data_5DUH # _model_server_result.job_id TDf7CWwz3zBjvO1LhxlB8w _model_server_result.datetime_utc '2024-11-08 15:02:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5duh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":901}' # _entry.id 5DUH # _exptl.entry_id 5DUH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 496.595 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'phenyl (1S,2S,4S,7S)-5,6-bis(4-hydroxy-3-methylphenyl)-7-thiabicyclo[2.2.1]hept-5-ene-2-sulfonate 7-oxide' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.18 _cell.angle_gamma 90 _cell.entry_id 5DUH _cell.length_a 56.012 _cell.length_b 84.298 _cell.length_c 58.701 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DUH _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C26 H24 O6 S2' _chem_comp.formula_weight 496.595 _chem_comp.id 5FT _chem_comp.mon_nstd_flag . _chem_comp.name 'phenyl (1S,2S,4S,7S)-5,6-bis(4-hydroxy-3-methylphenyl)-7-thiabicyclo[2.2.1]hept-5-ene-2-sulfonate 7-oxide' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C23 C22 5FT doub 1 n y C23 C24 5FT sing 2 n y C22 C21 5FT sing 3 n y C24 C19 5FT doub 4 n y O04 S01 5FT doub 5 n n C21 C20 5FT doub 6 n y C19 C20 5FT sing 7 n y C19 O03 5FT sing 8 n n O03 S01 5FT sing 9 n n S01 O05 5FT doub 10 n n S01 C18 5FT sing 11 n n C18 C17 5FT sing 12 n n C18 C09 5FT sing 13 n n C17 C16 5FT sing 14 n n O06 S02 5FT doub 15 n n C09 S02 5FT sing 16 n n C09 C08 5FT sing 17 n n S02 C16 5FT sing 18 n n C08 C10 5FT sing 19 n n C08 C07 5FT doub 20 n n C16 C07 5FT sing 21 n n C10 C15 5FT doub 22 n y C10 C11 5FT sing 23 n y C15 C14 5FT sing 24 n y C11 C12 5FT doub 25 n y C07 C04 5FT sing 26 n n C14 C13 5FT doub 27 n y C12 C13 5FT sing 28 n y C12 C26 5FT sing 29 n n C13 O02 5FT sing 30 n n C03 C04 5FT doub 31 n y C03 C02 5FT sing 32 n y C04 C05 5FT sing 33 n y C02 C01 5FT doub 34 n y C05 C06 5FT doub 35 n y C01 C06 5FT sing 36 n y C01 O01 5FT sing 37 n n C06 C25 5FT sing 38 n n C25 H1 5FT sing 39 n n C25 H2 5FT sing 40 n n C25 H3 5FT sing 41 n n C05 H4 5FT sing 42 n n O01 H5 5FT sing 43 n n C02 H6 5FT sing 44 n n C03 H7 5FT sing 45 n n C11 H8 5FT sing 46 n n C26 H9 5FT sing 47 n n C26 H10 5FT sing 48 n n C26 H11 5FT sing 49 n n O02 H12 5FT sing 50 n n C14 H13 5FT sing 51 n n C15 H14 5FT sing 52 n n C09 H15 5FT sing 53 n n C16 H17 5FT sing 54 n n C17 H18 5FT sing 55 n n C17 H19 5FT sing 56 n n C18 H20 5FT sing 57 n n C20 H21 5FT sing 58 n n C21 H22 5FT sing 59 n n C22 H23 5FT sing 60 n n C23 H24 5FT sing 61 n n C24 H25 5FT sing 62 n n # _atom_sites.entry_id 5DUH _atom_sites.fract_transf_matrix[1][1] 0.017853 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00621 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011863 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018037 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 5FT A 1 900 900 5FT UNK . F 3 5FT B 1 901 901 5FT UNK . G 4 HOH A 1 1001 195 HOH HOH . G 4 HOH A 2 1002 178 HOH HOH . G 4 HOH A 3 1003 102 HOH HOH . G 4 HOH A 4 1004 171 HOH HOH . G 4 HOH A 5 1005 187 HOH HOH . G 4 HOH A 6 1006 7 HOH HOH . G 4 HOH A 7 1007 123 HOH HOH . G 4 HOH A 8 1008 9 HOH HOH . G 4 HOH A 9 1009 19 HOH HOH . G 4 HOH A 10 1010 72 HOH HOH . G 4 HOH A 11 1011 23 HOH HOH . G 4 HOH A 12 1012 76 HOH HOH . G 4 HOH A 13 1013 8 HOH HOH . G 4 HOH A 14 1014 2 HOH HOH . G 4 HOH A 15 1015 67 HOH HOH . G 4 HOH A 16 1016 66 HOH HOH . G 4 HOH A 17 1017 20 HOH HOH . G 4 HOH A 18 1018 93 HOH HOH . G 4 HOH A 19 1019 34 HOH HOH . G 4 HOH A 20 1020 55 HOH HOH . G 4 HOH A 21 1021 43 HOH HOH . G 4 HOH A 22 1022 65 HOH HOH . G 4 HOH A 23 1023 18 HOH HOH . G 4 HOH A 24 1024 3 HOH HOH . G 4 HOH A 25 1025 31 HOH HOH . G 4 HOH A 26 1026 167 HOH HOH . G 4 HOH A 27 1027 96 HOH HOH . G 4 HOH A 28 1028 91 HOH HOH . G 4 HOH A 29 1029 41 HOH HOH . G 4 HOH A 30 1030 119 HOH HOH . G 4 HOH A 31 1031 126 HOH HOH . G 4 HOH A 32 1032 26 HOH HOH . G 4 HOH A 33 1033 47 HOH HOH . G 4 HOH A 34 1034 87 HOH HOH . G 4 HOH A 35 1035 42 HOH HOH . G 4 HOH A 36 1036 103 HOH HOH . G 4 HOH A 37 1037 179 HOH HOH . G 4 HOH A 38 1038 73 HOH HOH . G 4 HOH A 39 1039 29 HOH HOH . G 4 HOH A 40 1040 16 HOH HOH . G 4 HOH A 41 1041 32 HOH HOH . G 4 HOH A 42 1042 12 HOH HOH . G 4 HOH A 43 1043 89 HOH HOH . G 4 HOH A 44 1044 61 HOH HOH . G 4 HOH A 45 1045 190 HOH HOH . G 4 HOH A 46 1046 33 HOH HOH . G 4 HOH A 47 1047 27 HOH HOH . G 4 HOH A 48 1048 163 HOH HOH . G 4 HOH A 49 1049 71 HOH HOH . G 4 HOH A 50 1050 94 HOH HOH . G 4 HOH A 51 1051 10 HOH HOH . G 4 HOH A 52 1052 54 HOH HOH . G 4 HOH A 53 1053 108 HOH HOH . G 4 HOH A 54 1054 80 HOH HOH . G 4 HOH A 55 1055 92 HOH HOH . G 4 HOH A 56 1056 21 HOH HOH . G 4 HOH A 57 1057 62 HOH HOH . G 4 HOH A 58 1058 101 HOH HOH . G 