data_5DVF
#
_model_server_result.job_id            YGwMA9VlEVcTx88uCaOnkQ 
_model_server_result.datetime_utc      '2024-11-05 09:24:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5dvf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":501}' 
#
_entry.id    5DVF 
#
_exptl.entry_id    5DVF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              96.063 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SULFATE ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5DVF 
_cell.length_a            84.44 
_cell.length_b            154.62 
_cell.length_c            60.57 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5DVF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 286 A CYS 288 1_555 A SG CYS 354 A CYS 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? 
disulf ? disulf2 B SG CYS 286 B CYS 288 1_555 B SG CYS 354 B CYS 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? 
#
_chem_comp.formula           'O4 S -2' 
_chem_comp.formula_weight    96.063 
_chem_comp.id                SO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SULFATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5DVF 
_atom_sites.fract_transf_matrix[1][1]    0.011843 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006467 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01651 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 A 1 501 1 SO4 SO4 . 
D 2 SO4 B 1 501 2 SO4 SO4 . 
E 3 HOH A 1 601 177 HOH HOH . 
E 3 HOH A 2 602 163 HOH HOH . 
E 3 HOH A 3 603 13 HOH HOH . 
E 3 HOH A 4 604 105 HOH HOH . 
E 3 HOH A 5 605 25 HOH HOH . 
E 3 HOH A 6 606 106 HOH HOH . 
E 3 HOH A 7 607 8 HOH HOH . 
E 3 HOH A 8 608 14 HOH HOH . 
E 3 HOH A 9 609 67 HOH HOH . 
E 3 HOH A 10 610 18 HOH HOH . 
E 3 HOH A 11 611 55 HOH HOH . 
E 3 HOH A 12 612 66 HOH HOH . 
E 3 HOH A 13 613 1 HOH HOH . 
E 3 HOH A 14 614 4 HOH HOH . 
E 3 HOH A 15 615 65 HOH HOH . 
E 3 HOH A 16 616 38 HOH HOH . 
E 3 HOH A 17 617 190 HOH HOH . 
E 3 HOH A 18 618 121 HOH HOH . 
E 3 HOH A 19 619 194 HOH HOH . 
E 3 HOH A 20 620 52 HOH HOH . 
E 3 HOH A 21 621 82 HOH HOH . 
E 3 HOH A 22 622 85 HOH HOH . 
E 3 HOH A 23 623 5 HOH HOH . 
E 3 HOH A 24 624 198 HOH HOH . 
E 3 HOH A 25 625 3 HOH HOH . 
E 3 HOH A 26 626 16 HOH HOH . 
E 3 HOH A 27 627 156 HOH HOH . 
E 3 HOH A 28 628 185 HOH HOH . 
E 3 HOH A 29 629 187 HOH HOH . 
E 3 HOH A 30 630 56 HOH HOH . 
E 3 HOH A 31 631 48 HOH HOH . 
E 3 HOH A 32 632 24 HOH HOH . 
E 3 HOH A 33 633 83 HOH HOH . 
E 3 HOH A 34 634 64 HOH HOH . 
E 3 HOH A 35 635 27 HOH HOH . 
E 3 HOH A 36 636 168 HOH HOH . 
E 3 HOH A 37 637 113 HOH HOH . 
E 3 HOH A 38 638 176 HOH HOH . 
E 3 HOH A 39 639 107 HOH HOH . 
E 3 HOH A 40 640 155 HOH HOH . 
E 3 HOH A 41 641 199 HOH HOH . 
E 3 HOH A 42 642 186 HOH HOH . 
E 3 HOH A 43 643 184 HOH HOH . 
E 3 HOH A 44 644 109 HOH HOH . 
E 3 HOH A 45 645 32 HOH HOH . 
E 3 HOH A 46 646 69 HOH HOH . 
E 3 HOH A 47 647 125 HOH HOH . 
E 3 HOH A 48 648 175 HOH HOH . 
E 3 HOH A 49 649 35 HOH HOH . 
E 3 HOH A 50 650 110 HOH HOH . 
E 3 HOH A 51 651 195 HOH HOH . 
E 3 HOH A 52 652 53 HOH HOH . 
E 3 HOH A 53 653 11 HOH HOH . 
E 3 HOH A 54 654 40 HOH HOH . 
E 3 HOH A 55 655 118 HOH HOH . 
E 3 HOH A 56 656 6 HOH HOH . 
E 3 HOH A 57 657 149 HOH HOH . 
E 3 HOH A 58 658 19 HOH HOH . 
E 3 HOH A 59 659 154 HOH HOH . 
E 3 HOH A 60 660 26 HOH HOH . 
E 3 HOH A 61 661 167 HOH HOH . 
E 3 HOH A 62 662 201 HOH HOH . 
E 3 HOH A 63 663 33 HOH HOH . 
E 3 HOH A 64 664 169 HOH HOH . 
E 3 HOH A 65 665 79 HOH HOH . 
E 3 HOH A 66 666 196 HOH HOH . 
E 3 HOH A 67 667 7 HOH HOH . 
E 3 HOH A 68 668 174 HOH HOH . 
E 3 HOH A 69 669 147 HOH HOH . 
E 3 HOH A 70 670 108 HOH HOH . 
E 3 HOH A 71 671 191 HOH HOH . 
E 3 HOH A 72 672 172 HOH HOH . 
E 3 HOH A 73 673 34 HOH HOH . 
E 3 HOH A 74 674 28 HOH HOH . 
E 3 HOH A 75 675 73 HOH HOH . 
E 3 HOH A 76 676 148 HOH HOH . 
E 3 HOH A 77 677 133 HOH HOH . 
E 3 HOH A 78 678 78 HOH HOH . 
E 3 HOH A 79 679 189 HOH HOH . 
E 3 HOH A 80 680 88 HOH HOH . 
E 3 HOH A 81 681 120 HOH HOH . 
E 3 HOH A 82 682 75 HOH HOH . 
E 3 HOH A 83 683 183 HOH HOH . 
E 3 HOH A 84 684 87 HOH HOH . 
E 3 HOH A 85 685 181 HOH HOH . 
E 3 HOH A 86 686 77 HOH HOH . 
E 3 HOH A 87 687 179 HOH HOH . 
E 3 HOH A 88 688 171 HOH HOH . 
E 3 HOH A 89 689 170 HOH HOH . 
E 3 HOH A 90 690 160 HOH HOH . 
E 3 HOH A 91 691 150 HOH HOH . 
E 3 HOH A 92 692 161 HOH HOH . 
E 3 HOH A 93 693 145 HOH HOH . 
E 3 HOH A 94 694 131 HOH HOH . 
E 3 HOH A 95 695 103 HOH HOH . 
E 3 HOH A 96 696 136 HOH HOH . 
E 3 HOH A 97 697 193 HOH HOH . 
E 3 HOH A 98 698 203 HOH HOH . 
E 3 HOH A 99 699 81 HOH HOH . 
E 3 HOH A 100 700 151 HOH HOH . 
E 3 HOH A 101 701 165 HOH HOH . 
E 3 HOH A 102 702 80 HOH HOH . 
E 3 HOH A 103 703 86 HOH HOH . 
E 3 HOH A 104 704 180 HOH HOH . 
E 3 HOH A 105 705 153 HOH HOH . 
E 3 HOH A 106 706 202 HOH HOH . 
E 3 HOH A 107 707 68 HOH HOH . 
E 3 HOH A 108 708 128 HOH HOH . 
E 3 HOH A 109 709 178 HOH HOH . 
E 3 HOH A 110 710 127 HOH HOH . 
E 3 HOH A 111 711 166 HOH HOH . 
E 3 HOH A 112 712 200 HOH HOH . 
E 3 HOH A 113 713 143 HOH HOH . 
E 3 HOH A 114 714 164 HOH HOH . 
E 3 HOH A 115 715 126 HOH HOH . 
E 3 HOH A 116 716 157 HOH HOH . 
E 3 HOH A 117 717 188 HOH HOH . 
E 3 HOH A 118 718 104 HOH HOH . 
E 3 HOH A 119 719 182 HOH HOH . 
E 3 HOH A 120 720 146 HOH HOH . 
E 3 HOH A 121 721 89 HOH HOH . 
E 3 HOH A 122 722 84 HOH HOH . 
E 3 HOH A 123 723 129 HOH HOH . 
E 3 HOH A 124 724 158 HOH HOH . 
F 3 HOH B 1 601 235 HOH HOH . 
F 3 HOH B 2 602 204 HOH HOH . 
F 3 HOH B 3 603 210 HOH HOH . 
F 3 HOH B 4 604 221 HOH HOH . 
F 3 HOH B 5 605 239 HOH HOH . 
F 3 HOH B 6 606 37 HOH HOH . 
F 3 HOH B 7 607 36 HOH HOH . 
F 3 HOH B 8 608 211 HOH HOH . 
F 3 HOH B 9 609 15 HOH HOH . 
F 3 HOH B 10 610 222 HOH HOH . 
F 3 HOH B 11 611 2 HOH HOH . 
F 3 HOH B 12 612 111 HOH HOH . 
F 3 HOH B 13 613 31 HOH HOH . 
F 3 HOH B 14 614 57 HOH HOH . 
F 3 HOH B 15 615 230 HOH HOH . 
F 3 HOH B 16 616 46 HOH HOH . 
F 3 HOH B 17 617 43 HOH HOH . 
F 3 HOH B 18 618 119 HOH HOH . 
F 3 HOH B 19 619 60 HOH HOH . 
F 3 HOH B 20 620 98 HOH HOH . 
F 3 HOH B 21 621 114 HOH HOH . 
F 3 HOH B 22 622 23 HOH HOH . 
F 3 HOH B 23 623 59 HOH HOH . 
F 3 HOH B 24 624 29 HOH HOH . 
F 3 HOH B 25 625 47 HOH HOH . 
F 3 HOH B 26 626 219 HOH HOH . 
F 3 HOH B 27 627 49 HOH HOH . 
F 3 HOH B 28 628 51 HOH HOH . 
F 3 HOH B 29 629 20 HOH HOH . 
F 3 HOH B 30 630 134 HOH HOH . 
F 3 HOH B 31 631 220 HOH HOH . 
F 3 HOH B 32 632 12 HOH HOH . 
F 3 HOH B 33 633 162 HOH HOH . 
F 3 HOH B 34 634 58 HOH HOH . 
F 3 HOH B 35 635 21 HOH HOH . 
F 3 HOH B 36 636 50 HOH HOH . 
F 3 HOH B 37 637 132 HOH HOH . 
F 3 HOH B 38 638 42 HOH HOH . 
F 3 HOH B 39 639 144 HOH HOH . 
F 3 HOH B 40 640 232 HOH HOH . 
F 3 HOH B 41 641 41 HOH HOH . 
F 3 HOH B 42 642 54 HOH HOH . 
F 3 HOH B 43 643 10 HOH HOH . 
F 3 HOH B 44 644 96 HOH HOH . 
F 3 HOH B 45 645 9 HOH HOH . 
F 3 HOH B 46 646 63 HOH HOH . 
F 3 HOH B 47 647 39 HOH HOH . 
F 3 HOH B 48 648 218 HOH HOH . 
F 3 HOH B 49 649 92 HOH HOH . 
F 3 HOH B 50 650 44 HOH HOH . 
F 3 HOH B 51 651 137 HOH HOH . 
F 3 HOH B 52 652 17 HOH HOH . 
F 3 HOH B 53 653 62 HOH HOH . 
F 3 HOH B 54 654 238 HOH HOH . 
F 3 HOH B 55 655 117 HOH HOH . 
F 3 HOH B 56 656 22 HOH HOH . 
F 3 HOH B 57 657 61 HOH HOH . 
F 3 HOH B 58 658 30 HOH HOH . 
F 3 HOH B 59 659 233 HOH HOH . 
F 3 HOH B 60 660 115 HOH HOH . 
F 3 HOH B 61 661 223 HOH HOH . 
F 3 HOH B 62 662 72 HOH HOH . 
F 3 HOH B 63 663 94 HOH HOH . 
F 3 HOH B 64 664 226 HOH HOH . 
F 3 HOH B 65 665 45 HOH HOH . 
F 3 HOH B 66 666 208 HOH HOH . 
F 3 HOH B 67 667 71 HOH HOH . 
F 3 HOH B 68 668 234 HOH HOH . 
F 3 HOH B 69 669 124 HOH HOH . 
F 3 HOH B 70 670 140 HOH HOH . 
F 3 HOH B 71 671 102 HOH HOH . 
F 3 HOH B 72 672 141 HOH HOH . 
F 3 HOH B 73 673 91 HOH HOH . 
F 3 HOH B 74 674 97 HOH HOH . 
F 3 HOH B 75 675 112 HOH HOH . 
F 3 HOH B 76 676 215 HOH HOH . 
F 3 HOH B 77 677 100 HOH HOH . 
F 3 HOH B 78 678 206 HOH HOH . 
F 3 HOH B 79 679 217 HOH HOH . 
F 3 HOH B 80 680 138 HOH HOH . 
F 3 HOH B 81 681 74 HOH HOH . 
F 3 HOH B 82 682 231 HOH HOH . 
F 3 HOH B 83 683 122 HOH HOH . 
F 3 HOH B 84 684 139 HOH HOH . 
F 3 HOH B 85 685 95 HOH HOH . 
F 3 HOH B 86 686 76 HOH HOH . 
F 3 HOH B 87 687 101 HOH HOH . 
F 3 HOH B 88 688 216 HOH HOH . 
F 3 HOH B 89 689 116 HOH HOH . 
F 3 HOH B 90 690 70 HOH HOH . 
F 3 HOH B 91 691 99 HOH HOH . 
F 3 HOH B 92 692 237 HOH HOH . 
F 3 HOH B 93 693 214 HOH HOH . 
F 3 HOH B 94 694 229 HOH HOH . 
F 3 HOH B 95 695 228 HOH HOH . 
F 3 HOH B 96 696 225 HOH HOH . 
F 3 HOH B 97 697 227 HOH HOH . 
F 3 HOH B 98 698 213 HOH HOH . 
F 3 HOH B 99 699 209 HOH HOH . 
F 3 HOH B 100 700 205 HOH HOH . 
F 3 HOH B 101 701 93 HOH HOH . 
F 3 HOH B 102 702 130 HOH HOH . 
F 3 HOH B 103 703 173 HOH HOH . 
F 3 HOH B 104 704 197 HOH HOH . 
F 3 HOH B 105 705 142 HOH HOH . 
F 3 HOH B 106 706 224 HOH HOH . 
F 3 HOH B 107 707 212 HOH HOH . 
F 3 HOH B 108 708 90 HOH HOH . 
F 3 HOH B 109 709 159 HOH HOH . 
F 3 HOH B 110 710 135 HOH HOH . 
F 3 HOH B 111 711 236 HOH HOH . 
F 3 HOH B 112 712 123 HOH HOH . 
F 3 HOH B 113 713 207 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S SO4 . . . C 2 124.809 167.121 48.917 1 49.11 ? S SO4 501 A 1 
HETATM 2 O O1 SO4 . . . C 2 124.249 166.255 47.851 1 42.52 ? O1 SO4 501 A 1 
HETATM 3 O O2 SO4 . . . C 2 124.967 168.498 48.366 1 42.48 ? O2 SO4 501 A 1 
HETATM 4 O O3 SO4 . . . C 2 126.113 166.545 49.325 1 47.78 ? O3 SO4 501 A 1 
HETATM 5 O O4 SO4 . . . C 2 123.966 167.184 50.149 1 44.73 ? O4 SO4 501 A 1 
#
_model_server_stats.io_time_ms              63 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           5 
#