data_5DUE # _model_server_result.job_id pbkMmdZd-4F1HFSlMYXr_A _model_server_result.datetime_utc '2024-10-12 16:36:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5due # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":901}' # _entry.id 5DUE # _exptl.entry_id 5DUE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 512.595 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-hydroxyphenyl (1S,2S,4S,7S)-5,6-bis(4-hydroxy-2-methylphenyl)-7-thiabicyclo[2.2.1]hept-5-ene-2-sulfonate 7-oxide' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.56 _cell.angle_gamma 90 _cell.entry_id 5DUE _cell.length_a 55.416 _cell.length_b 82.7 _cell.length_c 58.863 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DUE _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C26 H24 O7 S2' _chem_comp.formula_weight 512.595 _chem_comp.id 5FY _chem_comp.mon_nstd_flag . _chem_comp.name '4-hydroxyphenyl (1S,2S,4S,7S)-5,6-bis(4-hydroxy-2-methylphenyl)-7-thiabicyclo[2.2.1]hept-5-ene-2-sulfonate 7-oxide' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C25 C26 5FY doub 1 n y C25 C24 5FY sing 2 n y C26 C21 5FY sing 3 n y O07 C24 5FY sing 4 n n C24 C23 5FY doub 5 n y C21 O06 5FY sing 6 n n C21 C22 5FY doub 7 n y O06 S02 5FY sing 8 n n C23 C22 5FY sing 9 n y O04 S02 5FY doub 10 n n S02 O05 5FY doub 11 n n S02 C20 5FY sing 12 n n C20 C19 5FY sing 13 n n C20 C17 5FY sing 14 n n C19 C18 5FY sing 15 n n C17 C09 5FY sing 16 n n C17 S01 5FY sing 17 n n O03 S01 5FY doub 18 n n C09 C10 5FY sing 19 n n C09 C08 5FY doub 20 n n C16 C15 5FY sing 21 n n S01 C18 5FY sing 22 n n C10 C15 5FY doub 23 n y C10 C11 5FY sing 24 n y C15 C14 5FY sing 25 n y C11 C12 5FY doub 26 n y C18 C08 5FY sing 27 n n C14 C13 5FY doub 28 n y C12 C13 5FY sing 29 n y C13 O02 5FY sing 30 n n C08 C07 5FY sing 31 n n C01 C02 5FY sing 32 n n C07 C02 5FY doub 33 n y C07 C06 5FY sing 34 n y C02 C03 5FY sing 35 n y C06 C05 5FY doub 36 n y C03 C04 5FY doub 37 n y C05 C04 5FY sing 38 n y C04 O01 5FY sing 39 n n C01 H1 5FY sing 40 n n C01 H2 5FY sing 41 n n C01 H3 5FY sing 42 n n C03 H4 5FY sing 43 n n O01 H5 5FY sing 44 n n C05 H6 5FY sing 45 n n C06 H7 5FY sing 46 n n C11 H10 5FY sing 47 n n C12 H11 5FY sing 48 n n O02 H12 5FY sing 49 n n C14 H13 5FY sing 50 n n C16 H14 5FY sing 51 n n C16 H15 5FY sing 52 n n C16 H16 5FY sing 53 n n C17 H17 5FY sing 54 n n C18 H19 5FY sing 55 n n C19 H20 5FY sing 56 n n C19 H21 5FY sing 57 n n C20 H22 5FY sing 58 n n C22 H23 5FY sing 59 n n C23 H24 5FY sing 60 n n O07 H25 5FY sing 61 n n C25 H26 5FY sing 62 n n C26 H27 5FY sing 63 n n # _atom_sites.entry_id 5DUE _atom_sites.fract_transf_matrix[1][1] 0.018045 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006768 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012092 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018144 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 5FY A 1 900 900 5FY UNK . F 3 5FY B 1 901 901 5FY UNK . G 4 HOH A 1 1001 61 HOH HOH . G 4 HOH A 2 1002 50 HOH HOH . G 4 HOH A 3 1003 56 HOH HOH . G 4 HOH A 4 1004 15 HOH HOH . G 4 HOH A 5 1005 75 HOH HOH . G 4 HOH A 6 1006 44 HOH HOH . G 4 HOH A 7 1007 51 HOH HOH . G 4 HOH A 8 1008 66 HOH HOH . G 4 HOH A 9 1009 42 HOH HOH . G 4 HOH A 10 1010 34 HOH HOH . G 4 HOH A 11 1011 10 HOH HOH . G 4 HOH A 12 1012 31 HOH HOH . G 4 HOH A 13 1013 35 HOH HOH . G 4 HOH A 14 1014 69 HOH HOH . G 4 HOH A 15 1015 16 HOH HOH . G 4 HOH A 16 1016 12 HOH HOH . G 4 HOH A 17 1017 25 HOH HOH . G 4 HOH A 18 1018 27 HOH HOH . G 4 HOH A 19 1019 36 HOH HOH . G 4 HOH A 20 1020 8 HOH HOH . G 4 HOH A 21 1021 14 HOH HOH . G 4 HOH A 22 1022 74 HOH HOH . G 4 HOH A 23 1023 17 HOH HOH . G 4 HOH A 24 1024 3 HOH HOH . G 4 HOH A 25 1025 73 HOH HOH . G 4 HOH A 26 1026 6 HOH HOH . G 4 HOH A 27 1027 24 HOH HOH . G 4 HOH A 28 1028 29 HOH HOH . G 4 HOH A 29 1029 38 HOH HOH . G 4 HOH A 30 1030 60 HOH HOH . G 4 HOH A 31 1031 65 HOH HOH . G 4 HOH A 32 1032 11 HOH HOH . G 4 HOH A 33 1033 64 HOH HOH . G 4 HOH A 34 1034 49 HOH HOH . G 4 HOH A 35 1035 53 HOH HOH . G 4 HOH A 36 1036 52 HOH HOH . G 4 HOH A 37 1037 1 HOH HOH . G 4 HOH A 38 1038 62 HOH HOH . G 4 HOH A 39 1039 30 HOH HOH . G 4 HOH A 40 1040 18 HOH HOH . H 4 HOH B 1 1001 76 HOH HOH . H 4 HOH B 2 1002 37 HOH HOH . H 4 HOH B 3 1003 32 HOH HOH . H 4 HOH B 4 1004 70 HOH HOH . H 4 HOH B 5 1005 47 HOH HOH . H 4 HOH B 6 1006 54 HOH HOH . H 4 HOH B 7 1007 19 HOH HOH . H 4 HOH B 8 1008 7 HOH HOH . H 4 HOH B 9 1009 2 HOH HOH . H 4 HOH B 10 1010 63 HOH HOH . H 4 HOH B 11 1011 26 HOH HOH . H 4 HOH B 12 1012 9 HOH HOH . H 4 HOH B 13 1013 20 HOH HOH . H 4 HOH B 14 1014 41 HOH HOH . H 4 HOH B 15 1015 40 HOH HOH . H 4 HOH B 16 1016 43 HOH HOH . H 4 HOH B 17 1017 4 HOH HOH . H 4 HOH B 18 1018 46 HOH HOH . H 4 HOH B 19 1019 5 HOH HOH . H 4 HOH B 20 1020 21 HOH HOH . H 4 HOH B 21 1021 71 HOH HOH . H 4 HOH B 22 1022 58 HOH HOH . H 4 HOH B 23 1023 13 HOH HOH . H 4 HOH B 24 1024 68 HOH HOH . H 4 HOH B 25 1025 55 HOH HOH . H 4 HOH B 26 1026 28 HOH HOH . H 4 HOH B 27 1027 48 HOH HOH . H 4 HOH B 28 1028 72 HOH HOH . H 4 HOH B 29 1029 59 HOH HOH . H 4 HOH B 30 1030 22 HOH HOH . H 4 HOH B 31 1031 33 HOH HOH . H 4 HOH B 32 1032 23 HOH HOH . H 4 HOH B 33 1033 39 HOH HOH . H 4 HOH B 34 1034 57 HOH HOH . H 4 HOH B 35 1035 45 HOH HOH . I 4 HOH C 1 701 67 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 5FY . . . F 3 -8.634 -17.561 -31.778 0.81 62.87 ? C01 5FY 901 B 1 HETATM 2 C C02 5FY . . . F 3 -8.905 -17.822 -33.128 0.81 58.1 ? C02 5FY 901 B 1 HETATM 3 C C03 5FY . . . F 3 -7.767 -18.067 -33.921 0.81 56.86 ? C03 5FY 901 B 1 HETATM 4 C C04 5FY . . . F 3 -7.919 -18.336 -35.283 0.81 57.55 ? C04 5FY 901 B 1 HETATM 5 O O01 5FY . . . F 3 -6.818 -18.575 -36.044 0.81 61.63 ? O01 5FY 901 B 1 HETATM 6 C C05 5FY . . . F 3 -9.195 -18.364 -35.889 0.81 58.17 ? C05 5FY 901 B 1 HETATM 7 C C06 5FY . . . F 3 -10.331 -18.117 -35.116 0.81 60.08 ? C06 5FY 901 B 1 HETATM 8 C C07 5FY . . . F 3 -10.214 -17.841 -33.725 0.81 56.82 ? C07 5FY 901 B 1 HETATM 9 C C08 5FY . . . F 3 -11.371 -17.615 -33.042 0.81 51.6 ? C08 5FY 901 B 1 HETATM 10 C C09 5FY . . . F 3 -12.572 -18.204 -33.336 0.81 49.3 ? C09 5FY 901 B 1 HETATM 11 C C10 5FY . . . F 3 -12.777 -19.366 -34.014 0.81 48.14 ? C10 5FY 901 B 1 HETATM 12 C C11 5FY . . . F 3 -13.734 -19.324 -35.057 0.81 47.17 ? C11 5FY 901 B 1 HETATM 13 C C12 5FY . . . F 3 -14.02 -20.479 -35.81 0.81 49.74 ? C12 5FY 901 B 1 HETATM 14 C C13 5FY . . . F 3 -13.353 -21.683 -35.529 0.81 47.72 ? C13 5FY 901 B 1 HETATM 15 O O02 5FY . . . F 3 -13.643 -22.781 -36.263 0.81 49.89 ? O02 5FY 901 B 1 HETATM 16 C C14 5FY . . . F 3 -12.399 -21.761 -34.503 0.81 46.15 ? C14 5FY 901 B 1 HETATM 17 C C15 5FY . . . F 3 -12.112 -20.599 -33.746 0.81 50.12 ? C15 5FY 901 B 1 HETATM 18 C C16 5FY . . . F 3 -11.145 -20.779 -32.738 0.81 52.91 ? C16 5FY 901 B 1 HETATM 19 C C17 5FY . . . F 3 -13.617 -17.48 -32.859 0.81 53.32 ? C17 5FY 901 B 1 HETATM 20 S S01 5FY . . . F 3 -13.007 -15.675 -33.162 0.81 54.15 ? S01 5FY 901 B 1 HETATM 21 O O03 5FY . . . F 3 -13.692 -14.717 -32.187 0.81 53.22 ? O03 5FY 901 B 1 HETATM 22 C C18 5FY . . . F 3 -11.527 -16.524 -32.248 0.81 53.58 ? C18 5FY 901 B 1 HETATM 23 C C19 5FY . . . F 3 -12.229 -16.878 -30.92 0.81 56.18 ? C19 5FY 901 B 1 HETATM 24 C C20 5FY . . . F 3 -13.616 -17.429 -31.325 0.81 56.32 ? C20 5FY 901 B 1 HETATM 25 S S02 5FY . . . F 3 -14.071 -19.115 -30.472 0.81 77.98 ? S02 5FY 901 B 1 HETATM 26 O O04 5FY . . . F 3 -12.936 -19.487 -29.518 0.81 77.33 ? O04 5FY 901 B 1 HETATM 27 O O05 5FY . . . F 3 -14.188 -20.181 -31.551 0.81 80.6 ? O05 5FY 901 B 1 HETATM 28 O O06 5FY . . . F 3 -15.41 -19.001 -29.714 0.81 83.99 ? O06 5FY 901 B 1 HETATM 29 C C21 5FY . . . F 3 -16.571 -18.878 -30.434 0.81 85.19 ? C21 5FY 901 B 1 HETATM 30 C C22 5FY . . . F 3 -16.955 -19.905 -31.323 0.81 86.22 ? C22 5FY 901 B 1 HETATM 31 C C23 5FY . . . F 3 -18.157 -19.78 -32.051 0.81 86.59 ? C23 5FY 901 B 1 HETATM 32 C C24 5FY . . . F 3 -18.947 -18.639 -31.864 0.81 86.45 ? C24 5FY 901 B 1 HETATM 33 O O07 5FY . . . F 3 -20.109 -18.516 -32.564 0.81 88.33 ? O07 5FY 901 B 1 HETATM 34 C C25 5FY . . . F 3 -18.578 -17.609 -30.973 0.81 85.31 ? C25 5FY 901 B 1 HETATM 35 C C26 5FY . . . F 3 -17.376 -17.733 -30.247 0.81 84.89 ? C26 5FY 901 B 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 35 #