data_5DV6 # _model_server_result.job_id BYgWj6Bb1VfZbvfkl4rBkQ _model_server_result.datetime_utc '2024-11-23 11:36:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dv6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 5DV6 # _exptl.entry_id 5DV6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 178.145 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-methylidene-3-nitrobenzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5DV6 _cell.length_a 53.383 _cell.length_b 130.851 _cell.length_c 53.267 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DV6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 95 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 285 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id CAK _struct_conn.ptnr2_label_comp_id B4H _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id B4H _struct_conn.ptnr2_auth_seq_id 501 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.706 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H6 N2 O3' _chem_comp.formula_weight 178.145 _chem_comp.id B4H _chem_comp.mon_nstd_flag . _chem_comp.name N-methylidene-3-nitrobenzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAC NAN B4H doub 70 n n CAG CAF B4H doub 71 n y CAG CAL B4H sing 72 n y CAF CAK B4H sing 73 n y NAN CAL B4H sing 74 n n NAN OAD B4H sing 75 n n CAL CAH B4H doub 76 n y CAK CAM B4H doub 77 n y CAH CAM B4H sing 78 n y CAM CAJ B4H sing 79 n n CAJ OAB B4H doub 80 n n CAJ NAI B4H sing 81 n n NAI CAA B4H doub 82 n n CAH H1 B4H sing 83 n n CAG H2 B4H sing 84 n n CAF H3 B4H sing 85 n n CAK H4 B4H sing 86 n n CAA H6 B4H sing 87 n n CAA H7 B4H sing 88 n n # _atom_sites.entry_id 5DV6 _atom_sites.fract_transf_matrix[1][1] 0.018733 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007642 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018773 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 B4H A 1 501 501 B4H B4H . D 4 HOH A 1 601 625 HOH HOH . D 4 HOH A 2 602 623 HOH HOH . D 4 HOH A 3 603 612 HOH HOH . D 4 HOH A 4 604 618 HOH HOH . D 4 HOH A 5 605 614 HOH HOH . D 4 HOH A 6 606 630 HOH HOH . D 4 HOH A 7 607 627 HOH HOH . D 4 HOH A 8 608 629 HOH HOH . D 4 HOH A 9 609 605 HOH HOH . D 4 HOH A 10 610 621 HOH HOH . D 4 HOH A 11 611 613 HOH HOH . D 4 HOH A 12 612 603 HOH HOH . D 4 HOH A 13 613 620 HOH HOH . D 4 HOH A 14 614 602 HOH HOH . D 4 HOH A 15 615 616 HOH HOH . D 4 HOH A 16 616 631 HOH HOH . D 4 HOH A 17 617 632 HOH HOH . D 4 HOH A 18 618 619 HOH HOH . D 4 HOH A 19 619 609 HOH HOH . D 4 HOH A 20 620 611 HOH HOH . D 4 HOH A 21 621 628 HOH HOH . D 4 HOH A 22 622 606 HOH HOH . D 4 HOH A 23 623 626 HOH HOH . D 4 HOH A 24 624 608 HOH HOH . D 4 HOH A 25 625 617 HOH HOH . D 4 HOH A 26 626 607 HOH HOH . D 4 HOH A 27 627 622 HOH HOH . D 4 HOH A 28 628 610 HOH HOH . D 4 HOH A 29 629 604 HOH HOH . D 4 HOH A 30 630 601 HOH HOH . E 4 HOH B 1 801 615 HOH HOH . E 4 HOH B 2 802 624 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAC B4H . . . C 3 -9.763 18.48 2.283 1 112.05 ? OAC B4H 501 A 1 HETATM 2 N NAN B4H . . . C 3 -9.068 18.553 1.082 1 101.67 ? NAN B4H 501 A 1 HETATM 3 O OAD B4H . . . C 3 -9.428 17.771 0.002 1 112.6 ? OAD B4H 501 A 1 HETATM 4 C CAL B4H . . . C 3 -8.029 19.43 0.93 1 95.93 ? CAL B4H 501 A 1 HETATM 5 C CAH B4H . . . C 3 -7.222 19.309 -0.205 1 95.21 ? CAH B4H 501 A 1 HETATM 6 C CAG B4H . . . C 3 -7.826 20.399 1.909 1 93.36 ? CAG B4H 501 A 1 HETATM 7 C CAF B4H . . . C 3 -6.792 21.285 1.753 1 96.86 ? CAF B4H 501 A 1 HETATM 8 C CAK B4H . . . C 3 -5.973 21.197 0.628 1 94.55 ? CAK B4H 501 A 1 HETATM 9 C CAM B4H . . . C 3 -6.192 20.188 -0.361 1 100.06 ? CAM B4H 501 A 1 HETATM 10 C CAJ B4H . . . C 3 -5.215 20.236 -1.535 1 99.31 ? CAJ B4H 501 A 1 HETATM 11 O OAB B4H . . . C 3 -4.152 19.553 -1.58 1 88.32 ? OAB B4H 501 A 1 HETATM 12 N NAI B4H . . . C 3 -5.557 21.144 -2.476 1 98.3 ? NAI B4H 501 A 1 HETATM 13 C CAA B4H . . . C 3 -4.662 21.619 -3.593 1 93.58 ? CAA B4H 501 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #