data_5DUO # _model_server_result.job_id s3IZI3fhxVyWqj_G9Zpmbg _model_server_result.datetime_utc '2024-11-25 10:35:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5duo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":207}' # _entry.id 5DUO # _exptl.entry_id 5DUO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 46.025 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FORMIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.05 _cell.angle_gamma 90 _cell.entry_id 5DUO _cell.length_a 58.388 _cell.length_b 99.191 _cell.length_c 95.326 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DUO _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,V,W 1 1 C,R,S,T,U,X 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 41.752896 0 93.863303 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 J N N # _chem_comp.formula 'C H2 O2' _chem_comp.formula_weight 46.025 _chem_comp.id FMT _chem_comp.mon_nstd_flag . _chem_comp.name 'FORMIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O1 FMT doub 83 n n C O2 FMT sing 84 n n C H FMT sing 85 n n O2 HO2 FMT sing 86 n n # _atom_sites.entry_id 5DUO _atom_sites.fract_transf_matrix[1][1] 0.017127 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003036 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010082 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010654 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 OLC A 1 201 201 OLC OLC . E 2 OLC A 1 202 203 OLC OLC . F 2 OLC A 1 203 205 OLC OLC . G 2 OLC A 1 204 209 OLC OLC . H 2 OLC A 1 205 218 OLC OLC . I 3 FMT A 1 206 301 FMT FMT . J 3 FMT A 1 207 302 FMT FMT . K 4 PP9 A 1 208 501 PP9 HMX . L 2 OLC B 1 201 210 OLC OLC . M 2 OLC B 1 202 215 OLC OLC . N 2 OLC B 1 203 217 OLC OLC . O 2 OLC B 1 204 219 OLC OLC . P 2 OLC B 1 205 220 OLC OLC . Q 2 OLC B 1 206 412 OLC OLC . R 2 OLC C 1 201 202 OLC OLC . S 2 OLC C 1 202 206 OLC OLC . T 2 OLC C 1 203 211 OLC OLC . U 2 OLC C 1 204 216 OLC OLC . V 5 HOH A 1 301 1064 HOH HOH . V 5 HOH A 2 302 1058 HOH HOH . V 5 HOH A 3 303 1056 HOH HOH . V 5 HOH A 4 304 1038 HOH HOH . V 5 HOH A 5 305 1010 HOH HOH . V 5 HOH A 6 306 1008 HOH HOH . V 5 HOH A 7 307 1045 HOH HOH . V 5 HOH A 8 308 1039 HOH HOH . V 5 HOH A 9 309 1001 HOH HOH . V 5 HOH A 10 310 1011 HOH HOH . V 5 HOH A 11 311 1048 HOH HOH . V 5 HOH A 12 312 1044 HOH HOH . V 5 HOH A 13 313 1040 HOH HOH . V 5 HOH A 14 314 1057 HOH HOH . V 5 HOH A 15 315 1063 HOH HOH . V 5 HOH A 16 316 1037 HOH HOH . V 5 HOH A 17 317 1025 HOH HOH . V 5 HOH A 18 318 1062 HOH HOH . V 5 HOH A 19 319 1046 HOH HOH . V 5 HOH A 20 320 1014 HOH HOH . V 5 HOH A 21 321 1016 HOH HOH . V 5 HOH A 22 322 1018 HOH HOH . V 5 HOH A 23 323 1065 HOH HOH . V 5 HOH A 24 324 1021 HOH HOH . V 5 HOH A 25 325 1066 HOH HOH . V 5 HOH A 26 326 1067 HOH HOH . V 5 HOH A 27 327 1050 HOH HOH . V 5 HOH A 28 328 1059 HOH HOH . W 5 HOH B 1 301 1061 HOH HOH . W 5 HOH B 2 302 1004 HOH HOH . W 5 HOH B 3 303 1007 HOH HOH . W 5 HOH B 4 304 1003 HOH HOH . W 5 HOH B 5 305 1002 HOH HOH . W 5 HOH B 6 306 1012 HOH HOH . W 5 HOH B 7 307 1052 HOH HOH . W 5 HOH B 8 308 1020 HOH HOH . W 5 HOH B 9 309 1019 HOH HOH . W 5 HOH B 10 310 1015 HOH HOH . W 5 HOH B 11 311 1035 HOH HOH . W 5 HOH B 12 312 1026 HOH HOH . W 5 HOH B 13 313 1023 HOH HOH . W 5 HOH B 14 314 1006 HOH HOH . W 5 HOH B 15 315 1042 HOH HOH . X 5 HOH C 1 301 1031 HOH HOH . X 5 HOH C 2 302 1080 HOH HOH . X 5 HOH C 3 303 1041 HOH HOH . X 5 HOH C 4 304 1027 HOH HOH . X 5 HOH C 5 305 1017 HOH HOH . X 5 HOH C 6 306 1005 HOH HOH . X 5 HOH C 7 307 1009 HOH HOH . X 5 HOH C 8 308 1043 HOH HOH . X 5 HOH C 9 309 1022 HOH HOH . X 5 HOH C 10 310 1051 HOH HOH . X 5 HOH C 11 311 1028 HOH HOH . X 5 HOH C 12 312 1024 HOH HOH . X 5 HOH C 13 313 1060 HOH HOH . X 5 HOH C 14 314 1079 HOH HOH . X 5 HOH C 15 315 1069 HOH HOH . X 5 HOH C 16 316 1073 HOH HOH . X 5 HOH C 17 317 1032 HOH HOH . X 5 HOH C 18 318 1074 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C FMT . . . J 3 7.408 58.06 35.287 1 48.83 ? C FMT 207 A 1 HETATM 2 O O1 FMT . . . J 3 7.133 59.186 34.852 1 49.63 ? O1 FMT 207 A 1 HETATM 3 O O2 FMT . . . J 3 8.306 57.308 34.87 1 40.53 ? O2 FMT 207 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 3 #