4 HOH A 59 1059 40 HOH HOH . G 4 HOH A 60 1060 53 HOH HOH . G 4 HOH A 61 1061 121 HOH HOH . G 4 HOH A 62 1062 95 HOH HOH . G 4 HOH A 63 1063 37 HOH HOH . G 4 HOH A 64 1064 30 HOH HOH . G 4 HOH A 65 1065 145 HOH HOH . G 4 HOH A 66 1066 57 HOH HOH . G 4 HOH A 67 1067 81 HOH HOH . G 4 HOH A 68 1068 45 HOH HOH . G 4 HOH A 69 1069 160 HOH HOH . G 4 HOH A 70 1070 118 HOH HOH . G 4 HOH A 71 1071 48 HOH HOH . G 4 HOH A 72 1072 144 HOH HOH . G 4 HOH A 73 1073 44 HOH HOH . G 4 HOH A 74 1074 99 HOH HOH . G 4 HOH A 75 1075 50 HOH HOH . G 4 HOH A 76 1076 183 HOH HOH . G 4 HOH A 77 1077 114 HOH HOH . G 4 HOH A 78 1078 58 HOH HOH . G 4 HOH A 79 1079 106 HOH HOH . G 4 HOH A 80 1080 82 HOH HOH . G 4 HOH A 81 1081 168 HOH HOH . G 4 HOH A 82 1082 193 HOH HOH . G 4 HOH A 83 1083 25 HOH HOH . G 4 HOH A 84 1084 165 HOH HOH . G 4 HOH A 85 1085 122 HOH HOH . G 4 HOH A 86 1086 113 HOH HOH . G 4 HOH A 87 1087 154 HOH HOH . G 4 HOH A 88 1088 192 HOH HOH . G 4 HOH A 89 1089 75 HOH HOH . G 4 HOH A 90 1090 169 HOH HOH . G 4 HOH A 91 1091 124 HOH HOH . G 4 HOH A 92 1092 107 HOH HOH . G 4 HOH A 93 1093 161 HOH HOH . G 4 HOH A 94 1094 14 HOH HOH . G 4 HOH A 95 1095 100 HOH HOH . G 4 HOH A 96 1096 158 HOH HOH . G 4 HOH A 97 1097 86 HOH HOH . G 4 HOH A 98 1098 112 HOH HOH . G 4 HOH A 99 1099 105 HOH HOH . G 4 HOH A 100 1100 142 HOH HOH . G 4 HOH A 101 1101 63 HOH HOH . G 4 HOH A 102 1102 146 HOH HOH . G 4 HOH A 103 1103 133 HOH HOH . H 4 HOH B 1 1001 139 HOH HOH . H 4 HOH B 2 1002 172 HOH HOH . H 4 HOH B 3 1003 175 HOH HOH . H 4 HOH B 4 1004 174 HOH HOH . H 4 HOH B 5 1005 130 HOH HOH . H 4 HOH B 6 1006 39 HOH HOH . H 4 HOH B 7 1007 59 HOH HOH . H 4 HOH B 8 1008 6 HOH HOH . H 4 HOH B 9 1009 28 HOH HOH . H 4 HOH B 10 1010 141 HOH HOH . H 4 HOH B 11 1011 134 HOH HOH . H 4 HOH B 12 1012 176 HOH HOH . H 4 HOH B 13 1013 49 HOH HOH . H 4 HOH B 14 1014 150 HOH HOH . H 4 HOH B 15 1015 13 HOH HOH . H 4 HOH B 16 1016 115 HOH HOH . H 4 HOH B 17 1017 156 HOH HOH . H 4 HOH B 18 1018 136 HOH HOH . H 4 HOH B 19 1019 17 HOH HOH . H 4 HOH B 20 1020 177 HOH HOH . H 4 HOH B 21 1021 69 HOH HOH . H 4 HOH B 22 1022 56 HOH HOH . H 4 HOH B 23 1023 78 HOH HOH . H 4 HOH B 24 1024 149 HOH HOH . H 4 HOH B 25 1025 90 HOH HOH . H 4 HOH B 26 1026 84 HOH HOH . H 4 HOH B 27 1027 15 HOH HOH . H 4 HOH B 28 1028 51 HOH HOH . H 4 HOH B 29 1029 151 HOH HOH . H 4 HOH