data_5DVV # _model_server_result.job_id SIdRO7SJOdIhiR8hjk1Rmw _model_server_result.datetime_utc '2024-10-12 16:30:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dvv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":900}' # _entry.id 5DVV # _exptl.entry_id 5DVV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 289.328 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "4,4'-(phenylcarbonimidoyl)diphenol" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.49 _cell.angle_gamma 90 _cell.entry_id 5DVV _cell.length_a 52.83 _cell.length_b 75.87 _cell.length_c 57.84 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DVV _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C19 H15 N O2' _chem_comp.formula_weight 289.328 _chem_comp.id 5G6 _chem_comp.mon_nstd_flag . _chem_comp.name "4,4'-(phenylcarbonimidoyl)diphenol" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O01 C02 5G6 sing 1 n n C12 C13 5G6 doub 2 n y C12 C10 5G6 sing 3 n y C22 C02 5G6 doub 4 n y C22 C21 5G6 sing 5 n y C13 C07 5G6 sing 6 n y C02 C03 5G6 sing 7 n y O11 C10 5G6 sing 8 n n C21 C05 5G6 doub 9 n y C10 C09 5G6 doub 10 n y C03 C04 5G6 doub 11 n y C05 C04 5G6 sing 12 n y C05 C06 5G6 sing 13 n n C07 C06 5G6 sing 14 n n C07 C08 5G6 doub 15 n y C06 N14 5G6 doub 16 n n C09 C08 5G6 sing 17 n y N14 C15 5G6 sing 18 n n C16 C15 5G6 doub 19 n y C16 C17 5G6 sing 20 n y C15 C20 5G6 sing 21 n y C17 C18 5G6 doub 22 n y C20 C19 5G6 doub 23 n y C18 C19 5G6 sing 24 n y O01 H1 5G6 sing 25 n n C03 H2 5G6 sing 26 n n C04 H3 5G6 sing 27 n n C08 H5 5G6 sing 28 n n C09 H6 5G6 sing 29 n n O11 H7 5G6 sing 30 n n C12 H8 5G6 sing 31 n n C13 H9 5G6 sing 32 n n C16 H11 5G6 sing 33 n n C17 H12 5G6 sing 34 n n C18 H13 5G6 sing 35 n n C19 H14 5G6 sing 36 n n C20 H15 5G6 sing 37 n n C21 H16 5G6 sing 38 n n C22 H17 5G6 sing 39 n n # _atom_sites.entry_id 5DVV _atom_sites.fract_transf_matrix[1][1] 0.018929 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007073 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01318 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018457 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 5G6 A 1 900 900 5G6 UNK . F 3 5G6 B 1 901 901 5G6 UNK . G 4 HOH A 1 1001 5 HOH HOH . G 4 HOH A 2 1002 28 HOH HOH . G 4 HOH A 3 1003 3 HOH HOH . G 4 HOH A 4 1004 64 HOH HOH . G 4 HOH A 5 1005 59 HOH HOH . G 4 HOH A 6 1006 76 HOH HOH . G 4 HOH A 7 1007 65 HOH HOH . G 4 HOH A 8 1008 2 HOH HOH . G 4 HOH A 9 1009 67 HOH HOH . G 4 HOH A 10 1010 25 HOH HOH . G 4 HOH A 11 1011 9 HOH HOH . G 4 HOH A 12 1012 12 HOH HOH . G 4 HOH A 13 1013 44 HOH HOH . G 4 HOH A 14 1014 7 HOH HOH . G 4 HOH A 15 1015 21 HOH HOH . G 4 HOH A 16 1016 31 HOH HOH . G 4 HOH A 17 1017 40 HOH HOH . G 4 HOH A 18 1018 50 HOH HOH . G 4 HOH A 19 1019 18 HOH HOH . G 4 HOH A 20 1020 41 HOH HOH . G 4 HOH A 21 1021 16 HOH HOH . G 4 HOH A 22 1022 26 HOH HOH . G 4 HOH A 23 1023 57 HOH HOH . G 4 HOH A 24 1024 19 HOH HOH . G 4 HOH A 25 1025 63 HOH HOH . G 4 HOH A 26 1026 51 HOH HOH . G 4 HOH A 27 1027 48 HOH HOH . G 4 HOH A 28 1028 72 HOH HOH . G 4 HOH A 29 1029 10 HOH HOH . G 4 HOH A 30 1030 47 HOH HOH . G 4 HOH A 31 1031 46 HOH HOH . G 4 HOH A 32 1032 56 HOH HOH . G 4 HOH A 33 1033 