data_5DVO # _model_server_result.job_id hyh_9_JkcmGdVitRotkCEA _model_server_result.datetime_utc '2024-11-25 16:41:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dvo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 5DVO # _exptl.entry_id 5DVO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5DVO _cell.length_a 71.657 _cell.length_b 71.657 _cell.length_c 100.785 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DVO _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 41 A CYS 261 1_555 A SG CYS 101 A CYS 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 147 A CYS 367 1_555 A SG CYS 205 A CYS 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf3 B SG CYS 41 B CYS 261 1_555 B SG CYS 101 B CYS 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf4 B SG CYS 147 B CYS 367 1_555 B SG CYS 205 B CYS 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 290 n n S O2 SO4 doub 291 n n S O3 SO4 sing 292 n n S O4 SO4 sing 293 n n # _atom_sites.entry_id 5DVO _atom_sites.fract_transf_matrix[1][1] 0.013955 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013955 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009922 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 501 1 SO4 SO4 . D 2 SO4 B 1 501 2 SO4 SO4 . E 3 HOH A 1 601 60 HOH HOH . E 3 HOH A 2 602 126 HOH HOH . E 3 HOH A 3 603 95 HOH HOH . E 3 HOH A 4 604 13 HOH HOH . E 3 HOH A 5 605 50 HOH HOH . E 3 HOH A 6 606 134 HOH HOH . E 3 HOH A 7 607 101 HOH HOH . E 3 HOH A 8 608 128 HOH HOH . E 3 HOH A 9 609 93 HOH HOH . E 3 HOH A 10 610 6 HOH HOH . E 3 HOH A 11 611 124 HOH HOH . E 3 HOH A 12 612 62 HOH HOH . E 3 HOH A 13 613 37 HOH HOH . E 3 HOH A 14 614 5 HOH HOH . E 3 HOH A 15 615 1 HOH HOH . E 3 HOH A 16 616 24 HOH HOH . E 3 HOH A 17 617 87 HOH HOH . E 3 HOH A 18 618 103 HOH HOH . E 3 HOH A 19 619 72 HOH HOH . E 3 HOH A 20 620 31 HOH HOH . E 3 HOH A 21 621 141 HOH HOH . E 3 HOH A 22 622 88 HOH HOH . E 3 HOH A 23 623 105 HOH HOH . E 3 HOH A 24 624 11 HOH HOH . E 3 HOH A 25 625 68 HOH HOH . E 3 HOH A 26 626 66 HOH HOH . E 3 HOH A 27 627 45 HOH HOH . E 3 HOH A 28 628 8 HOH HOH . E 3 HOH A 29 629 52 HOH HOH . E 3 HOH A 30 630 112 HOH HOH . E 3 HOH A 31 631 23 HOH HOH . E 3 HOH A 32 632 119 HOH HOH . E 3 HOH A 33 633 10 HOH HOH . E 3 HOH A 34 634 29 HOH HOH . E 3 HOH A 35 635 51 HOH HOH . E 3 HOH A 36 636 97 HOH HOH . E 3 HOH A 37 637 22 HOH HOH . E 3 HOH A 38 638 127 HOH HOH . E 3 HOH A 39 639 121 HOH HOH . E 3 HOH A 40 640 55 HOH HOH . E 3 HOH A 41 641 115 HOH HOH . E 3 HOH A 42 642 56 HOH HOH . E 3 HOH A 43 643 27 HOH HOH . E 3 HOH A 44 644 28 HOH HOH . E 3 HOH A 45 645 42 HOH HOH . E 3 HOH A 46 646 18 HOH HOH . E 3 HOH A 47 647 73 HOH HOH . E 3 HOH A 48 648 111 HOH HOH . E 3 HOH A 49 649 92 HOH HOH . E 3 HOH A 50 650 84 HOH HOH . E 3 HOH A 51 651 76 HOH HOH . E 3 HOH A 52 652 21 HOH HOH . E 3 HOH A 53 653 120 HOH HOH . E 3 HOH A 54 654 133 HOH HOH . E 3 HOH A 55 655 102 HOH HOH . E 3 HOH A 56 656 135 HOH HOH . E 3 HOH A 57 657 32 HOH HOH . E 3 HOH A 58 658 81 HOH HOH . E 3 HOH A 59 659 142 HOH HOH . E 3 HOH A 60 660 136 HOH HOH . E 3 HOH A 61 661 91 HOH HOH . E 3 HOH A 62 662 15 HOH HOH . E 3 HOH A 63 663 96 HOH HOH . E 3 HOH A 64 664 25 HOH HOH . E 3 HOH A 65 665 122 HOH HOH . E 3 HOH A 66 666 98 HOH HOH . F 3 HOH B 1 601 114 HOH HOH . F 3 HOH B 2 602 12 HOH HOH . F 3 HOH B 3 603 14 HOH HOH . F 3 HOH B 4 604 75 HOH HOH . F 3 HOH B 5 605 110 HOH HOH . F 3 HOH B 6 606 131 HOH HOH . F 3 HOH B 7 607 48 HOH HOH . F 3 HOH B 8 608 67 HOH HOH . F 3 HOH B 9 609 94 HOH HOH . F 3 HOH B 10 610 2 HOH HOH . F 3 HOH B 11 611 107 HOH HOH . F 3 HOH B 12 612 77 HOH HOH . F 3 HOH B 13 613 41 HOH HOH . F 3 HOH B 14 614 38 HOH HOH . F 3 HOH B 15 615 47 HOH HOH . F 3 HOH B 16 616 86 HOH HOH . F 3 HOH B 17 617 57 HOH HOH . F 3 HOH B 18 618 7 HOH HOH . F 3 HOH B 19 619 19 HOH HOH . F 3 HOH B 20 620 74 HOH HOH . F 3 HOH B 21 621 137 HOH HOH . F 3 HOH B 22 622 34 HOH HOH . F 3 HOH B 23 623 70 HOH HOH . F 3 HOH B 24 624 9 HOH HOH . F 3 HOH B 25 625 26 HOH HOH . F 3 HOH B 26 626 104 HOH HOH . F 3 HOH B 27 627 3 HOH HOH . F 3 HOH B 28 628 4 HOH HOH . F 3 HOH B 29 629 39 HOH HOH . F 3 HOH B 30 630 58 HOH HOH . F 3 HOH B 31 631 36 HOH HOH . F 3 HOH B 32 632 69 HOH HOH . F 3 HOH B 33 633 17 HOH HOH . F 3 HOH B 34 634 16 HOH HOH . F 3 HOH B 35 635 20 HOH HOH . F 3 HOH B 36 636 64 HOH HOH . F 3 HOH B 37 637 139 HOH HOH . F 3 HOH B 38 638 59 HOH HOH . F 3 HOH B 39 639 79 HOH HOH . F 3 HOH B 40 640 123 HOH HOH . F 3 HOH B 41 641 43 HOH HOH . F 3 HOH B 42 642 138 HOH HOH . F 3 HOH B 43 643 89 HOH HOH . F 3 HOH B 44 644 129 HOH HOH . F 3 HOH B 45 645 46 HOH HOH . F 3 HOH B 46 646 140 HOH HOH . F 3 HOH B 47 647 117 HOH HOH . F 3 HOH B 48 648 71 HOH HOH . F 3 HOH B 49 649 132 HOH HOH . F 3 HOH B 50 650 108 HOH HOH . F 3 HOH B 51 651 85 HOH HOH . F 3 HOH B 52 652 33 HOH HOH . F 3 HOH B 53 653 44 HOH HOH . F 3 HOH B 54 654 61 HOH HOH . F 3 HOH B 55 655 63 HOH HOH . F 3 HOH B 56 656 125 HOH HOH . F 3 HOH B 57 657 54 HOH HOH . F 3 HOH B 58 658 30 HOH HOH . F 3 HOH B 59 659 40 HOH HOH . F 3 HOH B 60 660 100 HOH HOH . F 3 HOH B 61 661 83 HOH HOH . F 3 HOH B 62 662 65 HOH HOH . F 3 HOH B 63 663 78 HOH HOH . F 3 HOH B 64 664 53 HOH HOH . F 3 HOH B 65 665 80 HOH HOH . F 3 HOH B 66 666 116 HOH HOH . F 3 HOH B 67 667 130 HOH HOH . F 3 HOH B 68 668 35 HOH HOH . F 3 HOH B 69 669 106 HOH HOH . F 3 HOH B 70 670 82 HOH HOH . F 3 HOH B 71 671 90 HOH HOH . F 3 HOH B 72 672 49 HOH HOH . F 3 HOH B 73 673 99 HOH HOH . F 3 HOH B 74 674 118 HOH HOH . F 3 HOH B 75 675 113 HOH HOH . F 3 HOH B 76 676 109 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . C 2 -5.944 8.593 -10.911 1 59.06 ? S SO4 501 A 1 HETATM 2 O O1 SO4 . . . C 2 -5.861 9.848 -11.702 1 49.66 ? O1 SO4 501 A 1 HETATM 3 O O2 SO4 . . . C 2 -6.564 7.54 -11.748 1 54.35 ? O2 SO4 501 A 1 HETATM 4 O O3 SO4 . . . C 2 -6.781 8.855 -9.718 1 63.06 ? O3 SO4 501 A 1 HETATM 5 O O4 SO4 . . . C 2 -4.599 8.122 -10.47 1 53.1 ? O4 SO4 501 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 5 #