data_5DVS # _model_server_result.job_id nKzDVPHEveL91PupDYdDsA _model_server_result.datetime_utc '2024-11-25 13:16:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dvs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":900}' # _entry.id 5DVS # _exptl.entry_id 5DVS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 303.354 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "4,4'-[(2-methylphenyl)carbonimidoyl]diphenol" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.61 _cell.angle_gamma 90 _cell.entry_id 5DVS _cell.length_a 55.8 _cell.length_b 82.638 _cell.length_c 58.482 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DVS _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C20 H17 N O2' _chem_comp.formula_weight 303.354 _chem_comp.id 5G7 _chem_comp.mon_nstd_flag . _chem_comp.name "4,4'-[(2-methylphenyl)carbonimidoyl]diphenol" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C21 C22 5G7 doub 1 n y C21 C20 5G7 sing 2 n y C22 C23 5G7 sing 3 n y C20 C18 5G7 doub 4 n y C23 C17 5G7 doub 5 n y C18 C17 5G7 sing 6 n y C18 C19 5G7 sing 7 n n C17 N16 5G7 sing 8 n n N16 C08 5G7 doub 9 n n O13 C12 5G7 sing 10 n n C12 C14 5G7 doub 11 n y C12 C11 5G7 sing 12 n y C14 C15 5G7 sing 13 n y C11 C10 5G7 doub 14 n y C15 C09 5G7 doub 15 n y C10 C09 5G7 sing 16 n y C09 C08 5G7 sing 17 n n C08 C07 5G7 sing 18 n n C07 C04 5G7 doub 19 n y C07 C06 5G7 sing 20 n y C04 C03 5G7 sing 21 n y C06 C05 5G7 doub 22 n y C03 C02 5G7 doub 23 n y C05 C02 5G7 sing 24 n y C02 O01 5G7 sing 25 n n O01 H1 5G7 sing 26 n n C03 H2 5G7 sing 27 n n C04 H3 5G7 sing 28 n n C05 H4 5G7 sing 29 n n C06 H5 5G7 sing 30 n n C10 H7 5G7 sing 31 n n C11 H8 5G7 sing 32 n n O13 H9 5G7 sing 33 n n C14 H10 5G7 sing 34 n n C15 H11 5G7 sing 35 n n C19 H13 5G7 sing 36 n n C19 H14 5G7 sing 37 n n C19 H15 5G7 sing 38 n n C20 H16 5G7 sing 39 n n C21 H17 5G7 sing 40 n n C22 H18 5G7 sing 41 n n C23 H19 5G7 sing 42 n n # _atom_sites.entry_id 5DVS _atom_sites.fract_transf_matrix[1][1] 0.017921 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00674 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012101 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018268 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 5G7 A 1 900 900 5G7 5G7 . F 3 5G7 B 1 901 901 5G7 5G7 . G 4 HOH A 1 1001 1001 HOH HOH . G 4 HOH A 2 1002 1002 HOH HOH . G 4 HOH A 3 1003 1003 HOH HOH . G 4 HOH A 4 1004 1004 HOH HOH . G 4 HOH A 5 1005 1006 HOH HOH . G 4 HOH A 6 1006 1007 HOH HOH . G 4 HOH A 7 1007 1005 HOH HOH . G 4 HOH A 8 1008 1008 HOH HOH . G 4 HOH A 9 1009 1009 HOH HOH . G 4 HOH A 10 1010 1011 HOH HOH . G 4 HOH A 11 1011 1010 HOH HOH . G 4 HOH A 12 1012 1013 HOH HOH . G 4 HOH A 13 1013 1012 HOH HOH . G 4 HOH A 14 1014 1014 HOH HOH . G 4 HOH A 15 1015 1016 HOH HOH . G 4 HOH A 16 1016 1019 HOH HOH . G 4 HOH A 17 1017 1015 HOH HOH . G 4 HOH A 18 1018 1020 HOH HOH . G 4 HOH A 19 1019 1018 HOH HOH . G 4 HOH A 20 1020 1021 HOH HOH . G 4 HOH A 21 1021 1017 HOH HOH . G 4 HOH A 22 1022 1022 HOH HOH . G 4 HOH A 23 1023 1024 HOH HOH . G 4 HOH A 24 1024 1023 HOH HOH . G 4 HOH A 25 1025 1025 HOH HOH . G 4 HOH A 26 1026 1026 HOH HOH . G 4 HOH A 27 1027 1027 HOH HOH . G 4 HOH A 28 1028 1029 HOH HOH . G 4 HOH A 29 1029 1028 HOH HOH . G 4 HOH A 30 1030 1030 HOH HOH . G 4 HOH A 31 1031 1032 HOH HOH . G 4 HOH A 32 1032 1033 HOH HOH . G 4 HOH A 33 1033 1031 HOH HOH . G 4 HOH A 34 1034 1021 HOH HOH . G 4 HOH A 35 1035 1034 HOH HOH . G 4 HOH A 36 1036 1035 HOH HOH . G 4 HOH A 37 1037 1036 HOH HOH . G 4 HOH A 38 1038 1037 HOH HOH . G 4 HOH A 39 1039 1039 HOH HOH . G 4 HOH A 40 1040 1040 HOH HOH . H 4 HOH B 1 1001 1001 HOH HOH . H 4 HOH B 2 1002 1004 HOH HOH . H 4 HOH B 3 1003 1003 HOH HOH . H 4 HOH B 4 1004 1002 HOH HOH . H 4 HOH B 5 1005 1007 HOH HOH . H 4 HOH B 6 1006 1005 HOH HOH . H 4 HOH B 7 1007 1008 HOH HOH . H 4 HOH B 8 1008 1006 HOH HOH . H 4 HOH B 9 1009 1009 HOH HOH . H 4 HOH B 10 1010 1010 HOH HOH . H 4 HOH B 11 1011 1011 HOH HOH . H 4 HOH B 12 1012 1012 HOH HOH . H 4 HOH B 13 1013 1016 HOH HOH . H 4 HOH B 14 1014 1015 HOH HOH . H 4 HOH B 15 1015 1014 HOH HOH . H 4 HOH B 16 1016 1017 HOH HOH . H 4 HOH B 17 1017 1018 HOH HOH . H 4 HOH B 18 1018 1019 HOH HOH . H 4 HOH B 19 1019 1020 HOH HOH . H 4 HOH B 20 1020 1022 HOH HOH . H 4 HOH B 21 1021 1023 HOH HOH . H 4 HOH B 22 1022 1024 HOH HOH . H 4 HOH B 23 1023 1025 HOH HOH . H 4 HOH B 24 1024 1026 HOH HOH . H 4 HOH B 25 1025 1027 HOH HOH . H 4 HOH B 26 1026 1028 HOH HOH . H 4 HOH B 27 1027 1030 HOH HOH . H 4 HOH B 28 1028 1029 HOH HOH . H 4 HOH B 29 1029 1031 HOH HOH . H 4 HOH B 30 1030 1013 HOH HOH . H 4 HOH B 31 1031 1032 HOH HOH . H 4 HOH B 32 1032 1033 HOH HOH . H 4 HOH B 33 1033 1034 HOH HOH . I 4 HOH C 1 701 701 HOH HOH . I 4 HOH C 2 702 702 HOH HOH . I 4 HOH C 3 703 1038 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O01 5G7 . . . E 3 -16.307 -23.887 0.093 1 37.15 ? O01 5G7 900 A 1 HETATM 2 C C02 5G7 . . . E 3 -16.98 -24.418 -1.001 1 38.02 ? C02 5G7 900 A 1 HETATM 3 C C03 5G7 . . . E 3 -16.246 -24.763 -2.154 1 37.83 ? C03 5G7 900 A 1 HETATM 4 C C04 5G7 . . . E 3 -16.934 -25.319 -3.307 1 38.24 ? C04 5G7 900 A 1 HETATM 5 C C05 5G7 . . . E 3 -18.336 -24.603 -0.961 1 38.83 ? C05 5G7 900 A 1 HETATM 6 C C06 5G7 . . . E 3 -19.021 -25.158 -2.107 1 39.56 ? C06 5G7 900 A 1 HETATM 7 C C07 5G7 . . . E 3 -18.276 -25.502 -3.276 1 39.54 ? C07 5G7 900 A 1 HETATM 8 C C08 5G7 . . . E 3 -18.97 -26.092 -4.495 1 39.86 ? C08 5G7 900 A 1 HETATM 9 C C09 5G7 . . . E 3 -20.377 -25.544 -4.725 1 39.68 ? C09 5G7 900 A 1 HETATM 10 C C10 5G7 . . . E 3 -21.43 -26.468 -4.817 1 40.99 ? C10 5G7 900 A 1 HETATM 11 C C11 5G7 . . . E 3 -22.755 -26.015 -5.03 1 41.24 ? C11 5G7 900 A 1 HETATM 12 C C12 5G7 . . . E 3 -23.018 -24.661 -5.156 1 40.28 ? C12 5G7 900 A 1 HETATM 13 O O13 5G7 . . . E 3 -24.366 -24.237 -5.37 1 40.31 ? O13 5G7 900 A 1 HETATM 14 C C14 5G7 . . . E 3 -21.952 -23.71 -5.071 1 39.18 ? C14 5G7 900 A 1 HETATM 15 C C15 5G7 . . . E 3 -20.642 -24.14 -4.861 1 38.85 ? C15 5G7 900 A 1 HETATM 16 N N16 5G7 . . . E 3 -18.169 -26.052 -5.614 1 40.94 ? N16 5G7 900 A 1 HETATM 17 C C17 5G7 . . . E 3 -18.599 -26.634 -6.846 1 42.06 ? C17 5G7 900 A 1 HETATM 18 C C18 5G7 . . . E 3 -18.305 -28.016 -7.148 1 43.62 ? C18 5G7 900 A 1 HETATM 19 C C19 5G7 . . . E 3 -17.566 -28.874 -6.193 1 44.02 ? C19 5G7 900 A 1 HETATM 20 C C20 5G7 . . . E 3 -18.723 -28.555 -8.347 1 44.16 ? C20 5G7 900 A 1 HETATM 21 C C21 5G7 . . . E 3 -19.423 -27.769 -9.271 1 43.16 ? C21 5G7 900 A 1 HETATM 22 C C22 5G7 . . . E 3 -19.701 -26.439 -8.984 1 43.04 ? C22 5G7 900 A 1 HETATM 23 C C23 5G7 . . . E 3 -19.27 -25.879 -7.747 1 42.67 ? C23 5G7 900 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 23 #