data_5DTJ # _model_server_result.job_id dYAKA77qmS4Vz-O3hbH63g _model_server_result.datetime_utc '2024-11-12 19:51:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dtj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 5DTJ # _exptl.entry_id 5DTJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 299.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[5-(2,4-dichlorophenoxy)pentyl]-1H-imidazole _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5DTJ _cell.length_a 79.487 _cell.length_b 113.367 _cell.length_c 227.117 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DTJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 72 A CYS 69 1_555 A SG CYS 99 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 260 A CYS 257 1_555 A SG CYS 275 A CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf3 A SG CYS 412 A CYS 409 1_555 A SG CYS 532 A CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf4 B SG CYS 72 B CYS 69 1_555 B SG CYS 99 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf5 B SG CYS 260 B CYS 257 1_555 B SG CYS 275 B CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? disulf ? disulf6 B SG CYS 412 B CYS 409 1_555 B SG CYS 532 B CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? covale ? covale1 A C GLU 205 A GLU 202 1_555 A N MIS 206 A MIS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C MIS 206 A MIS 203 1_555 A N ALA 207 A ALA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 B C GLU 205 B GLU 202 1_555 B N MIS 206 B MIS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 B C MIS 206 B MIS 203 1_555 B N ALA 207 B ALA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? # _chem_comp.formula 'C14 H16 Cl2 N2 O' _chem_comp.formula_weight 299.196 _chem_comp.id 5G8 _chem_comp.mon_nstd_flag . _chem_comp.name 1-[5-(2,4-dichlorophenoxy)pentyl]-1H-imidazole _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C13 N14 5G8 doub 1 n y C13 N12 5G8 sing 2 n y N14 C15 5G8 sing 3 n y N12 C11 5G8 sing 4 n n N12 C16 5G8 sing 5 n y C15 C16 5G8 doub 6 n y C11 C10 5G8 sing 7 n n C10 C9 5G8 sing 8 n n CL4 C4 5G8 sing 9 n n C5 C6 5G8 doub 10 n y C5 C4 5G8 sing 11 n y C6 C1 5G8 sing 12 n y C4 C3 5G8 doub 13 n y C9 C8 5G8 sing 14 n n C8 C7 5G8 sing 15 n n C7 O1 5G8 sing 16 n n C1 O1 5G8 sing 17 n n C1 C2 5G8 doub 18 n y C3 C2 5G8 sing 19 n y C2 CL2 5G8 sing 20 n n C3 H1 5G8 sing 21 n n C5 H2 5G8 sing 22 n n C6 H3 5G8 sing 23 n n C7 H4 5G8 sing 24 n n C7 H5 5G8 sing 25 n n C8 H6 5G8 sing 26 n n C8 H7 5G8 sing 27 n n C9 H8 5G8 sing 28 n n C9 H9 5G8 sing 29 n n C10 H10 5G8 sing 30 n n C10 H11 5G8 sing 31 n n C11 H12 5G8 sing 32 n n C11 H13 5G8 sing 33 n n C16 H14 5G8 sing 34 n n C15 H15 5G8 sing 35 n n C13 H16 5G8 sing 36 n n # _atom_sites.entry_id 5DTJ _atom_sites.fract_transf_matrix[1][1] 0.012581 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008821 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004403 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 5G8 A 1 601 602 5G8 134 . D 2 5G8 A 1 602 602 5G8 134 . E 2 5G8 B 1 601 602 5G8 134 . F 2 5G8 B 1 602 602 5G8 134 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 5G8 . . . D 2 5.285 -18.387 7.531 1 64.15 ? C1 5G8 602 A 1 HETATM 2 C C2 5G8 . . . D 2 5.416 -16.993 7.522 1 60.8 ? C2 5G8 602 A 1 HETATM 3 C C3 5G8 . . . D 2 6.492 -16.429 6.851 1 58.68 ? C3 5G8 602 A 1 HETATM 4 C C4 5G8 . . . D 2 7.406 -17.246 6.187 1 58.96 ? C4 5G8 602 A 1 HETATM 5 C C5 5G8 . . . D 2 7.255 -18.634 6.2 1 52.77 ? C5 5G8 602 A 1 HETATM 6 C C6 5G8 . . . D 2 6.183 -19.218 6.871 1 52.11 ? C6 5G8 602 A 1 HETATM 7 C C7 5G8 . . . D 2 4.065 -20.303 8.227 1 56.37 ? C7 5G8 602 A 1 HETATM 8 C C8 5G8 . . . D 2 2.878 -20.518 9.154 1 56.73 ? C8 5G8 602 A 1 HETATM 9 CL CL2 5G8 . . . D 2 4.227 -15.933 8.386 1 73.48 ? CL2 5G8 602 A 1 HETATM 10 CL CL4 5G8 . . . D 2 8.756 -16.528 5.342 1 55.95 ? CL4 5G8 602 A 1 HETATM 11 O O1 5G8 . . . D 2 4.21 -18.879 8.201 1 67.24 ? O1 5G8 602 A 1 HETATM 12 C C9 5G8 . . . D 2 2.538 -21.971 9.398 1 50.26 ? C9 5G8 602 A 1 HETATM 13 C C10 5G8 . . . D 2 1.298 -22.018 10.289 1 46.54 ? C10 5G8 602 A 1 HETATM 14 C C11 5G8 . . . D 2 0.979 -23.474 10.529 1 53.7 ? C11 5G8 602 A 1 HETATM 15 N N12 5G8 . . . D 2 -0.22 -23.654 11.34 1 57.27 ? N12 5G8 602 A 1 HETATM 16 C C16 5G8 . . . D 2 -0.755 -22.824 12.22 1 55.99 ? C16 5G8 602 A 1 HETATM 17 C C15 5G8 . . . D 2 -1.848 -23.425 12.687 1 59.27 ? C15 5G8 602 A 1 HETATM 18 N N14 5G8 . . . D 2 -1.995 -24.609 12.105 1 62.81 ? N14 5G8 602 A 1 HETATM 19 C C13 5G8 . . . D 2 -0.978 -24.746 11.262 1 65.83 ? C13 5G8 602 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 19 #