data_5DUL
#
_model_server_result.job_id            '_pvARcJqhE6TYvPMf-5Vmg' 
_model_server_result.datetime_utc      '2024-10-10 01:21:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5dul 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":701}' 
#
_entry.id    5DUL 
#
_exptl.entry_id    5DUL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5DUL 
_cell.length_a            121.306 
_cell.length_b            121.306 
_cell.length_c            86.827 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5DUL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        145 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,I,J 1 1 
C,D,G,H,K,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 237 n n 
PA O2A NDP sing 238 n n 
PA O5B NDP sing 239 n n 
PA O3 NDP sing 240 n n 
O2A HOA2 NDP sing 241 n n 
O5B C5B NDP sing 242 n n 
C5B C4B NDP sing 243 n n 
C5B H51A NDP sing 244 n n 
C5B H52A NDP sing 245 n n 
C4B O4B NDP sing 246 n n 
C4B C3B NDP sing 247 n n 
C4B H4B NDP sing 248 n n 
O4B C1B NDP sing 249 n n 
C3B O3B NDP sing 250 n n 
C3B C2B NDP sing 251 n n 
C3B H3B NDP sing 252 n n 
O3B HO3A NDP sing 253 n n 
C2B O2B NDP sing 254 n n 
C2B C1B NDP sing 255 n n 
C2B H2B NDP sing 256 n n 
O2B P2B NDP sing 257 n n 
C1B N9A NDP sing 258 n n 
C1B H1B NDP sing 259 n n 
N9A C8A NDP sing 260 n y 
N9A C4A NDP sing 261 n y 
C8A N7A NDP doub 262 n y 
C8A H8A NDP sing 263 n n 
N7A C5A NDP sing 264 n y 
C5A C6A NDP sing 265 n y 
C5A C4A NDP doub 266 n y 
C6A N6A NDP sing 267 n n 
C6A N1A NDP doub 268 n y 
N6A H61A NDP sing 269 n n 
N6A H62A NDP sing 270 n n 
N1A C2A NDP sing 271 n y 
C2A N3A NDP doub 272 n y 
C2A H2A NDP sing 273 n n 
N3A C4A NDP sing 274 n y 
O3 PN NDP sing 275 n n 
PN O1N NDP doub 276 n n 
PN O2N NDP sing 277 n n 
PN O5D NDP sing 278 n n 
O2N H21N NDP sing 279 n n 
O5D C5D NDP sing 280 n n 
C5D C4D NDP sing 281 n n 
C5D H51N NDP sing 282 n n 
C5D H52N NDP sing 283 n n 
C4D O4D NDP sing 284 n n 
C4D C3D NDP sing 285 n n 
C4D H4D NDP sing 286 n n 
O4D C1D NDP sing 287 n n 
C3D O3D NDP sing 288 n n 
C3D C2D NDP sing 289 n n 
C3D H3D NDP sing 290 n n 
O3D HO3N NDP sing 291 n n 
C2D O2D NDP sing 292 n n 
C2D C1D NDP sing 293 n n 
C2D H2D NDP sing 294 n n 
O2D HO2N NDP sing 295 n n 
C1D N1N NDP sing 296 n n 
C1D H1D NDP sing 297 n n 
N1N C2N NDP sing 298 n n 
N1N C6N NDP sing 299 n n 
C2N C3N NDP doub 300 n n 
C2N H2N NDP sing 301 n n 
C3N C7N NDP sing 302 n n 
C3N C4N NDP sing 303 n n 
C7N O7N NDP doub 304 n n 
C7N N7N NDP sing 305 n n 
N7N H71N NDP sing 306 n n 
N7N H72N NDP sing 307 n n 
C4N C5N NDP sing 308 n n 
C4N H41N NDP sing 309 n n 
C4N H42N NDP sing 310 n n 
C5N C6N NDP doub 311 n n 
C5N H5N NDP sing 312 n n 
C6N H6N NDP sing 313 n n 
P2B O1X NDP doub 314 n n 
P2B O2X NDP sing 315 n n 
P2B O3X NDP sing 316 n n 
O2X HOP2 NDP sing 317 n n 
O3X HOP3 NDP sing 318 n n 
#
_atom_sites.entry_id                     5DUL 
_atom_sites.fract_transf_matrix[1][1]    0.008244 
_atom_sites.fract_transf_matrix[1][2]    0.004759 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009519 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011517 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NDP A 1 701 701 NDP NDP . 
F 2 NDP B 1 701 701 NDP NDP . 
G 2 NDP C 1 701 701 NDP NDP . 
H 2 NDP D 1 701 701 NDP NDP . 
I 3 HOH A 1 801 5 HOH HOH . 
I 3 HOH A 2 802 16 HOH HOH . 
I 3 HOH A 3 803 15 HOH HOH . 
I 3 HOH A 4 804 8 HOH HOH . 
I 3 HOH A 5 805 13 HOH HOH . 
I 3 HOH A 6 806 17 HOH HOH . 
J 3 HOH B 1 801 2 HOH HOH . 
J 3 HOH B 2 802 1 HOH HOH . 
J 3 HOH B 3 803 6 HOH HOH . 
J 3 HOH B 4 804 11 HOH HOH . 
K 3 HOH C 1 801 4 HOH HOH . 
K 3 HOH C 2 802 7 HOH HOH . 
L 3 HOH D 1 801 9 HOH HOH . 
L 3 HOH D 2 802 12 HOH HOH . 
L 3 HOH D 3 803 10 HOH HOH . 
L 3 HOH D 4 804 14 HOH HOH . 
L 3 HOH D 5 805 3 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . E 2 3.879 22.265 -19.804 1 74.18 ? PA NDP 701 A 1 
HETATM 2 O O1A NDP . . . E 2 3.773 21.389 -21.041 1 65.97 ? O1A NDP 701 A 1 
HETATM 3 O O2A NDP . . . E 2 3.008 22.243 -18.572 1 70.09 ? O2A NDP 701 A 1 
HETATM 4 O O5B NDP . . . E 2 3.619 23.761 -20.273 1 75.55 ? O5B NDP 701 A 1 
HETATM 5 C C5B NDP . . . E 2 4.591 24.53 -20.958 1 79.13 ? C5B NDP 701 A 1 
HETATM 6 C C4B NDP . . . E 2 4.202 25.987 -20.804 1 74.58 ? C4B NDP 701 A 1 
HETATM 7 O O4B NDP . . . E 2 4.697 26.687 -21.928 1 76.24 ? O4B NDP 701 A 1 
HETATM 8 C C3B NDP . . . E 2 2.7 26.203 -20.781 1 72.39 ? C3B NDP 701 A 1 
HETATM 9 O O3B NDP . . . E 2 2.449 27.031 -19.645 1 68.52 ? O3B NDP 701 A 1 
HETATM 10 C C2B NDP . . . E 2 2.378 26.83 -22.125 1 76.78 ? C2B NDP 701 A 1 
HETATM 11 O O2B NDP . . . E 2 1.385 27.845 -22.112 1 79.15 ? O2B NDP 701 A 1 
HETATM 12 C C1B NDP . . . E 2 3.673 27.518 -22.434 1 76.43 ? C1B NDP 701 A 1 
HETATM 13 N N9A NDP . . . E 2 3.958 27.737 -23.848 1 80.15 ? N9A NDP 701 A 1 
HETATM 14 C C8A NDP . . . E 2 4.081 26.82 -24.83 1 80.56 ? C8A NDP 701 A 1 
HETATM 15 N N7A NDP . . . E 2 4.411 27.442 -25.995 1 81.14 ? N7A NDP 701 A 1 
HETATM 16 C C5A NDP . . . E 2 4.505 28.773 -25.74 1 80.36 ? C5A NDP 701 A 1 
HETATM 17 C C6A NDP . . . E 2 4.811 30.009 -26.489 1 79.59 ? C6A NDP 701 A 1 
HETATM 18 N N6A NDP . . . E 2 5.089 29.976 -27.814 1 75.65 ? N6A NDP 701 A 1 
HETATM 19 N N1A NDP . . . E 2 4.811 31.184 -25.806 1 86.15 ? N1A NDP 701 A 1 
HETATM 20 C C2A NDP . . . E 2 4.537 31.273 -24.491 1 81.94 ? C2A NDP 701 A 1 
HETATM 21 N N3A NDP . . . E 2 4.245 30.195 -23.751 1 79.38 ? N3A NDP 701 A 1 
HETATM 22 C C4A NDP . . . E 2 4.216 28.957 -24.312 1 83.65 ? C4A NDP 701 A 1 
HETATM 23 O O3 NDP . . . E 2 5.427 22.136 -19.442 1 79.57 ? O3 NDP 701 A 1 
HETATM 24 P PN NDP . . . E 2 6.018 22.191 -17.97 1 78.29 ? PN NDP 701 A 1 
HETATM 25 O O1N NDP . . . E 2 5.663 20.853 -17.385 1 78.44 ? O1N NDP 701 A 1 
HETATM 26 O O2N NDP . . . E 2 5.654 23.558 -17.384 1 75.35 ? O2N NDP 701 A 1 
HETATM 27 O O5D NDP . . . E 2 7.55 22.213 -18.408 1 69.8 ? O5D NDP 701 A 1 
HETATM 28 C C5D NDP . . . E 2 8.158 23.419 -18.885 1 66.42 ? C5D NDP 701 A 1 
HETATM 29 C C4D NDP . . . E 2 9.579 23.115 -19.394 1 68.25 ? C4D NDP 701 A 1 
HETATM 30 O O4D NDP . . . E 2 10.435 22.654 -18.331 1 68.73 ? O4D NDP 701 A 1 
HETATM 31 C C3D NDP . . . E 2 9.628 22.008 -20.431 1 68.86 ? C3D NDP 701 A 1 
HETATM 32 O O3D NDP . . . E 2 10.744 22.194 -21.318 1 81.3 ? O3D NDP 701 A 1 
HETATM 33 C C2D NDP . . . E 2 9.877 20.761 -19.632 1 69.41 ? C2D NDP 701 A 1 
HETATM 34 O O2D NDP . . . E 2 10.447 19.696 -20.387 1 65.15 ? O2D NDP 701 A 1 
HETATM 35 C C1D NDP . . . E 2 10.839 21.306 -18.583 1 70.04 ? C1D NDP 701 A 1 
HETATM 36 N N1N NDP . . . E 2 10.9 20.474 -17.371 1 76.88 ? N1N NDP 701 A 1 
HETATM 37 C C2N NDP . . . E 2 9.804 19.895 -16.862 1 76.95 ? C2N NDP 701 A 1 
HETATM 38 C C3N NDP . . . E 2 9.862 19.087 -15.731 1 73.81 ? C3N NDP 701 A 1 
HETATM 39 C C7N NDP . . . E 2 8.619 18.496 -15.174 1 73.13 ? C7N NDP 701 A 1 
HETATM 40 O O7N NDP . . . E 2 8.767 17.553 -14.432 1 84.33 ? O7N NDP 701 A 1 
HETATM 41 N N7N NDP . . . E 2 7.4 18.996 -15.435 1 73.48 ? N7N NDP 701 A 1 
HETATM 42 C C4N NDP . . . E 2 11.161 18.82 -15.011 1 73.89 ? C4N NDP 701 A 1 
HETATM 43 C C5N NDP . . . E 2 12.282 19.494 -15.656 1 77.11 ? C5N NDP 701 A 1 
HETATM 44 C C6N NDP . . . E 2 12.107 20.283 -16.792 1 81.95 ? C6N NDP 701 A 1 
HETATM 45 P P2B NDP . . . E 2 -0.134 27.543 -22.509 1 77.06 ? P2B NDP 701 A 1 
HETATM 46 O O1X NDP . . . E 2 -0.286 26.178 -21.866 1 86.21 ? O1X NDP 701 A 1 
HETATM 47 O O2X NDP . . . E 2 -0.831 28.712 -21.874 1 69.15 ? O2X NDP 701 A 1 
HETATM 48 O O3X NDP . . . E 2 -0.252 27.545 -24.016 1 73.78 ? O3X NDP 701 A 1 
#
_model_server_stats.io_time_ms              27 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           48 
#