27 HOH HOH . G 4 HOH A 34 1034 75 HOH HOH . G 4 HOH A 35 1035 52 HOH HOH . G 4 HOH A 36 1036 24 HOH HOH . G 4 HOH A 37 1037 55 HOH HOH . G 4 HOH A 38 1038 42 HOH HOH . G 4 HOH A 39 1039 33 HOH HOH . H 4 HOH B 1 1001 23 HOH HOH . H 4 HOH B 2 1002 68 HOH HOH . H 4 HOH B 3 1003 73 HOH HOH . H 4 HOH B 4 1004 43 HOH HOH . H 4 HOH B 5 1005 36 HOH HOH . H 4 HOH B 6 1006 70 HOH HOH . H 4 HOH B 7 1007 32 HOH HOH . H 4 HOH B 8 1008 35 HOH HOH . H 4 HOH B 9 1009 69 HOH HOH . H 4 HOH B 10 1010 22 HOH HOH . H 4 HOH B 11 1011 1 HOH HOH . H 4 HOH B 12 1012 11 HOH HOH . H 4 HOH B 13 1013 14 HOH HOH . H 4 HOH B 14 1014 6 HOH HOH . H 4 HOH B 15 1015 13 HOH HOH . H 4 HOH B 16 1016 49 HOH HOH . H 4 HOH B 17 1017 15 HOH HOH . H 4 HOH B 18 1018 54 HOH HOH . H 4 HOH B 19 1019 37 HOH HOH . H 4 HOH B 20 1020 4 HOH HOH . H 4 HOH B 21 1021 53 HOH HOH . H 4 HOH B 22 1022 8 HOH HOH . H 4 HOH B 23 1023 71 HOH HOH . H 4 HOH B 24 1024 60 HOH HOH . H 4 HOH B 25 1025 17 HOH HOH . H 4 HOH B 26 1026 45 HOH HOH . H 4 HOH B 27 1027 39 HOH HOH . H 4 HOH B 28 1028 20 HOH HOH . H 4 HOH B 29 1029 77 HOH HOH . H 4 HOH B 30 1030 66 HOH HOH . H 4 HOH B 31 1031 34 HOH HOH . H 4 HOH B 32 1032 61 HOH HOH . H 4 HOH B 33 1033 74 HOH HOH . H 4 HOH B 34 1034 29 HOH HOH . H 4 HOH B 35 1035 38 HOH HOH . H 4 HOH B 36 1036 62 HOH HOH . I 4 HOH C 1 701 30 HOH HOH . I 4 HOH C 2 702 58 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O01 5G6 . . . E 3 -9.128 -0.121 18.222 0.91 20.23 ? O01 5G6 900 A 1 HETATM 2 C C02 5G6 . . . E 3 -8.388 0.95 18.757 0.91 20.97 ? C02 5G6 900 A 1 HETATM 3 C C03 5G6 . . . E 3 -7.22 0.707 19.462 0.91 21.23 ? C03 5G6 900 A 1 HETATM 4 C C04 5G6 . . . E 3 -6.497 1.767 19.989 0.91 21.37 ? C04 5G6 900 A 1 HETATM 5 C C05 5G6 . . . E 3 -6.937 3.07 19.809 0.91 20.35 ? C05 5G6 900 A 1 HETATM 6 C C06 5G6 . . . E 3 -6.143 4.223 20.393 0.91 21.26 ? C06 5G6 900 A 1 HETATM 7 C C07 5G6 . . . E 3 -4.706 4.446 19.976 0.91 20.27 ? C07 5G6 900 A 1 HETATM 8 C C08 5G6 . . . E 3 -3.808 5.01 20.871 0.91 20.91 ? C08 5G6 900 A 1 HETATM 9 C C09 5G6 . . . E 3 -2.49 5.221 20.493 0.91 22.64 ? C09 5G6 900 A 1 HETATM 10 C C10 5G6 . . . E 3 -2.072 4.869 19.218 0.91 23.09 ? C10 5G6 900 A 1 HETATM 11 O O11 5G6 . . . E 3 -0.735 5.08 18.829 0.91 25.06 ? O11 5G6 900 A 1 HETATM 12 C C12 5G6 . . . E 3 -2.972 4.307 18.326 0.91 20.35 ? C12 5G6 900 A 1 HETATM 13 C C13 5G6 . . . E 3 -4.289 4.096 18.703 0.91 19.58 ? C13 5G6 900 A 1 HETATM 14 N N14 5G6 . . . E 3 -6.722 5.147 21.118 0.91 23.35 ? N14 5G6 900 A 1 HETATM 15 C C15 5G6 . . . E 3 -7.896 4.914 21.884 0.91 25.31 ? C15 5G6 900 A 1 HETATM 16 C C16 5G6 . . . E 3 -8.954 5.805 21.789 0.91 24.71 ? C16 5G6 900 A 1 HETATM 17 C C17 5G6 . . . E 3 -10.107 5.597 22.528 0.91 24.48 ? C17 5G6 900 A 1 HETATM 18 C C18 5G6 . . . E 3 -10.204 4.496 23.363 0.91 25.89 ? C18 5G6 900 A 1 HETATM 19 C C19 5G6 . . . E 3 -9.148 3.603 23.459 0.91 27.31 ? C19 5G6 900 A 1 HETATM 20 C C20 5G6 . . . E 3 -7.993 3.813 22.724 0.91 26.77 ? C20 5G6 900 A 1 HETATM 21 C C21 5G6 . . . E 3 -8.107 3.309 19.104 0.91 20.3 ? C21 5G6 900 A 1 HETATM 22 C C22 5G6 . . . E 3 -8.831 2.252 18.579 0.91 20.77 ? C22 5G6 900 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 22 #