5 ALL 401 B 1 HETATM 12 O O6 ALL . . . F 2 -0.827 -11.012 28.07 1 35.82 ? O6 ALL 401 B 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 12 #