data_5DVS # _model_server_result.job_id 3_6_YgFW1wbMFCnxQbQ9ng _model_server_result.datetime_utc '2024-11-25 13:33:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dvs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":901}' # _entry.id 5DVS # _exptl.entry_id 5DVS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 303.354 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "4,4'-[(2-methylphenyl)carbonimidoyl]diphenol" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.61 _cell.angle_gamma 90 _cell.entry_id 5DVS _cell.length_a 55.8 _cell.length_b 82.638 _cell.length_c 58.482 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DVS _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C20 H17 N O2' _chem_comp.formula_weight 303.354 _chem_comp.id 5G7 _chem_comp.mon_nstd_flag . _chem_comp.name "4,4'-[(2-methylphenyl)carbonimidoyl]diphenol" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C21 C22 5G7 doub 1 n y C21 C20 5G7 sing 2 n y C22 C23 5G7 sing 3 n y C20 C18 5G7 doub 4 n y C23 C17 5G7 doub 5 n y C18 C17 5G7 sing 6 n y C18 C19 5G7 sing 7 n n C17 N16 5G7 sing 8 n n N16 C08 5G7 doub 9 n n O13 C12 5G7 sing 10 n n C12 C14 5G7 doub 11 n y C12 C11 5G7 sing 12 n y C14 C15 5G7 sing 13 n y C11 C10 5G7 doub 14 n y C15 C09 5G7 doub 15 n y C10 C09 5G7 sing 16 n y C09 C08 5G7 sing 17 n n C08 C07 5G7 sing 18 n n C07 C04 5G7 doub 19 n y C07 C06 5G7 sing 20 n y C04 C03 5G7 sing 21 n y C06 C05 5G7 doub 22 n y C03 C02 5G7 doub 23 n y C05 C02 5G7 sing 24 n y C02 O01 5G7 sing 25 n n O01 H1 5G7 sing 26 n n C03 H2 5G7 sing 27 n n C04 H3 5G7 sing 28 n n C05 H4 5G7 sing 29 n n C06 H5 5G7 sing 30 n n C10 H7 5G7 sing 31 n n C11 H8 5G7 sing 32 n n O13 H9 5G7 sing 33 n n C14 H10 5G7 sing 34 n n C15 H11 5G7 sing 35 n n C19 H13 5G7 sing 36 n n C19 H14 5G7 sing 37 n n C19 H15 5G7 sing 38 n n C20 H16 5G7 sing 39 n n C21 H17 5G7 sing 40 n n C22 H18 5G7 sing 41 n n C23 H19 5G7 sing 42 n n # _atom_sites.entry_id 5DVS _atom_sites.fract_transf_matrix[1][1] 0.017921 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00674 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012101 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018268 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 5G7 A 1 900 900 5G7 5G7 . F 3 5G7 B 1 901 901 5G7 5G7 . G 4 HOH A 1 1001 1001 HOH HOH . G 4 HOH A 2 1002 1002 HOH HOH . G 4 HOH A 3 1003 1003 HOH HOH . G 4 HOH A 4 1004 1004 HOH HOH . G 4 HOH A 5 1005 1006 HOH HOH . G 4 HOH A 6 1006 1007 HOH HOH . G 4 HOH A 7 1007 1005 HOH HOH . G 4 HOH A 8 1008 1008 HOH HOH . G 4 HOH A 9 1009 1009 HOH HOH . G 4 HOH A 10 1010 1011 HOH HOH . G 4 HOH A 11 1011 1010 HOH HOH . G 4 HOH A 12 1012 1013 HOH HOH . G 4 HOH A 13 1013 1012 HOH HOH . G 4 HOH A 14 1014 1014 HOH HOH . G 4 HOH A 15 1015 1016 HOH HOH . G 4 HOH A 16 1016 1019 HOH HOH . G 4 HOH A 17 1017 1015 HOH HOH . G 4 HOH A 18 1018 1020 HOH HOH . G 4 HOH A 19 1019 1018 HOH HOH . G 4 HOH A 20 1020 1021 HOH HOH . G 4 HOH A 21 1021 1017 HOH HOH . G 4 HOH A 22 1022 1022 HOH HOH . G 4 HOH A 23 1023 1024 HOH HOH . G 4 HOH A 24 1024 1023 HOH HOH . G 4 HOH A 25 1025 1025 HOH HOH . G 4 HOH A 26 1026 1026 HOH HOH . G 4 HOH A 27 1027 1027 HOH HOH . G 4 HOH A 28 1028 1029 HOH HOH . G 4 HOH A 29 1029 1028 HOH HOH . G 4 HOH A 30 1030 1030 HOH HOH . G 4 HOH A 31 1031 1032 HOH HOH . G 4 HOH A 32 1032 1033 HOH HOH . G 4 HOH