B 30 1030 64 HOH HOH . H 4 HOH B 31 1031 117 HOH HOH . H 4 HOH B 32 1032 4 HOH HOH . H 4 HOH B 33 1033 132 HOH HOH . H 4 HOH B 34 1034 170 HOH HOH . H 4 HOH B 35 1035 11 HOH HOH . H 4 HOH B 36 1036 52 HOH HOH . H 4 HOH B 37 1037 131 HOH HOH . H 4 HOH B 38 1038 22 HOH HOH . H 4 HOH B 39 1039 137 HOH HOH . H 4 HOH B 40 1040 157 HOH HOH . H 4 HOH B 41 1041 109 HOH HOH . H 4 HOH B 42 1042 68 HOH HOH . H 4 HOH B 43 1043 5 HOH HOH . H 4 HOH B 44 1044 182 HOH HOH . H 4 HOH B 45 1045 36 HOH HOH . H 4 HOH B 46 1046 1 HOH HOH . H 4 HOH B 47 1047 35 HOH HOH . H 4 HOH B 48 1048 38 HOH HOH . H 4 HOH B 49 1049 85 HOH HOH . H 4 HOH B 50 1050 60 HOH HOH . H 4 HOH B 51 1051 153 HOH HOH . H 4 HOH B 52 1052 104 HOH HOH . H 4 HOH B 53 1053 111 HOH HOH . H 4 HOH B 54 1054 140 HOH HOH . H 4 HOH B 55 1055 79 HOH HOH . H 4 HOH B 56 1056 185 HOH HOH . H 4 HOH B 57 1057 155 HOH HOH . H 4 HOH B 58 1058 116 HOH HOH . H 4 HOH B 59 1059 196 HOH HOH . H 4 HOH B 60 1060 120 HOH HOH . H 4 HOH B 61 1061 181 HOH HOH . H 4 HOH B 62 1062 180 HOH HOH . H 4 HOH B 63 1063 135 HOH HOH . H 4 HOH B 64 1064 138 HOH HOH . H 4 HOH B 65 1065 110 HOH HOH . H 4 HOH B 66 1066 70 HOH HOH . H 4 HOH B 67 1067 46 HOH HOH . H 4 HOH B 68 1068 98 HOH HOH . H 4 HOH B 69 1069 152 HOH HOH . H 4 HOH B 70 1070 162 HOH HOH . H 4 HOH B 71 1071 88 HOH HOH . H 4 HOH B 72 1072 143 HOH HOH . H 4 HOH B 73 1073 97 HOH HOH . H 4 HOH B 74 1074 166 HOH HOH . H 4 HOH B 75 1075 129 HOH HOH . H 4 HOH B 76 1076 186 HOH HOH . H 4 HOH B 77 1077 159 HOH HOH . H 4 HOH B 78 1078 127 HOH HOH . H 4 HOH B 79 1079 164 HOH HOH . H 4 HOH B 80 1080 77 HOH HOH . H 4 HOH B 81 1081 173 HOH HOH . H 4 HOH B 82 1082 194 HOH HOH . H 4 HOH B 83 1083 184 HOH HOH . H 4 HOH B 84 1084 148 HOH HOH . H 4 HOH B 85 1085 24 HOH HOH . H 4 HOH B 86 1086 128 HOH HOH . H 4 HOH B 87 1087 191 HOH HOH . I 4 HOH C 1 701 74 HOH HOH . I 4 HOH C 2 702 125 HOH HOH . I 4 HOH C 3 703 147 HOH HOH . I 4 HOH C 4 704 188 HOH HOH . J 4 HOH D 1 701 189 HOH HOH . J 4 HOH D 2 702 83 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C25 5FT . . . F 3 6.506 4.218 -9.739 1 40.16 ? C25 5FT 901 B 1 HETATM 2 C C06 5FT . . . F 3 6.412 4.512 -8.386 1 40.06 ? C06 5FT 901 B 1 HETATM 3 C C05 5FT . . . F 3 5.282 5.145 -7.881 1 39.75 ? C05 5FT 901 B 1 HETATM 4 C C01 5FT . . . F 3 7.447 4.175 -7.528 1 38.72 ? C01 5FT 901 B 1 HETATM 5 O O01 5FT . . . F 3 8.52 3.558 -8.085 1 35.62 ? O01 5FT 901 B 1 HETATM 6 C C02 5FT . . . F 3 7.375 4.458 -6.172 1 42.7 ? C02 5FT 901 B 1 HETATM 7 C C03 5FT . . . F 3 6.244 5.091 -5.674 1 45.24 ? C03 5FT 901 B 1 HETATM 8 C C04 5FT . . . F 3 5.193 5.424 -6.523 1 43.38 ? C04 5FT 901 B 1 HETATM 9 C C07 5FT . . . F 3 4.127 6.052 -6.032 1 44.41 ? C07 5FT 901 B 1 HETATM 10 C C08 5FT . . . F 3 2.832 5.77 -6.301 1 44.3 ? C08 5FT 901 B 1 HETATM 11 C C10 5FT . . . F 3 2.402 4.783 -7.084 1 41.17 ? C10 5FT 901 B 1 HETATM 12 C C11 5FT . . . F 3 2.865 3.484 -6.909 1 37.88 ? C11 5FT 901 B 1 HETATM 13 C C12 5FT . . . F 3 2.39 2.465 -7.727 1 36 ? C12 5FT 901 B 1 HETATM 14 C C26 5FT . . . F 3 2.848 1.165 -7.57 1 33.8 ? C26 5FT 901 B 1 HETATM 15 C C13 5FT . . . F 3 1.452 2.754 -8.706 1 36.3 ? C13 5FT 901 B 1 HETATM 16 O O02 5FT . . . F 3 1.03 1.714 -9.47 1 36.85 ? O02 5FT 901 B 1 HETATM 17 C C14 5FT . . . F 3 0.978 4.045 -8.886 1 37.63 ? C14 5FT 901 B 1 HETATM 18 C C15 5FT . . . F 3 1.456 5.059 -8.065 1 39.2 ? C15 5FT 901 B 1 HETATM 19 C C09 5FT . . . F 3 1.966 6.602 -5.713 1 45.76 ? C09 5FT 901 B 1 HETATM 20 S S02 5FT . . . F 3 2.923 8.244 -5.95 1 75.09 ? S02 5FT 901 B 1 HETATM 21 O O06 5FT . . . F 3 2.491 9.181 -4.828 1 78.3 ? O06 5FT 901 B 1 HETATM 22 C C16 5FT . . . F 3 4.273 7.096 -5.222 1 46.17 ? C16 5FT 901 B 1 HETATM 23 C C17 5FT . . . F 3 3.629 6.674 -3.912 1 47.95 ? C17 5FT 901 B 1 HETATM 24 C C18 5FT . . . F 3 2.108 6.496 -4.205 1 50.68 ? C18 5FT 901 B 1 HETATM 25 S S01 5FT . . . F 3 1.423 4.771 -3.609 1 66.77 ? S01 5FT 901 B 1 HETATM 26 O O04 5FT . . . F 3 0.975 4.882 -2.155 1 68.2 ? O04 5FT 901 B 1 HETATM 27 O O05 5FT . . . F 3 2.522 3.719 -3.725 1 66.18 ? O05 5FT 901 B 1 HETATM 28 O O03 5FT . . . F 3 0.239 4.362 -4.482 1 69.8 ? O03 5FT 901 B 1 HETATM 29 C C19 5FT . . . F 3 -0.779 5.256 -4.363 1 70.42 ? C19 5FT 901 B 1 HETATM 30 C C20 5FT . . . F 3 -1.623 5.491 -5.442 1 71.36 ? C20 5FT 901 B 1 HETATM 31 C C21 5FT . . . F 3 -2.668 6.4 -5.33 1 70.67 ? C21 5FT 901 B 1 HETATM 32 C C22 5FT . . . F 3 -2.869 7.079 -4.136 1 69.71 ? C22 5FT 901 B 1 HETATM 33 C C23 5FT . . . F 3 -2.026 6.845 -3.058 1 69.86 ? C23 5FT 901 B 1 HETATM 34 C C24 5FT . . . F 3 -0.981 5.935 -3.169 1 70.14 ? C24 5FT 901 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 360 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 34 #