data_5DUE # _model_server_result.job_id EaW4QlLrpfiGe387MniWcg _model_server_result.datetime_utc '2025-02-17 15:09:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5due # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":900}' # _entry.id 5DUE # _exptl.entry_id 5DUE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 512.595 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-hydroxyphenyl (1S,2S,4S,7S)-5,6-bis(4-hydroxy-2-methylphenyl)-7-thiabicyclo[2.2.1]hept-5-ene-2-sulfonate 7-oxide' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.56 _cell.angle_gamma 90 _cell.entry_id 5DUE _cell.length_a 55.416 _cell.length_b 82.7 _cell.length_c 58.863 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DUE _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C26 H24 O7 S2' _chem_comp.formula_weight 512.595 _chem_comp.id 5FY _chem_comp.mon_nstd_flag . _chem_comp.name '4-hydroxyphenyl (1S,2S,4S,7S)-5,6-bis(4-hydroxy-2-methylphenyl)-7-thiabicyclo[2.2.1]hept-5-ene-2-sulfonate 7-oxide' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C25 C26 5FY doub 1 n y C25 C24 5FY sing 2 n y C26 C21 5FY sing 3 n y O07 C24 5FY sing 4 n n C24 C23 5FY doub 5 n y C21 O06 5FY sing 6 n n C21 C22 5FY doub 7 n y O06 S02 5FY sing 8 n n C23 C22 5FY sing 9 n y O04 S02 5FY doub 10 n n S02 O05 5FY doub 11 n n S02 C20 5FY sing 12 n n C20 C19 5FY sing 13 n n C20 C17 5FY sing 14 n n C19 C18 5FY sing 15 n n C17 C09 5FY sing 16 n n C17 S01 5FY sing 17 n n O03 S01 5FY doub 18 n n C09 C10 5FY sing 19 n n C09 C08 5FY doub 20 n n C16 C15 5FY sing 21 n n S01 C18 5FY sing 22 n n C10 C15 5FY doub 23 n y C10 C11 5FY sing 24 n y C15 C14 5FY sing 25 n y C11 C12 5FY doub 26 n y C18 C08 5FY sing 27 n n C14 C13 5FY doub 28 n y C12 C13 5FY sing 29 n y C13 O02 5FY sing 30 n n C08 C07 5FY sing 31 n n C01 C02 5FY sing 32 n n C07 C02 5FY doub 33 n y C07 C06 5FY sing 34 n y C02 C03 5FY sing 35 n y C06 C05 5FY doub 36 n y C03 C04 5FY doub 37 n y C05 C04 5FY sing 38 n y C04 O01 5FY sing 39 n n C01 H1 5FY sing 40 n n C01 H2 5FY sing 41 n n C01 H3 5FY sing 42 n n C03 H4 5FY sing 43 n n O01 H5 5FY sing 44 n n C05 H6 5FY sing 45 n n C06 H7 5FY sing 46 n n C11 H10 5FY sing 47 n n C12 H11 5FY sing 48 n n O02 H12 5FY sing 49 n n C14 H13 5FY sing 50 n n C16 H14 5FY sing 51 n n C16 H15 5FY sing 52 n n C16 H16 5FY sing 53 n n C17 H17 5FY sing 54 n n C18 H19 5FY sing 55 n n C19 H20 5FY sing 56 n n C19 H21 5FY sing 57 n n C20 H22 5FY sing 58 n n C22 H23 5FY sing 59 n n C23 H24 5FY sing 60 n n O07 H25 5FY sing 61 n n C25 H26 5FY sing 62 n n C26 H27 5FY sing 63 n n # _atom_sites.entry_id 5DUE _atom_sites.fract_transf_matrix[1][1] 0.018045 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006768 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012092 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018144 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 5FY A 1 900 900 5FY UNK . F 3 5FY B 1 901 901 5FY UNK . G 4 HOH A 1 1001 61 HOH HOH . G 4 HOH A 2 1002 50 HOH HOH . G 4 HOH A 3 1003 56 HOH HOH . G 4 HOH A 4 1004 15 HOH HOH . G 4 HOH A 5 1005 75 HOH HOH . G 4 HOH A 6 1006 44 HOH HOH . G 4 HOH A 7 1007 51 HOH HOH . G 4 HOH A 8 1008 66 HOH HOH . G 4 HOH A 9 1009 42 HOH HOH . G 4 HOH A 10 1010 34 HOH HOH . G 4 HOH A 11 1011 10 HOH HOH . G 4 HOH A 12 1012 31 HOH HOH . G 4 HOH A 13 1013 35 HOH HOH . G 4 HOH A 14 1014 69 HOH HOH . G 4 HOH A 15 1015 16 HOH HOH . G 4 HOH A 16 1016 12 HOH HOH . G 4 HOH A 17 1017 25 HOH HOH . G 4 HOH A 18 1018 27 HOH HOH . G 4 HOH A 19 1019 36 HOH HOH . G 4 HOH A 20 1020 8 HOH HOH . G 4 HOH A 21 1021 14 HOH HOH . G 4 HOH A 22 1022 74 HOH HOH . G 4 HOH A 23 1023 17 HOH HOH . G 4 HOH A 24 1024 3 HOH HOH . G 4 HOH A 25 1025 73 HOH HOH . G 4 HOH A 26 1026 6 HOH HOH . G 4 HOH A 27 1027 24 HOH HOH . G 4 HOH A 28 1028 29 HOH HOH . G 4 HOH A 29 1029 38 HOH HOH . G 4 HOH A 30 1030 60 HOH HOH . G 4 HOH A 31 1031 65 HOH HOH . G 4 HOH A 32 1032 11 HOH HOH . G 4 HOH A 33 1033 64 HOH HOH . G 4 HOH A 34 1034 49 HOH HOH . G 4 HOH A 35 1035 53 HOH HOH . G 4 HOH A 36 1036 52 HOH HOH . G 4 HOH A 37 1037 1 HOH HOH . G 4 HOH A 38 1038 62 HOH HOH . G 4 HOH A 39 1039 30 HOH HOH . G 4 HOH A 40 1040 18 HOH HOH . H 4 HOH B 1 1001 76 HOH HOH . H 4 HOH B 2 1002 37 HOH HOH . H 4 HOH B 3 1003 32 HOH HOH . H 4 HOH B 4 1004 70 HOH HOH . H 4 HOH B 5 1005 47 HOH HOH . H 4 HOH B 6 1006 54 HOH HOH . H 4 HOH B 7 1007 19 HOH HOH . H 4 HOH B 8 1008 7 HOH HOH . H 4 HOH B 9 1009 2 HOH HOH . H 4 HOH B 10 1010 63 HOH HOH . H 4 HOH B 11 1011 26 HOH HOH . H 4 HOH B 12 1012 9 HOH HOH . H 4 HOH B 13 1013 20 HOH HOH . H 4 HOH B 14 1014 41 HOH HOH . H 4 HOH B 15 1015 40 HOH HOH . H 4 HOH B 16 1016 43 HOH HOH . H 4 HOH B 17 1017 4 HOH HOH . H 4 HOH B 18 1018 46 HOH HOH . H 4 HOH B 19 1019 5 HOH HOH . H 4 HOH B 20 1020 21 HOH HOH . H 4 HOH B 21 1021 71 HOH HOH . H 4 HOH B 22 1022 58 HOH HOH . H 4 HOH B 23 1023 13 HOH HOH . H 4 HOH B 24 1024 68 HOH HOH . H 4 HOH B 25 1025 55 HOH HOH . H 4 HOH B 26 1026 28 HOH HOH . H 4 HOH B 27 1027 48 HOH HOH . H 4 HOH B 28 1028 72 HOH HOH . H 4 HOH B 29 1029 59 HOH HOH . H 4 HOH B 30 1030 22 HOH HOH . H 4 HOH B 31 1031 33 HOH HOH . H 4 HOH B 32 1032 23 HOH HOH . H 4 HOH B 33 1033 39 HOH HOH . H 4 HOH B 34 1034 57 HOH HOH . H 4 HOH B 35 1035 45 HOH HOH . I 4 HOH C 1 701 67 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 5FY . . . E 3 -15.96 -25.994 -4.023 0.81 47.45 ? C01 5FY 900 A 1 HETATM 2 C C02 5FY . . . E 3 -17.059 -26.346 -3.231 0.81 48.46 ? C02 5FY 900 A 1 HETATM 3 C C03 5FY . . . E 3 -17.109 -25.744 -1.956 0.81 51.17 ? C03 5FY 900 A 1 HETATM 4 C C04 5FY . . . E 3 -18.173 -26.043 -1.098 0.81 51.49 ? C04 5FY 900 A 1 HETATM 5 O O01 5FY . . . E 3 -18.218 -25.458 0.128 0.81 54.31 ? O01 5FY 900 A 1 HETATM 6 C C05 5FY . . . E 3 -19.199 -26.941 -1.478 0.81 51.9 ? C05 5FY 900 A 1 HETATM 7 C C06 5FY . . . E 3 -19.156 -27.547 -2.736 0.81 50.56 ? C06 5FY 900 A 1 HETATM 8 C C07 5FY . . . E 3 -18.091 -27.262 -3.632 0.81 49.9 ? C07 5FY 900 A 1 HETATM 9 C C08 5FY . . . E 3 -18.117 -27.887 -4.839 0.81 48.41 ? C08 5FY 900 A 1 HETATM 10 C C09 5FY . . . E 3 -19.256 -28.1 -5.567 0.81 46.91 ? C09 5FY 900 A 1 HETATM 11 C C10 5FY . . . E 3 -20.46 -27.489 -5.395 0.81 47.52 ? C10 5FY 900 A 1 HETATM 12 C C11 5FY . . . E 3 -21.585 -28.342 -5.263 0.81 47.77 ? C11 5FY 900 A 1 HETATM 13 C C12 5FY . . . E 3 -22.874 -27.804 -5.083 0.81 45.24 ? C12 5FY 900 A 1 HETATM 14 C C13 5FY . . . E 3 -23.049 -26.412 -5.033 0.81 44.04 ? C13 5FY 900 A 1 HETATM 15 O O02 5FY . . . E 3 -24.295 -25.915 -4.863 0.81 44.72 ? O02 5FY 900 A 1 HETATM 16 C C14 5FY . . . E 3 -21.956 -25.537 -5.155 0.81 43.23 ? C14 5FY 900 A 1 HETATM 17 C C15 5FY . . . E 3 -20.661 -26.078 -5.335 0.81 46.89 ? C15 5FY 900 A 1 HETATM 18 C C16 5FY . . . E 3 -19.64 -25.115 -5.451 0.81 49.81 ? C16 5FY 900 A 1 HETATM 19 C C17 5FY . . . E 3 -19.111 -29.136 -6.432 0.81 47.52 ? C17 5FY 900 A 1 HETATM 20 S S01 5FY . . . E 3 -18.05 -30.373 -5.401 0.81 60.4 ? S01 5FY 900 A 1 HETATM 21 O O03 5FY . . . E 3 -17.268 -31.281 -6.345 0.81 64.73 ? O03 5FY 900 A 1 HETATM 22 C C18 5FY . . . E 3 -17.099 -28.693 -5.239 0.81 48.72 ? C18 5FY 900 A 1 HETATM 23 C C19 5FY . . . E 3 -16.755 -28.476 -6.723 0.81 47.73 ? C19 5FY 900 A 1 HETATM 24 C C20 5FY . . . E 3 -18.047 -28.834 -7.493 0.81 46.86 ? C20 5FY 900 A 1 HETATM 25 S S02 5FY . . . E 3 -18.577 -27.485 -8.787 0.81 57.74 ? S02 5FY 900 A 1 HETATM 26 O O04 5FY . . . E 3 -17.413 -26.511 -8.96 0.81 62.28 ? O04 5FY 900 A 1 HETATM 27 O O05 5FY . . . E 3 -19.784 -26.733 -8.249 0.81 64.31 ? O05 5FY 900 A 1 HETATM 28 O O06 5FY . . . E 3 -18.943 -28.157 -10.122 0.81 63.03 ? O06 5FY 900 A 1 HETATM 29 C C21 5FY . . . E 3 -19.972 -29.062 -10.135 0.81 63.03 ? C21 5FY 900 A 1 HETATM 30 C C22 5FY . . . E 3 -21.28 -28.635 -9.82 0.81 60.55 ? C22 5FY 900 A 1 HETATM 31 C C23 5FY . . . E 3 -22.337 -29.571 -9.852 0.81 61.42 ? C23 5FY 900 A 1 HETATM 32 C C24 5FY . . . E 3 -22.059 -30.897 -10.203 0.81 62.77 ? C24 5FY 900 A 1 HETATM 33 O O07 5FY . . . E 3 -23.083 -31.795 -10.232 0.81 67.66 ? O07 5FY 900 A 1 HETATM 34 C C25 5FY . . . E 3 -20.757 -31.336 -10.527 0.81 61.34 ? C25 5FY 900 A 1 HETATM 35 C C26 5FY . . . E 3 -19.7 -30.402 -10.494 0.81 63.35 ? C26 5FY 900 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #