data_5DUL
#
_model_server_result.job_id            Jv1UT4FBtl4jbYKekb_DZA 
_model_server_result.datetime_utc      '2024-10-10 01:21:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5dul 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":701}' 
#
_entry.id    5DUL 
#
_exptl.entry_id    5DUL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5DUL 
_cell.length_a            121.306 
_cell.length_b            121.306 
_cell.length_c            86.827 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5DUL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        145 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,I,J 1 1 
C,D,G,H,K,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 237 n n 
PA O2A NDP sing 238 n n 
PA O5B NDP sing 239 n n 
PA O3 NDP sing 240 n n 
O2A HOA2 NDP sing 241 n n 
O5B C5B NDP sing 242 n n 
C5B C4B NDP sing 243 n n 
C5B H51A NDP sing 244 n n 
C5B H52A NDP sing 245 n n 
C4B O4B NDP sing 246 n n 
C4B C3B NDP sing 247 n n 
C4B H4B NDP sing 248 n n 
O4B C1B NDP sing 249 n n 
C3B O3B NDP sing 250 n n 
C3B C2B NDP sing 251 n n 
C3B H3B NDP sing 252 n n 
O3B HO3A NDP sing 253 n n 
C2B O2B NDP sing 254 n n 
C2B C1B NDP sing 255 n n 
C2B H2B NDP sing 256 n n 
O2B P2B NDP sing 257 n n 
C1B N9A NDP sing 258 n n 
C1B H1B NDP sing 259 n n 
N9A C8A NDP sing 260 n y 
N9A C4A NDP sing 261 n y 
C8A N7A NDP doub 262 n y 
C8A H8A NDP sing 263 n n 
N7A C5A NDP sing 264 n y 
C5A C6A NDP sing 265 n y 
C5A C4A NDP doub 266 n y 
C6A N6A NDP sing 267 n n 
C6A N1A NDP doub 268 n y 
N6A H61A NDP sing 269 n n 
N6A H62A NDP sing 270 n n 
N1A C2A NDP sing 271 n y 
C2A N3A NDP doub 272 n y 
C2A H2A NDP sing 273 n n 
N3A C4A NDP sing 274 n y 
O3 PN NDP sing 275 n n 
PN O1N NDP doub 276 n n 
PN O2N NDP sing 277 n n 
PN O5D NDP sing 278 n n 
O2N H21N NDP sing 279 n n 
O5D C5D NDP sing 280 n n 
C5D C4D NDP sing 281 n n 
C5D H51N NDP sing 282 n n 
C5D H52N NDP sing 283 n n 
C4D O4D NDP sing 284 n n 
C4D C3D NDP sing 285 n n 
C4D H4D NDP sing 286 n n 
O4D C1D NDP sing 287 n n 
C3D O3D NDP sing 288 n n 
C3D C2D NDP sing 289 n n 
C3D H3D NDP sing 290 n n 
O3D HO3N NDP sing 291 n n 
C2D O2D NDP sing 292 n n 
C2D C1D NDP sing 293 n n 
C2D H2D NDP sing 294 n n 
O2D HO2N NDP sing 295 n n 
C1D N1N NDP sing 296 n n 
C1D H1D NDP sing 297 n n 
N1N C2N NDP sing 298 n n 
N1N C6N NDP sing 299 n n 
C2N C3N NDP doub 300 n n 
C2N H2N NDP sing 301 n n 
C3N C7N NDP sing 302 n n 
C3N C4N NDP sing 303 n n 
C7N O7N NDP doub 304 n n 
C7N N7N NDP sing 305 n n 
N7N H71N NDP sing 306 n n 
N7N H72N NDP sing 307 n n 
C4N C5N NDP sing 308 n n 
C4N H41N NDP sing 309 n n 
C4N H42N NDP sing 310 n n 
C5N C6N NDP doub 311 n n 
C5N H5N NDP sing 312 n n 
C6N H6N NDP sing 313 n n 
P2B O1X NDP doub 314 n n 
P2B O2X NDP sing 315 n n 
P2B O3X NDP sing 316 n n 
O2X HOP2 NDP sing 317 n n 
O3X HOP3 NDP sing 318 n n 
#
_atom_sites.entry_id                     5DUL 
_atom_sites.fract_transf_matrix[1][1]    0.008244 
_atom_sites.fract_transf_matrix[1][2]    0.004759 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009519 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011517 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NDP A 1 701 701 NDP NDP . 
F 2 NDP B 1 701 701 NDP NDP . 
G 2 NDP C 1 701 701 NDP NDP . 
H 2 NDP D 1 701 701 NDP NDP . 
I 3 HOH A 1 801 5 HOH HOH . 
I 3 HOH A 2 802 16 HOH HOH . 
I 3 HOH A 3 803 15 HOH HOH . 
I 3 HOH A 4 804 8 HOH HOH . 
I 3 HOH A 5 805 13 HOH HOH . 
I 3 HOH A 6 806 17 HOH HOH . 
J 3 HOH B 1 801 2 HOH HOH . 
J 3 HOH B 2 802 1 HOH HOH . 
J 3 HOH B 3 803 6 HOH HOH . 
J 3 HOH B 4 804 11 HOH HOH . 
K 3 HOH C 1 801 4 HOH HOH . 
K 3 HOH C 2 802 7 HOH HOH . 
L 3 HOH D 1 801 9 HOH HOH . 
L 3 HOH D 2 802 12 HOH HOH . 
L 3 HOH D 3 803 10 HOH HOH . 
L 3 HOH D 4 804 14 HOH HOH . 
L 3 HOH D 5 805 3 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . H 2 45.76 61.693 -5.021 1 71.75 ? PA NDP 701 D 1 
HETATM 2 O O1A NDP . . . H 2 45.697 62.236 -6.438 1 60.83 ? O1A NDP 701 D 1 
HETATM 3 O O2A NDP . . . H 2 46.109 62.53 -3.792 1 60.32 ? O2A NDP 701 D 1 
HETATM 4 O O5B NDP . . . H 2 46.847 60.512 -5.182 1 56.39 ? O5B NDP 701 D 1 
HETATM 5 C C5B NDP . . . H 2 46.708 59.54 -6.196 1 58.73 ? C5B NDP 701 D 1 
HETATM 6 C C4B NDP . . . H 2 47.789 58.498 -5.956 1 61.52 ? C4B NDP 701 D 1 
HETATM 7 O O4B NDP . . . H 2 47.859 57.46 -6.955 1 61.7 ? O4B NDP 701 D 1 
HETATM 8 C C3B NDP . . . H 2 49.1 59.231 -6.021 1 60.76 ? C3B NDP 701 D 1 
HETATM 9 O O3B NDP . . . H 2 49.927 58.727 -4.963 1 61.47 ? O3B NDP 701 D 1 
HETATM 10 C C2B NDP . . . H 2 49.652 58.905 -7.376 1 60.13 ? C2B NDP 701 D 1 
HETATM 11 O O2B NDP . . . H 2 51.074 58.863 -7.303 1 64.24 ? O2B NDP 701 D 1 
HETATM 12 C C1B NDP . . . H 2 49.14 57.508 -7.58 1 61.33 ? C1B NDP 701 D 1 
HETATM 13 N N9A NDP . . . H 2 49.088 57.087 -8.995 1 63.61 ? N9A NDP 701 D 1 
HETATM 14 C C8A NDP . . . H 2 48.487 57.716 -10.027 1 65.55 ? C8A NDP 701 D 1 
HETATM 15 N N7A NDP . . . H 2 48.634 56.965 -11.16 1 63.45 ? N7A NDP 701 D 1 
HETATM 16 C C5A NDP . . . H 2 49.306 55.842 -10.847 1 55.16 ? C5A NDP 701 D 1 
HETATM 17 C C6A NDP . . . H 2 49.784 54.652 -11.565 1 57.79 ? C6A NDP 701 D 1 
HETATM 18 N N6A NDP . . . H 2 49.528 54.551 -12.894 1 57.51 ? N6A NDP 701 D 1 
HETATM 19 N N1A NDP . . . H 2 50.466 53.689 -10.883 1 57.01 ? N1A NDP 701 D 1 
HETATM 20 C C2A NDP . . . H 2 50.714 53.826 -9.563 1 61.88 ? C2A NDP 701 D 1 
HETATM 21 N N3A NDP . . . H 2 50.293 54.905 -8.852 1 61.93 ? N3A NDP 701 D 1 
HETATM 22 C C4A NDP . . . H 2 49.611 55.929 -9.427 1 60.16 ? C4A NDP 701 D 1 
HETATM 23 O O3 NDP . . . H 2 44.345 60.925 -4.698 1 66.47 ? O3 NDP 701 D 1 
HETATM 24 P PN NDP . . . H 2 43.751 60.678 -3.227 1 72.68 ? PN NDP 701 D 1 
HETATM 25 O O1N NDP . . . H 2 43.012 61.882 -2.687 1 76.67 ? O1N NDP 701 D 1 
HETATM 26 O O2N NDP . . . H 2 44.87 60.094 -2.389 1 82.35 ? O2N NDP 701 D 1 
HETATM 27 O O5D NDP . . . H 2 42.654 59.553 -3.513 1 72.81 ? O5D NDP 701 D 1 
HETATM 28 C C5D NDP . . . H 2 43.019 58.268 -4.001 1 74.25 ? C5D NDP 701 D 1 
HETATM 29 C C4D NDP . . . H 2 41.765 57.441 -4.275 1 74.04 ? C4D NDP 701 D 1 
HETATM 30 O O4D NDP . . . H 2 40.909 57.529 -3.135 1 74.34 ? O4D NDP 701 D 1 
HETATM 31 C C3D NDP . . . H 2 40.922 57.943 -5.435 1 74.37 ? C3D NDP 701 D 1 
HETATM 32 O O3D NDP . . . H 2 40.342 56.786 -6.072 1 69.18 ? O3D NDP 701 D 1 
HETATM 33 C C2D NDP . . . H 2 39.915 58.877 -4.761 1 70.81 ? C2D NDP 701 D 1 
HETATM 34 O O2D NDP . . . H 2 38.72 59.134 -5.495 1 69.67 ? O2D NDP 701 D 1 
HETATM 35 C C1D NDP . . . H 2 39.644 58.082 -3.5 1 70.27 ? C1D NDP 701 D 1 
HETATM 36 N N1N NDP . . . H 2 39.124 58.801 -2.334 1 73.8 ? N1N NDP 701 D 1 
HETATM 37 C C2N NDP . . . H 2 39.677 59.952 -1.934 1 73.56 ? C2N NDP 701 D 1 
HETATM 38 C C3N NDP . . . H 2 39.234 60.652 -0.813 1 68.95 ? C3N NDP 701 D 1 
HETATM 39 C C7N NDP . . . H 2 39.874 61.949 -0.399 1 74.06 ? C7N NDP 701 D 1 
HETATM 40 O O7N NDP . . . H 2 39.489 62.463 0.64 1 71.09 ? O7N NDP 701 D 1 
HETATM 41 N N7N NDP . . . H 2 40.847 62.508 -1.133 1 75.48 ? N7N NDP 701 D 1 
HETATM 42 C C4N NDP . . . H 2 38.105 60.13 0.017 1 72.76 ? C4N NDP 701 D 1 
HETATM 43 C C5N NDP . . . H 2 37.593 58.869 -0.506 1 76.6 ? C5N NDP 701 D 1 
HETATM 44 C C6N NDP . . . H 2 38.126 58.251 -1.633 1 76.68 ? C6N NDP 701 D 1 
HETATM 45 P P2B NDP . . . H 2 51.897 60.132 -7.788 1 66.61 ? P2B NDP 701 D 1 
HETATM 46 O O1X NDP . . . H 2 51.05 61.206 -7.17 1 61.01 ? O1X NDP 701 D 1 
HETATM 47 O O2X NDP . . . H 2 53.254 59.982 -7.192 1 63.95 ? O2X NDP 701 D 1 
HETATM 48 O O3X NDP . . . H 2 51.835 60.017 -9.308 1 61.39 ? O3X NDP 701 D 1 
#
_model_server_stats.io_time_ms              28 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           262 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           48 
#