data_5DUG # _model_server_result.job_id -0HlJzGdG0scbjx45vfyaQ _model_server_result.datetime_utc '2024-11-25 13:17:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dug # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":900}' # _entry.id 5DUG # _exptl.entry_id 5DUG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 496.595 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'phenyl (1S,2S,4S,7S)-5,6-bis(4-hydroxy-2-methylphenyl)-7-thiabicyclo[2.2.1]hept-5-ene-2-sulfonate 7-oxide' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.87 _cell.angle_gamma 90 _cell.entry_id 5DUG _cell.length_a 54.14 _cell.length_b 82.146 _cell.length_c 58.354 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DUG _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C26 H24 O6 S2' _chem_comp.formula_weight 496.595 _chem_comp.id 5FV _chem_comp.mon_nstd_flag . _chem_comp.name 'phenyl (1S,2S,4S,7S)-5,6-bis(4-hydroxy-2-methylphenyl)-7-thiabicyclo[2.2.1]hept-5-ene-2-sulfonate 7-oxide' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C26 C05 5FV sing 1 n n C05 C06 5FV doub 2 n y C05 C04 5FV sing 3 n y C06 C01 5FV sing 4 n y C01 O01 5FV sing 5 n n C01 C02 5FV doub 6 n y C02 C03 5FV sing 7 n y C03 C04 5FV doub 8 n y C04 C07 5FV sing 9 n n C07 C08 5FV doub 10 n n C07 C16 5FV sing 11 n n C08 C10 5FV sing 12 n n C08 C09 5FV sing 13 n n C10 C11 5FV doub 14 n y C10 C15 5FV sing 15 n y C11 C12 5FV sing 16 n y C12 C13 5FV doub 17 n y C13 O02 5FV sing 18 n n C13 C14 5FV sing 19 n y C14 C15 5FV doub 20 n y C15 C25 5FV sing 21 n n C09 S02 5FV sing 22 n n C09 C18 5FV sing 23 n n S02 O06 5FV doub 24 n n S02 C16 5FV sing 25 n n C16 C17 5FV sing 26 n n C17 C18 5FV sing 27 n n C18 S01 5FV sing 28 n n S01 O04 5FV doub 29 n n S01 O05 5FV doub 30 n n S01 O03 5FV sing 31 n n O03 C19 5FV sing 32 n n C19 C20 5FV sing 33 n y C19 C24 5FV doub 34 n y C20 C21 5FV doub 35 n y C21 C22 5FV sing 36 n y C22 C23 5FV doub 37 n y C23 C24 5FV sing 38 n y C26 H1 5FV sing 39 n n C26 H2 5FV sing 40 n n C26 H3 5FV sing 41 n n C06 H4 5FV sing 42 n n O01 H5 5FV sing 43 n n C02 H6 5FV sing 44 n n C03 H7 5FV sing 45 n n C11 H8 5FV sing 46 n n C12 H9 5FV sing 47 n n O02 H10 5FV sing 48 n n C14 H11 5FV sing 49 n n C25 H12 5FV sing 50 n n C25 H13 5FV sing 51 n n C25 H14 5FV sing 52 n n C09 H15 5FV sing 53 n n C16 H17 5FV sing 54 n n C17 H18 5FV sing 55 n n C17 H19 5FV sing 56 n n C18 H20 5FV sing 57 n n C20 H23 5FV sing 58 n n C21 H24 5FV sing 59 n n C22 H25 5FV sing 60 n n C23 H26 5FV sing 61 n n C24 H27 5FV sing 62 n n # _atom_sites.entry_id 5DUG _atom_sites.fract_transf_matrix[1][1] 0.018471 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007042 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012173 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01834 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 5FV A 1 900 900 5FV UNK . F 3 5FV B 1 901 901 5FV UNK . G 4 HOH A 1 1001 35 HOH HOH . G 4 HOH A 2 1002 63 HOH HOH . G 4 HOH A 3 1003 125 HOH HOH . G 4 HOH A 4 1004 128 HOH HOH . G 4 HOH A 5 1005 94 HOH HOH . G 4 HOH A 6 1006 34 HOH HOH . G 4 HOH A 7 1007 62 HOH HOH . G 4 HOH A 8 1008 37 HOH HOH . G 4 HOH A 9 1009 138 HOH HOH . G 4 HOH A 10 1010 84 HOH HOH . G 4 HOH A 11 1011 10 HOH HOH . G 4 HOH A 12 1012 113 HOH HOH . G 4 HOH A 13 1013 76 HOH HOH . G 4 HOH A 14 1014 50 HOH HOH . G 4 HOH A 15 1015 69 HOH HOH . G 4 HOH A 16 1016 58 HOH HOH . G 4 HOH A 17 1017 17 HOH HOH . G 4 HOH A 18 1018 26 HOH HOH . G 4 HOH A 19 1019 109 HOH HOH . G 4 HOH A 20 1020 3 HOH HOH . G 4 HOH A 21 1021 82 HOH HOH . G 4 HOH A 22 1022 16 HOH HOH . G 4 HOH A 23 1023 11 HOH HOH . G 4 HOH A 24 1024 44 HOH HOH . G 4 HOH A 25 1025 1 HOH HOH . G 4 HOH A 26 1026 25 HOH HOH . G 4 HOH A 27 1027 8 HOH HOH . G 4 HOH A 28 1028 45 HOH HOH . G 4 HOH A 29 1029 101 HOH HOH . G 4 HOH A 30 1030 90 HOH HOH . G 4 HOH A 31 1031 41 HOH HOH . G 4 HOH A 32 1032 5 HOH HOH . G 4 HOH A 33 1033 13 HOH HOH . G 4 HOH A 34 1034 51 HOH HOH . G 4 HOH A 35 1035 99 HOH HOH . G 4 HOH A 36 1036 104 HOH HOH . G 4 HOH A 37 1037 12 HOH HOH . G 4 HOH A 38 1038 15 HOH HOH . G 4 HOH A 39 1039 30 HOH HOH . G 4 HOH A 40 1040 105 HOH HOH . G 4 HOH A 41 1041 119 HOH HOH . G 4 HOH A 42 1042 75 HOH HOH . G 4 HOH A 43 1043 47 HOH HOH . G 4 HOH A 44 1044 39 HOH HOH . G 4 HOH A 45 1045 85 HOH HOH . G 4 HOH A 46 1046 89 HOH HOH . G 4 HOH A 47 1047 86 HOH HOH . G 4 HOH A 48 1048 54 HOH HOH . G 4 HOH A 49 1049 102 HOH HOH . G 4 HOH A 50 1050 71 HOH HOH . G 4 HOH A 51 1051 42 HOH HOH . G 4 HOH A 52 1052 64 HOH HOH . G 4 HOH A 53 1053 81 HOH HOH . G 4 HOH A 54 1054 132 HOH HOH . G 4 HOH A 55 1055 57 HOH HOH . G 4 HOH A 56 1056 103 HOH HOH . G 4 HOH A 57 1057 126 HOH HOH . G 4 HOH A 58 1058 60 HOH HOH . G 4 HOH A 59 1059 29 HOH HOH . G 4 HOH A 60 1060 72 HOH HOH . G 4 HOH A 61 1061 121 HOH HOH . G 4 HOH A 62 1062 114 HOH HOH . G 4 HOH A 63 1063 130 HOH HOH . G 4 HOH A 64 1064 65 HOH HOH . G 4 HOH A 65 1065 53 HOH HOH . G 4 HOH A 66 1066 100 HOH HOH . G 4 HOH A 67 1067 124 HOH HOH . G 4 HOH A 68 1068 117 HOH HOH . G 4 HOH A 69 1069 118 HOH HOH . G 4 HOH A 70 1070 111 HOH HOH . G 4 HOH A 71 1071 96 HOH HOH . G 4 HOH A 72 1072 131 HOH HOH . G 4 HOH A 73 1073 95 HOH HOH . G 4 HOH A 74 1074 49 HOH HOH . G 4 HOH A 75 1075 120 HOH HOH . H 4 HOH B 1 1001 136 HOH HOH . H 4 HOH B 2 1002 19 HOH HOH . H 4 HOH B 3 1003 108 HOH HOH . H 4 HOH B 4 1004 40 HOH HOH . H 4 HOH B 5 1005 115 HOH HOH . H 4 HOH B 6 1006 88 HOH HOH . H 4 HOH B 7 1007 20 HOH HOH . H 4 HOH B 8 1008 80 HOH HOH . H 4 HOH B 9 1009 23 HOH HOH . H 4 HOH B 10 1010 33 HOH HOH . H 4 HOH B 11 1011 110 HOH HOH . H 4 HOH B 12 1012 6 HOH HOH . H 4 HOH B 13 1013 9 HOH HOH . H 4 HOH B 14 1014 107 HOH HOH . H 4 HOH B 15 1015 36 HOH HOH . H 4 HOH B 16 1016 61 HOH HOH . H 4 HOH B 17 1017 22 HOH HOH . H 4 HOH B 18 1018 83 HOH HOH . H 4 HOH B 19 1019 21 HOH HOH . H 4 HOH B 20 1020 32 HOH HOH . H 4 HOH B 21 1021 38 HOH HOH . H 4 HOH B 22 1022 31 HOH HOH . H 4 HOH B 23 1023 14 HOH HOH . H 4 HOH B 24 1024 7 HOH HOH . H 4 HOH B 25 1025 43 HOH HOH . H 4 HOH B 26 1026 4 HOH HOH . H 4 HOH B 27 1027 2 HOH HOH . H 4 HOH B 28 1028 67 HOH HOH . H 4 HOH B 29 1029 18 HOH HOH . H 4 HOH B 30 1030 68 HOH HOH . H 4 HOH B 31 1031 52 HOH HOH . H 4 HOH B 32 1032 133 HOH HOH . H 4 HOH B 33 1033 48 HOH HOH . H 4 HOH B 34 1034 46 HOH HOH . H 4 HOH B 35 1035 87 HOH HOH . H 4 HOH B 36 1036 66 HOH HOH . H 4 HOH B 37 1037 91 HOH HOH . H 4 HOH B 38 1038 70 HOH HOH . H 4 HOH B 39 1039 56 HOH HOH . H 4 HOH B 40 1040 78 HOH HOH . H 4 HOH B 41 1041 24 HOH HOH . H 4 HOH B 42 1042 97 HOH HOH . H 4 HOH B 43 1043 122 HOH HOH . H 4 HOH B 44 1044 106 HOH HOH . H 4 HOH B 45 1045 92 HOH HOH . H 4 HOH B 46 1046 59 HOH HOH . H 4 HOH B 47 1047 123 HOH HOH . H 4 HOH B 48 1048 55 HOH HOH . H 4 HOH B 49 1049 127 HOH HOH . H 4 HOH B 50 1050 79 HOH HOH . H 4 HOH B 51 1051 112 HOH HOH . H 4 HOH B 52 1052 116 HOH HOH . H 4 HOH B 53 1053 134 HOH HOH . H 4 HOH B 54 1054 137 HOH HOH . H 4 HOH B 55 1055 93 HOH HOH . H 4 HOH B 56 1056 98 HOH HOH . H 4 HOH B 57 1057 73 HOH HOH . H 4 HOH B 58 1058 129 HOH HOH . H 4 HOH B 59 1059 135 HOH HOH . H 4 HOH B 60 1060 27 HOH HOH . H 4 HOH B 61 1061 74 HOH HOH . H 4 HOH B 62 1062 77 HOH HOH . I 4 HOH C 1 701 28 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C26 5FV . . . E 3 -15.829 -26.384 -4.223 0.76 15.77 ? C26 5FV 900 A 1 HETATM 2 C C05 5FV . . . E 3 -16.86 -26.55 -3.309 0.76 22.26 ? C05 5FV 900 A 1 HETATM 3 C C06 5FV . . . E 3 -16.835 -25.837 -2.118 0.76 20.85 ? C06 5FV 900 A 1 HETATM 4 C C01 5FV . . . E 3 -17.858 -25.991 -1.192 0.76 23.89 ? C01 5FV 900 A 1 HETATM 5 O O01 5FV . . . E 3 -17.832 -25.295 -0.028 0.76 28.07 ? O01 5FV 900 A 1 HETATM 6 C C02 5FV . . . E 3 -18.908 -26.86 -1.455 0.76 29.79 ? C02 5FV 900 A 1 HETATM 7 C C03 5FV . . . E 3 -18.932 -27.573 -2.645 0.76 21.46 ? C03 5FV 900 A 1 HETATM 8 C C04 5FV . . . E 3 -17.92 -27.41 -3.582 0.76 20.18 ? C04 5FV 900 A 1 HETATM 9 C C07 5FV . . . E 3 -17.956 -28.131 -4.7 0.76 21.77 ? C07 5FV 900 A 1 HETATM 10 C C08 5FV . . . E 3 -19.013 -28.258 -5.537 0.76 23.23 ? C08 5FV 900 A 1 HETATM 11 C C10 5FV . . . E 3 -20.189 -27.654 -5.372 0.76 19.82 ? C10 5FV 900 A 1 HETATM 12 C C11 5FV . . . E 3 -21.335 -28.43 -5.246 0.76 20.16 ? C11 5FV 900 A 1 HETATM 13 C C12 5FV . . . E 3 -22.577 -27.83 -5.081 0.76 16.15 ? C12 5FV 900 A 1 HETATM 14 C C13 5FV . . . E 3 -22.678 -26.446 -5.047 0.76 19.55 ? C13 5FV 900 A 1 HETATM 15 O O02 5FV . . . E 3 -23.891 -25.857 -4.887 0.76 13.69 ? O02 5FV 900 A 1 HETATM 16 C C14 5FV . . . E 3 -21.536 -25.666 -5.177 0.76 15.9 ? C14 5FV 900 A 1 HETATM 17 C C15 5FV . . . E 3 -20.294 -26.267 -5.341 0.76 16.52 ? C15 5FV 900 A 1 HETATM 18 C C25 5FV . . . E 3 -19.164 -25.472 -5.47 0.76 20.06 ? C25 5FV 900 A 1 HETATM 19 C C09 5FV . . . E 3 -18.823 -29.145 -6.523 0.76 26.86 ? C09 5FV 900 A 1 HETATM 20 S S02 5FV . . . E 3 -17.891 -30.481 -5.517 0.76 68.21 ? S02 5FV 900 A 1 HETATM 21 O O06 5FV . . . E 3 -17.019 -31.252 -6.5 0.76 74.84 ? O06 5FV 900 A 1 HETATM 22 C C16 5FV . . . E 3 -16.926 -28.889 -5.055 0.76 38.71 ? C16 5FV 900 A 1 HETATM 23 C C17 5FV . . . E 3 -16.508 -28.367 -6.418 0.76 57.19 ? C17 5FV 900 A 1 HETATM 24 C C18 5FV . . . E 3 -17.636 -28.794 -7.405 0.76 55.14 ? C18 5FV 900 A 1 HETATM 25 S S01 5FV . . . E 3 -18.131 -27.424 -8.701 0.76 96.36 ? S01 5FV 900 A 1 HETATM 26 O O04 5FV . . . E 3 -16.966 -26.449 -8.862 0.76 101.51 ? O04 5FV 900 A 1 HETATM 27 O O05 5FV . . . E 3 -19.365 -26.671 -8.21 0.76 93.83 ? O05 5FV 900 A 1 HETATM 28 O O03 5FV . . . E 3 -18.426 -28.087 -10.047 0.76 101.54 ? O03 5FV 900 A 1 HETATM 29 C C19 5FV . . . E 3 -19.527 -28.887 -9.984 0.76 104.07 ? C19 5FV 900 A 1 HETATM 30 C C20 5FV . . . E 3 -20.473 -28.712 -8.982 0.76 106.17 ? C20 5FV 900 A 1 HETATM 31 C C21 5FV . . . E 3 -21.592 -29.537 -8.935 0.76 108.19 ? C21 5FV 900 A 1 HETATM 32 C C22 5FV . . . E 3 -21.771 -30.533 -9.889 0.76 108.82 ? C22 5FV 900 A 1 HETATM 33 C C23 5FV . . . E 3 -20.827 -30.708 -10.892 0.76 106.82 ? C23 5FV 900 A 1 HETATM 34 C C24 5FV . . . E 3 -19.709 -29.883 -10.937 0.76 105.53 ? C24 5FV 900 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 508 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 34 #