A 33 1033 1031 HOH HOH . G 4 HOH A 34 1034 1021 HOH HOH . G 4 HOH A 35 1035 1034 HOH HOH . G 4 HOH A 36 1036 1035 HOH HOH . G 4 HOH A 37 1037 1036 HOH HOH . G 4 HOH A 38 1038 1037 HOH HOH . G 4 HOH A 39 1039 1039 HOH HOH . G 4 HOH A 40 1040 1040 HOH HOH . H 4 HOH B 1 1001 1001 HOH HOH . H 4 HOH B 2 1002 1004 HOH HOH . H 4 HOH B 3 1003 1003 HOH HOH . H 4 HOH B 4 1004 1002 HOH HOH . H 4 HOH B 5 1005 1007 HOH HOH . H 4 HOH B 6 1006 1005 HOH HOH . H 4 HOH B 7 1007 1008 HOH HOH . H 4 HOH B 8 1008 1006 HOH HOH . H 4 HOH B 9 1009 1009 HOH HOH . H 4 HOH B 10 1010 1010 HOH HOH . H 4 HOH B 11 1011 1011 HOH HOH . H 4 HOH B 12 1012 1012 HOH HOH . H 4 HOH B 13 1013 1016 HOH HOH . H 4 HOH B 14 1014 1015 HOH HOH . H 4 HOH B 15 1015 1014 HOH HOH . H 4 HOH B 16 1016 1017 HOH HOH . H 4 HOH B 17 1017 1018 HOH HOH . H 4 HOH B 18 1018 1019 HOH HOH . H 4 HOH B 19 1019 1020 HOH HOH . H 4 HOH B 20 1020 1022 HOH HOH . H 4 HOH B 21 1021 1023 HOH HOH . H 4 HOH B 22 1022 1024 HOH HOH . H 4 HOH B 23 1023 1025 HOH HOH . H 4 HOH B 24 1024 1026 HOH HOH . H 4 HOH B 25 1025 1027 HOH HOH . H 4 HOH B 26 1026 1028 HOH HOH . H 4 HOH B 27 1027 1030 HOH HOH . H 4 HOH B 28 1028 1029 HOH HOH . H 4 HOH B 29 1029 1031 HOH HOH . H 4 HOH B 30 1030 1013 HOH HOH . H 4 HOH B 31 1031 1032 HOH HOH . H 4 HOH B 32 1032 1033 HOH HOH . H 4 HOH B 33 1033 1034 HOH HOH . I 4 HOH C 1 701 701 HOH HOH . I 4 HOH C 2 702 702 HOH HOH . I 4 HOH C 3 703 1038 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O01 5G7 . . . F 3 -5.892 -17.036 -34.55 1 42.4 ? O01 5G7 901 B 1 HETATM 2 C C02 5G7 . . . F 3 -7.228 -17.21 -34.205 1 41.98 ? C02 5G7 901 B 1 HETATM 3 C C03 5G7 . . . F 3 -7.671 -16.78 -32.938 1 42.61 ? C03 5G7 901 B 1 HETATM 4 C C04 5G7 . . . F 3 -9.065 -16.956 -32.563 1 42.71 ? C04 5G7 901 B 1 HETATM 5 C C05 5G7 . . . F 3 -8.1 -17.791 -35.083 1 41.79 ? C05 5G7 901 B 1 HETATM 6 C C06 5G7 . . . F 3 -9.485 -17.966 -34.715 1 42.34 ? C06 5G7 901 B 1 HETATM 7 C C07 5G7 . . . F 3 -9.931 -17.536 -33.43 1 43.18 ? C07 5G7 901 B 1 HETATM 8 C C08 5G7 . . . F 3 -11.387 -17.708 -33.024 1 43.46 ? C08 5G7 901 B 1 HETATM 9 C C09 5G7 . . . F 3 -12.034 -18.983 -33.566 1 41.64 ? C09 5G7 901 B 1 HETATM 10 C C10 5G7 . . . F 3 -13.254 -18.866 -34.25 1 40.75 ? C10 5G7 901 B 1 HETATM 11 C C11 5G7 . . . F 3 -13.892 -20.023 -34.761 1 39.9 ? C11 5G7 901 B 1 HETATM 12 C C12 5G7 . . . F 3 -13.321 -21.273 -34.584 1 39.67 ? C12 5G7 901 B 1 HETATM 13 O O13 5G7 . . . F 3 -13.988 -22.421 -35.112 1 41.27 ? O13 5G7 901 B 1 HETATM 14 C C14 5G7 . . . F 3 -12.083 -21.406 -33.883 1 38.59 ? C14 5G7 901 B 1 HETATM 15 C C15 5G7 . . . F 3 -11.444 -20.278 -33.372 1 39.85 ? C15 5G7 901 B 1 HETATM 16 N N16 5G7 . . . F 3 -11.549 -17.562 -31.665 1 45.21 ? N16 5G7 901 B 1 HETATM 17 C C17 5G7 . . . F 3 -12.846 -17.651 -31.074 1 45.48 ? C17 5G7 901 B 1 HETATM 18 C C18 5G7 . . . F 3 -13.682 -16.478 -30.966 1 45.67 ? C18 5G7 901 B 1 HETATM 19 C C19 5G7 . . . F 3 -13.231 -15.16 -31.471 1 44.9 ? C19 5G7 901 B 1 HETATM 20 C C20 5G7 . . . F 3 -14.928 -16.583 -30.388 1 45.89 ? C20 5G7 901 B 1 HETATM 21 C C21 5G7 . . . F 3 -15.379 -17.815 -29.902 1 45.12 ? C21 5G7 901 B 1 HETATM 22 C C22 5G7 . . . F 3 -14.574 -18.943 -29.999 1 45.35 ? C22 5G7 901 B 1 HETATM 23 C C23 5G7 . . . F 3 -13.286 -18.839 -30.595 1 45.43 ? C23 5G7 901 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #