data_5DUO
#
_model_server_result.job_id            kG6YD-xVN44uhwvKQHD4OA 
_model_server_result.datetime_utc      '2024-11-07 05:32:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5duo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":204}' 
#
_entry.id    5DUO 
#
_exptl.entry_id    5DUO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    15 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.05 
_cell.angle_gamma         90 
_cell.entry_id            5DUO 
_cell.length_a            58.388 
_cell.length_b            99.191 
_cell.length_c            95.326 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5DUO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,V,W 1 1 
C,R,S,T,U,X 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 41.752896 0 93.863303 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
? 2 S N N 
? 2 T N N 
? 2 U N N 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                OLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Oleoyl-R-glycerol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 C17 OLC sing 220 n n 
C10 C9 OLC doub 221 n n 
C10 C11 OLC sing 222 n n 
C9 C8 OLC sing 223 n n 
C17 C16 OLC sing 224 z n 
C11 C12 OLC sing 225 n n 
C8 C7 OLC sing 226 n n 
C24 C22 OLC sing 227 n n 
C24 O25 OLC sing 228 n n 
C16 C15 OLC sing 229 n n 
C12 C13 OLC sing 230 n n 
C7 C6 OLC sing 231 n n 
C15 C14 OLC sing 232 n n 
C13 C14 OLC sing 233 n n 
C6 C5 OLC sing 234 n n 
C5 C4 OLC sing 235 n n 
C4 C3 OLC sing 236 n n 
C3 C2 OLC sing 237 n n 
C2 C1 OLC sing 238 n n 
C21 C22 OLC sing 239 n n 
C21 O20 OLC sing 240 n n 
C1 O19 OLC doub 241 n n 
C1 O20 OLC sing 242 n n 
C22 O23 OLC sing 243 n n 
C18 H18 OLC sing 244 n n 
C18 H18A OLC sing 245 n n 
C18 H18B OLC sing 246 n n 
C10 H10 OLC sing 247 n n 
C9 H9 OLC sing 248 n n 
C17 H17 OLC sing 249 n n 
C17 H17A OLC sing 250 n n 
C11 H11 OLC sing 251 n n 
C11 H11A OLC sing 252 n n 
C8 H8 OLC sing 253 n n 
C8 H8A OLC sing 254 n n 
C24 H24 OLC sing 255 n n 
C24 H24A OLC sing 256 n n 
C16 H16 OLC sing 257 n n 
C16 H16A OLC sing 258 n n 
C12 H12 OLC sing 259 n n 
C12 H12A OLC sing 260 n n 
C7 H7 OLC sing 261 n n 
C7 H7A OLC sing 262 n n 
C15 H15 OLC sing 263 n n 
C15 H15A OLC sing 264 n n 
C13 H13 OLC sing 265 n n 
C13 H13A OLC sing 266 n n 
C6 H6 OLC sing 267 n n 
C6 H6A OLC sing 268 n n 
C14 H14 OLC sing 269 n n 
C14 H14A OLC sing 270 n n 
C5 H5 OLC sing 271 n n 
C5 H5A OLC sing 272 n n 
C4 H4 OLC sing 273 n n 
C4 H4A OLC sing 274 n n 
C3 H3 OLC sing 275 n n 
C3 H3A OLC sing 276 n n 
C2 H2 OLC sing 277 n n 
C2 H2A OLC sing 278 n n 
C21 H21 OLC sing 279 n n 
C21 H21A OLC sing 280 n n 
C22 H22 OLC sing 281 n n 
O25 HO25 OLC sing 282 n n 
O23 HO23 OLC sing 283 n n 
#
_atom_sites.entry_id                     5DUO 
_atom_sites.fract_transf_matrix[1][1]    0.017127 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003036 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010082 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010654 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 OLC A 1 201 201 OLC OLC . 
E 2 OLC A 1 202 203 OLC OLC . 
F 2 OLC A 1 203 205 OLC OLC . 
G 2 OLC A 1 204 209 OLC OLC . 
H 2 OLC A 1 205 218 OLC OLC . 
I 3 FMT A 1 206 301 FMT FMT . 
J 3 FMT A 1 207 302 FMT FMT . 
K 4 PP9 A 1 208 501 PP9 HMX . 
L 2 OLC B 1 201 210 OLC OLC . 
M 2 OLC B 1 202 215 OLC OLC . 
N 2 OLC B 1 203 217 OLC OLC . 
O 2 OLC B 1 204 219 OLC OLC . 
P 2 OLC B 1 205 220 OLC OLC . 
Q 2 OLC B 1 206 412 OLC OLC . 
R 2 OLC C 1 201 202 OLC OLC . 
S 2 OLC C 1 202 206 OLC OLC . 
T 2 OLC C 1 203 211 OLC OLC . 
U 2 OLC C 1 204 216 OLC OLC . 
V 5 HOH A 1 301 1064 HOH HOH . 
V 5 HOH A 2 302 1058 HOH HOH . 
V 5 HOH A 3 303 1056 HOH HOH . 
V 5 HOH A 4 304 1038 HOH HOH . 
V 5 HOH A 5 305 1010 HOH HOH . 
V 5 HOH A 6 306 1008 HOH HOH . 
V 5 HOH A 7 307 1045 HOH HOH . 
V 5 HOH A 8 308 1039 HOH HOH . 
V 5 HOH A 9 309 1001 HOH HOH . 
V 5 HOH A 10 310 1011 HOH HOH . 
V 5 HOH A 11 311 1048 HOH HOH . 
V 5 HOH A 12 312 1044 HOH HOH . 
V 5 HOH A 13 313 1040 HOH HOH . 
V 5 HOH A 14 314 1057 HOH HOH . 
V 5 HOH A 15 315 1063 HOH HOH . 
V 5 HOH A 16 316 1037 HOH HOH . 
V 5 HOH A 17 317 1025 HOH HOH . 
V 5 HOH A 18 318 1062 HOH HOH . 
V 5 HOH A 19 319 1046 HOH HOH . 
V 5 HOH A 20 320 1014 HOH HOH . 
V 5 HOH A 21 321 1016 HOH HOH . 
V 5 HOH A 22 322 1018 HOH HOH . 
V 5 HOH A 23 323 1065 HOH HOH . 
V 5 HOH A 24 324 1021 HOH HOH . 
V 5 HOH A 25 325 1066 HOH HOH . 
V 5 HOH A 26 326 1067 HOH HOH . 
V 5 HOH A 27 327 1050 HOH HOH . 
V 5 HOH A 28 328 1059 HOH HOH . 
W 5 HOH B 1 301 1061 HOH HOH . 
W 5 HOH B 2 302 1004 HOH HOH . 
W 5 HOH B 3 303 1007 HOH HOH . 
W 5 HOH B 4 304 1003 HOH HOH . 
W 5 HOH B 5 305 1002 HOH HOH . 
W 5 HOH B 6 306 1012 HOH HOH . 
W 5 HOH B 7 307 1052 HOH HOH . 
W 5 HOH B 8 308 1020 HOH HOH . 
W 5 HOH B 9 309 1019 HOH HOH . 
W 5 HOH B 10 310 1015 HOH HOH . 
W 5 HOH B 11 311 1035 HOH HOH . 
W 5 HOH B 12 312 1026 HOH HOH . 
W 5 HOH B 13 313 1023 HOH HOH . 
W 5 HOH B 14 314 1006 HOH HOH . 
W 5 HOH B 15 315 1042 HOH HOH . 
X 5 HOH C 1 301 1031 HOH HOH . 
X 5 HOH C 2 302 1080 HOH HOH . 
X 5 HOH C 3 303 1041 HOH HOH . 
X 5 HOH C 4 304 1027 HOH HOH . 
X 5 HOH C 5 305 1017 HOH HOH . 
X 5 HOH C 6 306 1005 HOH HOH . 
X 5 HOH C 7 307 1009 HOH HOH . 
X 5 HOH C 8 308 1043 HOH HOH . 
X 5 HOH C 9 309 1022 HOH HOH . 
X 5 HOH C 10 310 1051 HOH HOH . 
X 5 HOH C 11 311 1028 HOH HOH . 
X 5 HOH C 12 312 1024 HOH HOH . 
X 5 HOH C 13 313 1060 HOH HOH . 
X 5 HOH C 14 314 1079 HOH HOH . 
X 5 HOH C 15 315 1069 HOH HOH . 
X 5 HOH C 16 316 1073 HOH HOH . 
X 5 HOH C 17 317 1032 HOH HOH . 
X 5 HOH C 18 318 1074 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C8 OLC . . . O 2 -41.396 38.884 16.793 1 44.18 ? C8 OLC 204 B 1 
HETATM 2 C C24 OLC . . . O 2 -36.139 28.234 10.418 1 81 ? C24 OLC 204 B 1 
HETATM 3 C C7 OLC . . . O 2 -41.653 37.793 15.768 1 43.92 ? C7 OLC 204 B 1 
HETATM 4 C C6 OLC . . . O 2 -40.384 36.999 15.512 1 49.99 ? C6 OLC 204 B 1 
HETATM 5 C C5 OLC . . . O 2 -40.515 36.152 14.258 1 53.24 ? C5 OLC 204 B 1 
HETATM 6 C C4 OLC . . . O 2 -39.651 34.909 14.374 1 61.2 ? C4 OLC 204 B 1 
HETATM 7 C C3 OLC . . . O 2 -39.642 34.047 13.113 1 58.63 ? C3 OLC 204 B 1 
HETATM 8 C C2 OLC . . . O 2 -38.766 32.821 13.348 1 61.01 ? C2 OLC 204 B 1 
HETATM 9 C C21 OLC . . . O 2 -37.606 30.226 10.794 1 72.92 ? C21 OLC 204 B 1 
HETATM 10 C C1 OLC . . . O 2 -38.553 32.007 12.078 1 64.25 ? C1 OLC 204 B 1 
HETATM 11 C C22 OLC . . . O 2 -36.189 29.743 10.487 1 76.7 ? C22 OLC 204 B 1 
HETATM 12 O O19 OLC . . . O 2 -39.016 32.419 11.033 1 63.53 ? O19 OLC 204 B 1 
HETATM 13 O O25 OLC . . . O 2 -35.336 27.86 9.317 1 81.02 ? O25 OLC 204 B 1 
HETATM 14 O O23 OLC . . . O 2 -35.725 30.221 9.24 1 66.43 ? O23 OLC 204 B 1 
HETATM 15 O O20 OLC . . . O 2 -37.725 30.855 12.064 1 69.81 ? O20 OLC 204 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           238 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           15 
#