data_5DUO # _model_server_result.job_id 883HBrxaIhYlNaz19tlb6Q _model_server_result.datetime_utc '2024-11-07 05:43:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5duo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":202}' # _entry.id 5DUO # _exptl.entry_id 5DUO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 15 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.05 _cell.angle_gamma 90 _cell.entry_id 5DUO _cell.length_a 58.388 _cell.length_b 99.191 _cell.length_c 95.326 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DUO _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,V,W 1 1 C,R,S,T,U,X 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 41.752896 0 93.863303 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 U N N # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 220 n n C10 C9 OLC doub 221 n n C10 C11 OLC sing 222 n n C9 C8 OLC sing 223 n n C17 C16 OLC sing 224 z n C11 C12 OLC sing 225 n n C8 C7 OLC sing 226 n n C24 C22 OLC sing 227 n n C24 O25 OLC sing 228 n n C16 C15 OLC sing 229 n n C12 C13 OLC sing 230 n n C7 C6 OLC sing 231 n n C15 C14 OLC sing 232 n n C13 C14 OLC sing 233 n n C6 C5 OLC sing 234 n n C5 C4 OLC sing 235 n n C4 C3 OLC sing 236 n n C3 C2 OLC sing 237 n n C2 C1 OLC sing 238 n n C21 C22 OLC sing 239 n n C21 O20 OLC sing 240 n n C1 O19 OLC doub 241 n n C1 O20 OLC sing 242 n n C22 O23 OLC sing 243 n n C18 H18 OLC sing 244 n n C18 H18A OLC sing 245 n n C18 H18B OLC sing 246 n n C10 H10 OLC sing 247 n n C9 H9 OLC sing 248 n n C17 H17 OLC sing 249 n n C17 H17A OLC sing 250 n n C11 H11 OLC sing 251 n n C11 H11A OLC sing 252 n n C8 H8 OLC sing 253 n n C8 H8A OLC sing 254 n n C24 H24 OLC sing 255 n n C24 H24A OLC sing 256 n n C16 H16 OLC sing 257 n n C16 H16A OLC sing 258 n n C12 H12 OLC sing 259 n n C12 H12A OLC sing 260 n n C7 H7 OLC sing 261 n n C7 H7A OLC sing 262 n n C15 H15 OLC sing 263 n n C15 H15A OLC sing 264 n n C13 H13 OLC sing 265 n n C13 H13A OLC sing 266 n n C6 H6 OLC sing 267 n n C6 H6A OLC sing 268 n n C14 H14 OLC sing 269 n n C14 H14A OLC sing 270 n n C5 H5 OLC sing 271 n n C5 H5A OLC sing 272 n n C4 H4 OLC sing 273 n n C4 H4A OLC sing 274 n n C3 H3 OLC sing 275 n n C3 H3A OLC sing 276 n n C2 H2 OLC sing 277 n n C2 H2A OLC sing 278 n n C21 H21 OLC sing 279 n n C21 H21A OLC sing 280 n n C22 H22 OLC sing 281 n n O25 HO25 OLC sing 282 n n O23 HO23 OLC sing 283 n n # _atom_sites.entry_id 5DUO _atom_sites.fract_transf_matrix[1][1] 0.017127 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003036 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010082 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010654 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 OLC A 1 201 201 OLC OLC . E 2 OLC A 1 202 203 OLC OLC . F 2 OLC A 1 203 205 OLC OLC . G 2 OLC A 1 204 209 OLC OLC . H 2 OLC A 1 205 218 OLC OLC . I 3 FMT A 1 206 301 FMT FMT . J 3 FMT A 1 207 302 FMT FMT . K 4 PP9 A 1 208 501 PP9 HMX . L 2 OLC B 1 201 210 OLC OLC . M 2 OLC B 1 202 215 OLC OLC . N 2 OLC B 1 203 217 OLC OLC . O 2 OLC B 1 204 219 OLC OLC . P 2 OLC B 1 205 220 OLC OLC . Q 2 OLC B 1 206 412 OLC OLC . R 2 OLC C 1 201 202 OLC OLC . S 2 OLC C 1 202 206 OLC OLC . T 2 OLC C 1 203 211 OLC OLC . U 2 OLC C 1 204 216 OLC OLC . V 5 HOH A 1 301 1064 HOH HOH . V 5 HOH A 2 302 1058 HOH HOH . V 5 HOH A 3 303 1056 HOH HOH . V 5 HOH A 4 304 1038 HOH HOH . V 5 HOH A 5 305 1010 HOH HOH . V 5 HOH A 6 306 1008 HOH HOH . V 5 HOH A 7 307 1045 HOH HOH . V 5 HOH A 8 308 1039 HOH HOH . V 5 HOH A 9 309 1001 HOH HOH . V 5 HOH A 10 310 1011 HOH HOH . V 5 HOH A 11 311 1048 HOH HOH . V 5 HOH A 12 312 1044 HOH HOH . V 5 HOH A 13 313 1040 HOH HOH . V 5 HOH A 14 314 1057 HOH HOH . V 5 HOH A 15 315 1063 HOH HOH . V 5 HOH A 16 316 1037 HOH HOH . V 5 HOH A 17 317 1025 HOH HOH . V 5 HOH A 18 318 1062 HOH HOH . V 5 HOH A 19 319 1046 HOH HOH . V 5 HOH A 20 320 1014 HOH HOH . V 5 HOH A 21 321 1016 HOH HOH . V 5 HOH A 22 322 1018 HOH HOH . V 5 HOH A 23 323 1065 HOH HOH . V 5 HOH A 24 324 1021 HOH HOH . V 5 HOH A 25 325 1066 HOH HOH . V 5 HOH A 26 326 1067 HOH HOH . V 5 HOH A 27 327 1050 HOH HOH . V 5 HOH A 28 328 1059 HOH HOH . W 5 HOH B 1 301 1061 HOH HOH . W 5 HOH B 2 302 1004 HOH HOH . W 5 HOH B 3 303 1007 HOH HOH . W 5 HOH B 4 304 1003 HOH HOH . W 5 HOH B 5 305 1002 HOH HOH . W 5 HOH B 6 306 1012 HOH HOH . W 5 HOH B 7 307 1052 HOH HOH . W 5 HOH B 8 308 1020 HOH HOH . W 5 HOH B 9 309 1019 HOH HOH . W 5 HOH B 10 310 1015 HOH HOH . W 5 HOH B 11 311 1035 HOH HOH . W 5 HOH B 12 312 1026 HOH HOH . W 5 HOH B 13 313 1023 HOH HOH . W 5 HOH B 14 314 1006 HOH HOH . W 5 HOH B 15 315 1042 HOH HOH . X 5 HOH C 1 301 1031 HOH HOH . X 5 HOH C 2 302 1080 HOH HOH . X 5 HOH C 3 303 1041 HOH HOH . X 5 HOH C 4 304 1027 HOH HOH . X 5 HOH C 5 305 1017 HOH HOH . X 5 HOH C 6 306 1005 HOH HOH . X 5 HOH C 7 307 1009 HOH HOH . X 5 HOH C 8 308 1043 HOH HOH . X 5 HOH C 9 309 1022 HOH HOH . X 5 HOH C 10 310 1051 HOH HOH . X 5 HOH C 11 311 1028 HOH HOH . X 5 HOH C 12 312 1024 HOH HOH . X 5 HOH C 13 313 1060 HOH HOH . X 5 HOH C 14 314 1079 HOH HOH . X 5 HOH C 15 315 1069 HOH HOH . X 5 HOH C 16 316 1073 HOH HOH . X 5 HOH C 17 317 1032 HOH HOH . X 5 HOH C 18 318 1074 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . S 2 4.925 38.123 32.865 1 39.23 ? C18 OLC 202 C 1 HETATM 2 C C10 OLC . . . S 2 1.7 43.937 37.87 1 56.48 ? C10 OLC 202 C 1 HETATM 3 C C9 OLC . . . S 2 1.87 45.245 37.549 1 58.16 ? C9 OLC 202 C 1 HETATM 4 C C17 OLC . . . S 2 4.672 39.464 33.535 1 41.21 ? C17 OLC 202 C 1 HETATM 5 C C11 OLC . . . S 2 2.437 42.872 37.071 1 61.43 ? C11 OLC 202 C 1 HETATM 6 C C8 OLC . . . S 2 1.389 46.372 38.453 1 44.8 ? C8 OLC 202 C 1 HETATM 7 C C24 OLC . . . S 2 0.799 56.008 38.282 1 68.65 ? C24 OLC 202 C 1 HETATM 8 C C16 OLC . . . S 2 5.251 39.468 34.937 1 42.6 ? C16 OLC 202 C 1 HETATM 9 C C12 OLC . . . S 2 2.629 41.537 37.805 1 58.21 ? C12 OLC 202 C 1 HETATM 10 C C7 OLC . . . S 2 2.075 47.649 38.034 1 49.79 ? C7 OLC 202 C 1 HETATM 11 C C15 OLC . . . S 2 4.592 40.548 35.782 1 45.16 ? C15 OLC 202 C 1 HETATM 12 C C13 OLC . . . S 2 4.087 41.283 38.163 1 42.93 ? C13 OLC 202 C 1 HETATM 13 C C6 OLC . . . S 2 3.511 47.579 38.516 1 55.15 ? C6 OLC 202 C 1 HETATM 14 C C14 OLC . . . S 2 4.765 40.259 37.268 1 46.15 ? C14 OLC 202 C 1 HETATM 15 C C5 OLC . . . S 2 4.333 48.749 38.006 1 50.76 ? C5 OLC 202 C 1 HETATM 16 C C4 OLC . . . S 2 5.154 49.361 39.123 1 39.88 ? C4 OLC 202 C 1 HETATM 17 C C3 OLC . . . S 2 5.276 50.849 38.856 1 40.95 ? C3 OLC 202 C 1 HETATM 18 C C2 OLC . . . S 2 3.889 51.426 38.624 1 51.2 ? C2 OLC 202 C 1 HETATM 19 C C21 OLC . . . S 2 2.961 55.039 39.107 1 51.02 ? C21 OLC 202 C 1 HETATM 20 C C1 OLC . . . S 2 3.953 52.943 38.596 1 53.46 ? C1 OLC 202 C 1 HETATM 21 C C22 OLC . . . S 2 2.309 56.141 38.292 1 61.71 ? C22 OLC 202 C 1 HETATM 22 O O19 OLC . . . S 2 5.05 53.446 38.54 1 53.79 ? O19 OLC 202 C 1 HETATM 23 O O25 OLC . . . S 2 0.214 57.298 38.302 1 75.57 ? O25 OLC 202 C 1 HETATM 24 O O23 OLC . . . S 2 2.634 57.413 38.822 1 64.7 ? O23 OLC 202 C 1 HETATM 25 O O20 OLC . . . S 2 2.804 53.773 38.507 1 50.67 ? O20 OLC 202 C 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 25 #