data_5DUC # _model_server_result.job_id UmS1CqnoIAJ65nS-St7iNA _model_server_result.datetime_utc '2025-07-05 10:27:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5duc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 5DUC # _exptl.entry_id 5DUC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 472.46 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5R,7S)-N-(1,3-benzodioxol-5-ylmethyl)-5-(4-ethylphenyl)-7-(trifluoromethyl)-4,5,6,7-tetrahydropyrazolo[1,5-a]pyrimidine-3-carboxamide _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5DUC _cell.length_a 51.34 _cell.length_b 119.23 _cell.length_c 171.62 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DUC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C24 H23 F3 N4 O3' _chem_comp.formula_weight 472.46 _chem_comp.id G51 _chem_comp.mon_nstd_flag . _chem_comp.name (5R,7S)-N-(1,3-benzodioxol-5-ylmethyl)-5-(4-ethylphenyl)-7-(trifluoromethyl)-4,5,6,7-tetrahydropyrazolo[1,5-a]pyrimidine-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O40 C27 G51 sing 83 n n O40 C41 G51 sing 84 n n C28 C27 G51 doub 85 n y C28 C29 G51 sing 86 n y C27 C26 G51 sing 87 n y C41 O42 G51 sing 88 n n C29 C24 G51 doub 89 n y C26 O42 G51 sing 90 n n C26 C25 G51 doub 91 n y C24 C25 G51 sing 92 n y C24 C23 G51 sing 93 n n C23 N21 G51 sing 94 n n N21 C20 G51 sing 95 n n C20 O22 G51 doub 96 n n C20 C17 G51 sing 97 n n C18 C17 G51 sing 98 n y C18 N19 G51 doub 99 n y C17 C5 G51 doub 100 n y N19 N4 G51 sing 101 n y C5 N4 G51 sing 102 n y C5 N6 G51 sing 103 n n N4 C3 G51 sing 104 n n F57 C13 G51 sing 105 n n N6 C1 G51 sing 106 n n F58 C13 G51 sing 107 n n C13 C3 G51 sing 108 n n C13 F56 G51 sing 109 n n C3 C2 G51 sing 110 n n C1 C2 G51 sing 111 n n C1 C7 G51 sing 112 n n C12 C7 G51 doub 113 n y C12 C11 G51 sing 114 n y C7 C8 G51 sing 115 n y C11 C10 G51 doub 116 n y C8 C9 G51 doub 117 n y C10 C9 G51 sing 118 n y C10 C32 G51 sing 119 n n C33 C32 G51 sing 120 n n N21 H2 G51 sing 121 n n C23 H232 G51 sing 122 n n C23 H231 G51 sing 123 n n C29 H29 G51 sing 124 n n C28 H28 G51 sing 125 n n C41 H412 G51 sing 126 n n C41 H411 G51 sing 127 n n C25 H25 G51 sing 128 n n C18 H18 G51 sing 129 n n C3 H3 G51 sing 130 n n N6 HN6 G51 sing 131 n n C1 H1 G51 sing 132 n n C2 H22 G51 sing 133 n n C2 H21 G51 sing 134 n n C12 H12 G51 sing 135 n n C11 H11 G51 sing 136 n n C32 H322 G51 sing 137 n n C32 H321 G51 sing 138 n n C33 H332 G51 sing 139 n n C33 H331 G51 sing 140 n n C33 H333 G51 sing 141 n n C9 H9 G51 sing 142 n n C8 H8 G51 sing 143 n n # _atom_sites.entry_id 5DUC _atom_sites.fract_transf_matrix[1][1] 0.019478 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008387 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005827 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 G51 A 1 301 303 G51 G51 . E 2 G51 B 1 301 302 G51 G51 . F 2 G51 C 1 301 301 G51 G51 . G 3 HOH A 1 401 16 HOH HOH . G 3 HOH A 2 402 55 HOH HOH . G 3 HOH A 3 403 100 HOH HOH . G 3 HOH A 4 404 4 HOH HOH . G 3 HOH A 5 405 34 HOH HOH . G 3 HOH A 6 406 39 HOH HOH . G 3 HOH A 7 407 28 HOH HOH . G 3 HOH A 8 408 54 HOH HOH . G 3 HOH A 9 409 84 HOH HOH . G 3 HOH A 10 410 67 HOH HOH . G 3 HOH A 11 411 53 HOH HOH . G 3 HOH A 12 412 46 HOH HOH . G 3 HOH A 13 413 44 HOH HOH . G 3 HOH A 14 414 86 HOH HOH . G 3 HOH A 15 415 51 HOH HOH . G 3 HOH A 16 416 48 HOH HOH . G 3 HOH A 17 417 50 HOH HOH . G 3 HOH A 18 418 77 HOH HOH . G 3 HOH A 19 419 102 HOH HOH . G 3 HOH A 20 420 98 HOH HOH . G 3 HOH A 21 421 9 HOH HOH . G 3 HOH A 22 422 101 HOH HOH . G 3 HOH A 23 423 69 HOH HOH . G 3 HOH A 24 424 59 HOH HOH . G 3 HOH A 25 425 99 HOH HOH . G 3 HOH A 26 426 79 HOH HOH . G 3 HOH A 27 427 64 HOH HOH . G 3 HOH A 28 428 76 HOH HOH . G 3 HOH A 29 429 27 HOH HOH . G 3 HOH A 30 430 18 HOH HOH . G 3 HOH A 31 431 61 HOH HOH . G 3 HOH A 32 432 65 HOH HOH . G 3 HOH A 33 433 78 HOH HOH . H 3 HOH B 1 401 103 HOH HOH . H 3 HOH B 2 402 1 HOH HOH . H 3 HOH B 3 403 75 HOH HOH . H 3 HOH B 4 404 107 HOH HOH . H 3 HOH B 5 405 10 HOH HOH . H 3 HOH B 6 406 6 HOH HOH . H 3 HOH B 7 407 2 HOH HOH . H 3 HOH B 8 408 109 HOH HOH . H 3 HOH B 9 409 40 HOH HOH . H 3 HOH B 10 410 37 HOH HOH . H 3 HOH B 11 411 96 HOH HOH . H 3 HOH B 12 412 22 HOH HOH . H 3 HOH B 13 413 11 HOH HOH . H 3 HOH B 14 414 57 HOH HOH . H 3 HOH B 15 415 94 HOH HOH . H 3 HOH B 16 416 52 HOH HOH . H 3 HOH B 17 417 104 HOH HOH . H 3 HOH B 18 418 12 HOH HOH . H 3 HOH B 19 419 60 HOH HOH . H 3 HOH B 20 420 91 HOH HOH . H 3 HOH B 21 421 106 HOH HOH . H 3 HOH B 22 422 68 HOH HOH . H 3 HOH B 23 423 19 HOH HOH . H 3 HOH B 24 424 33 HOH HOH . H 3 HOH B 25 425 108 HOH HOH . H 3 HOH B 26 426 105 HOH HOH . H 3 HOH B 27 427 17 HOH HOH . H 3 HOH B 28 428 88 HOH HOH . H 3 HOH B 29 429 15 HOH HOH . H 3 HOH B 30 430 70 HOH HOH . H 3 HOH B 31 431 66 HOH HOH . H 3 HOH B 32 432 71 HOH HOH . H 3 HOH B 33 433 97 HOH HOH . H 3 HOH B 34 434 38 HOH HOH . H 3 HOH B 35 435 82 HOH HOH . H 3 HOH B 36 436 62 HOH HOH . H 3 HOH B 37 437 21 HOH HOH . H 3 HOH B 38 438 25 HOH HOH . H 3 HOH B 39 439 80 HOH HOH . I 3 HOH C 1 401 49 HOH HOH . I 3 HOH C 2 402 5 HOH HOH . I 3 HOH C 3 403 74 HOH HOH . I 3 HOH C 4 404 14 HOH HOH . I 3 HOH C 5 405 13 HOH HOH . I 3 HOH C 6 406 35 HOH HOH . I 3 HOH C 7 407 43 HOH HOH . I 3 HOH C 8 408 45 HOH HOH . I 3 HOH C 9 409 7 HOH HOH . I 3 HOH C 10 410 92 HOH HOH . I 3 HOH C 11 411 8 HOH HOH . I 3 HOH C 12 412 20 HOH HOH . I 3 HOH C 13 413 26 HOH HOH . I 3 HOH C 14 414 30 HOH HOH . I 3 HOH C 15 415 56 HOH HOH . I 3 HOH C 16 416 41 HOH HOH . I 3 HOH C 17 417 3 HOH HOH . I 3 HOH C 18 418 23 HOH HOH . I 3 HOH C 19 419 85 HOH HOH . I 3 HOH C 20 420 31 HOH HOH . I 3 HOH C 21 421 24 HOH HOH . I 3 HOH C 22 422 89 HOH HOH . I 3 HOH C 23 423 32 HOH HOH . I 3 HOH C 24 424 29 HOH HOH . I 3 HOH C 25 425 87 HOH HOH . I 3 HOH C 26 426 42 HOH HOH . I 3 HOH C 27 427 72 HOH HOH . I 3 HOH C 28 428 73 HOH HOH . I 3 HOH C 29 429 83 HOH HOH . I 3 HOH C 30 430 90 HOH HOH . I 3 HOH C 31 431 63 HOH HOH . I 3 HOH C 32 432 36 HOH HOH . I 3 HOH C 33 433 47 HOH HOH . I 3 HOH C 34 434 81 HOH HOH . I 3 HOH C 35 435 58 HOH HOH . I 3 HOH C 36 436 93 HOH HOH . I 3 HOH C 37 437 95 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O22 G51 . . . E 2 2.764 10.874 -17.341 1 54.83 ? O22 G51 301 B 1 HETATM 2 C C20 G51 . . . E 2 3.199 11.337 -16.29 1 54.83 ? C20 G51 301 B 1 HETATM 3 N N21 G51 . . . E 2 4.452 11.701 -16.119 1 54.83 ? N21 G51 301 B 1 HETATM 4 C C23 G51 . . . E 2 5.522 11.646 -17.08 1 54.83 ? C23 G51 301 B 1 HETATM 5 C C24 G51 . . . E 2 5.881 13.096 -17.277 1 54.83 ? C24 G51 301 B 1 HETATM 6 C C29 G51 . . . E 2 7.212 13.48 -17.515 1 54.83 ? C29 G51 301 B 1 HETATM 7 C C28 G51 . . . E 2 7.539 14.826 -17.699 1 54.83 ? C28 G51 301 B 1 HETATM 8 C C27 G51 . . . E 2 6.51 15.756 -17.626 1 54.83 ? C27 G51 301 B 1 HETATM 9 O O40 G51 . . . E 2 6.57 17.112 -17.783 1 54.83 ? O40 G51 301 B 1 HETATM 10 C C41 G51 . . . E 2 5.214 17.607 -17.815 1 54.83 ? C41 G51 301 B 1 HETATM 11 O O42 G51 . . . E 2 4.413 16.492 -17.391 1 54.83 ? O42 G51 301 B 1 HETATM 12 C C26 G51 . . . E 2 5.216 15.387 -17.387 1 54.83 ? C26 G51 301 B 1 HETATM 13 C C25 G51 . . . E 2 4.864 14.056 -17.205 1 54.83 ? C25 G51 301 B 1 HETATM 14 C C17 G51 . . . E 2 2.329 11.544 -15.106 1 54.83 ? C17 G51 301 B 1 HETATM 15 C C18 G51 . . . E 2 2.517 12.247 -13.909 1 54.83 ? C18 G51 301 B 1 HETATM 16 N N19 G51 . . . E 2 1.385 12.133 -13.14 1 54.83 ? N19 G51 301 B 1 HETATM 17 N N4 G51 . . . E 2 0.461 11.353 -13.866 1 54.83 ? N4 G51 301 B 1 HETATM 18 C C3 G51 . . . E 2 -0.85 11.031 -13.292 1 54.83 ? C3 G51 301 B 1 HETATM 19 C C13 G51 . . . E 2 -0.597 10.64 -11.849 1 54.83 ? C13 G51 301 B 1 HETATM 20 F F57 G51 . . . E 2 -0.02 11.645 -11.202 1 54.83 ? F57 G51 301 B 1 HETATM 21 F F56 G51 . . . E 2 -1.76 10.329 -11.292 1 54.83 ? F56 G51 301 B 1 HETATM 22 F F58 G51 . . . E 2 0.243 9.612 -11.835 1 54.83 ? F58 G51 301 B 1 HETATM 23 C C5 G51 . . . E 2 0.992 10.971 -14.991 1 54.83 ? C5 G51 301 B 1 HETATM 24 N N6 G51 . . . E 2 0.295 10.262 -15.889 1 54.83 ? N6 G51 301 B 1 HETATM 25 C C1 G51 . . . E 2 -1.116 10.056 -15.625 1 54.83 ? C1 G51 301 B 1 HETATM 26 C C2 G51 . . . E 2 -1.417 9.882 -14.129 1 54.83 ? C2 G51 301 B 1 HETATM 27 C C7 G51 . . . E 2 -1.603 8.897 -16.399 1 54.83 ? C7 G51 301 B 1 HETATM 28 C C12 G51 . . . E 2 -0.814 7.774 -16.591 1 54.83 ? C12 G51 301 B 1 HETATM 29 C C11 G51 . . . E 2 -1.309 6.708 -17.321 1 54.83 ? C11 G51 301 B 1 HETATM 30 C C10 G51 . . . E 2 -2.591 6.766 -17.842 1 54.83 ? C10 G51 301 B 1 HETATM 31 C C32 G51 . . . E 2 -3.144 5.613 -18.637 1 54.83 ? C32 G51 301 B 1 HETATM 32 C C33 G51 . . . E 2 -2.089 5.139 -19.607 1 54.83 ? C33 G51 301 B 1 HETATM 33 C C9 G51 . . . E 2 -3.369 7.894 -17.651 1 54.83 ? C9 G51 301 B 1 HETATM 34 C C8 G51 . . . E 2 -2.876 8.957 -16.927 1 54.83 ? C8 G51 301 B 1 HETATM 35 H H232 G51 . . . E 2 6.371 11.082 -16.688 1 27.83 ? H232 G51 301 B 1 HETATM 36 H H231 G51 . . . E 2 5.184 11.195 -18.016 1 27.83 ? H231 G51 301 B 1 HETATM 37 H H29 G51 . . . E 2 7.989 12.727 -17.561 1 27.83 ? H29 G51 301 B 1 HETATM 38 H H28 G51 . . . E 2 8.56 15.134 -17.886 1 27.83 ? H28 G51 301 B 1 HETATM 39 H H412 G51 . . . E 2 5.094 18.451 -17.133 1 27.83 ? H412 G51 301 B 1 HETATM 40 H H411 G51 . . . E 2 4.939 17.918 -18.825 1 27.83 ? H411 G51 301 B 1 HETATM 41 H H25 G51 . . . E 2 3.835 13.769 -17.026 1 27.83 ? H25 G51 301 B 1 HETATM 42 H H18 G51 . . . E 2 3.412 12.79 -13.634 1 27.83 ? H18 G51 301 B 1 HETATM 43 H H3 G51 . . . E 2 -1.524 11.898 -13.336 1 27.83 ? H3 G51 301 B 1 HETATM 44 H HN6 G51 . . . E 2 0.699 9.952 -16.76 1 27.83 ? HN6 G51 301 B 1 HETATM 45 H H1 G51 . . . E 2 -1.652 10.953 -15.965 1 27.83 ? H1 G51 301 B 1 HETATM 46 H H22 G51 . . . E 2 -0.988 8.939 -13.783 1 27.83 ? H22 G51 301 B 1 HETATM 47 H H21 G51 . . . E 2 -2.498 9.829 -13.983 1 27.83 ? H21 G51 301 B 1 HETATM 48 H H12 G51 . . . E 2 0.185 7.733 -16.174 1 27.83 ? H12 G51 301 B 1 HETATM 49 H H11 G51 . . . E 2 -0.7 5.825 -17.473 1 27.83 ? H11 G51 301 B 1 HETATM 50 H H322 G51 . . . E 2 -4.034 5.931 -19.183 1 27.83 ? H322 G51 301 B 1 HETATM 51 H H321 G51 . . . E 2 -3.424 4.799 -17.966 1 27.83 ? H321 G51 301 B 1 HETATM 52 H H332 G51 . . . E 2 -1.827 5.931 -20.259 1 27.83 ? H332 G51 301 B 1 HETATM 53 H H331 G51 . . . E 2 -1.231 4.826 -19.07 1 27.83 ? H331 G51 301 B 1 HETATM 54 H H333 G51 . . . E 2 -2.468 4.327 -20.171 1 27.83 ? H333 G51 301 B 1 HETATM 55 H H9 G51 . . . E 2 -4.369 7.937 -18.063 1 27.83 ? H9 G51 301 B 1 HETATM 56 H H8 G51 . . . E 2 -3.488 9.838 -16.77 1 27.83 ? H8 G51 301 B 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 56 #