data_5DW0 # _model_server_result.job_id eOw42k-v_dQFfTC1ts9Jlw _model_server_result.datetime_utc '2024-11-23 21:48:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dw0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":402}' # _entry.id 5DW0 # _exptl.entry_id 5DW0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5DW0 _cell.length_a 84.241 _cell.length_b 109.131 _cell.length_c 160.797 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DW0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,M,N 1 1 C,D,I,J,K,L,O,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O SER 263 A SER 263 1_555 F NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.868 ? metalc ? metalc2 A OG SER 265 A SER 265 1_555 F NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.945 ? metalc ? metalc3 A O TYR 301 A TYR 301 1_555 F NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? metalc ? metalc4 A O GLY 303 A GLY 303 1_555 F NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.787 ? metalc ? metalc5 F NA NA . A NA 402 1_555 M O HOH . A HOH 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? metalc ? metalc6 F NA NA . A NA 402 1_555 M O HOH . A HOH 516 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc7 B O SER 263 B SER 263 1_555 H NA NA . B NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.964 ? metalc ? metalc8 B OG SER 265 B SER 265 1_555 H NA NA . B NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? metalc ? metalc9 B O TYR 301 B TYR 301 1_555 H NA NA . B NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? metalc ? metalc10 B O GLY 303 B GLY 303 1_555 H NA NA . B NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.732 ? metalc ? metalc11 H NA NA . B NA 402 1_555 N O HOH . B HOH 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc12 H NA NA . B NA 402 1_555 N O HOH . B HOH 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? metalc ? metalc13 C O SER 263 C SER 263 1_555 J NA NA . C NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.959 ? metalc ? metalc14 C OG SER 265 C SER 265 1_555 J NA NA . C NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.793 ? metalc ? metalc15 C O TYR 301 C TYR 301 1_555 J NA NA . C NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? metalc ? metalc16 C O GLY 303 C GLY 303 1_555 J NA NA . C NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.716 ? metalc ? metalc17 J NA NA . C NA 402 1_555 O O HOH . C HOH 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc18 J NA NA . C NA 402 1_555 O O HOH . C HOH 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? metalc ? metalc19 D O SER 263 D SER 263 1_555 L NA NA . D NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.97 ? metalc ? metalc20 D OG SER 265 D SER 265 1_555 L NA NA . D NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.907 ? metalc ? metalc21 D O TYR 301 D TYR 301 1_555 L NA NA . D NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? metalc ? metalc22 D O GLY 303 D GLY 303 1_555 L NA NA . D NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.707 ? metalc ? metalc23 L NA NA . D NA 402 1_555 P O HOH . D HOH 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc24 L NA NA . D NA 402 1_555 P O HOH . D HOH 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5DW0 _atom_sites.fract_transf_matrix[1][1] 0.011871 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009163 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006219 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PLS A 1 401 1 PLS PLS . F 3 NA A 1 402 2 NA NA . G 2 PLS B 1 401 4 PLS PLS . H 3 NA B 1 402 1 NA NA . I 2 PLS C 1 401 3 PLS PLS . J 3 NA C 1 402 4 NA NA . K 2 PLS D 1 401 2 PLS PLS . L 3 NA D 1 402 3 NA NA . M 4 HOH A 1 501 151 HOH HOH . M 4 HOH A 2 502 12 HOH HOH . M 4 HOH A 3 503 35 HOH HOH . M 4 HOH A 4 504 169 HOH HOH . M 4 HOH A 5 505 105 HOH HOH . M 4 HOH A 6 506 178 HOH HOH . M 4 HOH A 7 507 28 HOH HOH . M 4 HOH A 8 508 69 HOH HOH . M 4 HOH A 9 509 194 HOH HOH . M 4 HOH A 10 510 144 HOH HOH . M 4 HOH A 11 511 220 HOH HOH . M 4 HOH A 12 512 122 HOH HOH . M 4 HOH A 13 513 111 HOH HOH . M 4 HOH A 14 514 43 HOH HOH . M 4 HOH A 15 515 48 HOH HOH . M 4 HOH A 16 516 37 HOH HOH . M 4 HOH A 17 517 167 HOH HOH . M 4 HOH A 18 518 134 HOH HOH . M 4 HOH A 19 519 175 HOH HOH . M 4 HOH A 20 520 117 HOH HOH . M 4 HOH A 21 521 76 HOH HOH . M 4 HOH A 22 522 72 HOH HOH . M 4 HOH A 23 523 89 HOH HOH . M 4 HOH A 24 524 181 HOH HOH . M 4 HOH A 25 525 118 HOH HOH . M 4 HOH A 26 526 113 HOH HOH . M 4 HOH A 27 527 198 HOH HOH . M 4 HOH A 28 528 39 HOH HOH . M 4 HOH A 29 529 56 HOH HOH . M 4 HOH A 30 530 173 HOH HOH . M 4 HOH A 31 531 25 HOH HOH . M 4 HOH A 32 532 177 HOH HOH . M 4 HOH A 33 533 45 HOH HOH . M 4 HOH A 34 534 88 HOH HOH . M 4 HOH A 35 535 202 HOH HOH . M 4 HOH A 36 536 38 HOH HOH . M 4 HOH A 37 537 11 HOH HOH . M 4 HOH A 38 538 60 HOH HOH . M 4 HOH A 39 539 62 HOH HOH . M 4 HOH A 40 540 196 HOH HOH . M 4 HOH A 41 541 203 HOH HOH . M 4 HOH A 42 542 231 HOH HOH . M 4 HOH A 43 543 71 HOH HOH . M 4 HOH A 44 544 172 HOH HOH . M 4 HOH A 45 545 91 HOH HOH . M 4 HOH A 46 546 31 HOH HOH . M 4 HOH A 47 547 40 HOH HOH . M 4 HOH A 48 548 133 HOH HOH . M 4 HOH A 49 549 21 HOH HOH . M 4 HOH A 50 550 120 HOH HOH . M 4 HOH A 51 551 148 HOH HOH . M 4 HOH A 52 552 53 HOH HOH . M 4 HOH A 53 553 154 HOH HOH . M 4 HOH A 54 554 61 HOH HOH . M 4 HOH A 55 555 77 HOH HOH . M 4 HOH A 56 556 96 HOH HOH . M 4 HOH A 57 557 225 HOH HOH . M 4 HOH A 58 558 168 HOH HOH . M 4 HOH A 59 559 9 HOH HOH . M 4 HOH A 60 560 131 HOH HOH . M 4 HOH A 61 561 98 HOH HOH . M 4 HOH A 62 562 49 HOH HOH . M 4 HOH A 63 563 126 HOH HOH . M 4 HOH A 64 564 138 HOH HOH . M 4 HOH A 65 565 135 HOH HOH . M 4 HOH A 66 566 119 HOH HOH . M 4 HOH A 67 567 110 HOH HOH . M 4 HOH A 68 568 14 HOH HOH . M 4 HOH A 69 569 160 HOH HOH . M 4 HOH A 70 570 147 HOH HOH . N 4 HOH B 1 501 55 HOH HOH . N 4 HOH B 2 502 143 HOH HOH . N 4 HOH B 3 503 103 HOH HOH . N 4 HOH B 4 504 209 HOH HOH . N 4 HOH B 5 505 223 HOH HOH . N 4 HOH B 6 506 27 HOH HOH . N 4 HOH B 7 507 214 HOH HOH . N 4 HOH B 8 508 235 HOH HOH . N 4 HOH B 9 509 70 HOH HOH . N 4 HOH B 10 510 201 HOH HOH . N 4 HOH B 11 511 52 HOH HOH . N 4 HOH B 12 512 204 HOH HOH . N 4 HOH B 13 513 17 HOH HOH . N 4 HOH B 14 514 99 HOH HOH . N 4 HOH B 15 515 95 HOH HOH . N 4 HOH B 16 516 84 HOH HOH . N 4 HOH B 17 517 67 HOH HOH . N 4 HOH B 18 518 109 HOH HOH . N 4 HOH B 19 519 6 HOH HOH . N 4 HOH B 20 520 68 HOH HOH . N 4 HOH B 21 521 222 HOH HOH . N 4 HOH B 22 522 187 HOH HOH . N 4 HOH B 23 523 162 HOH HOH . N 4 HOH B 24 524 141 HOH HOH . N 4 HOH B 25 525 26 HOH HOH . N 4 HOH B 26 526 102 HOH HOH . N 4 HOH B 27 527 58 HOH HOH . N 4 HOH B 28 528 233 HOH HOH . N 4 HOH B 29 529 5 HOH HOH . N 4 HOH B 30 530 183 HOH HOH . N 4 HOH B 31 531 206 HOH HOH . N 4 HOH B 32 532 36 HOH HOH . N 4 HOH B 33 533 200 HOH HOH . N 4 HOH B 34 534 152 HOH HOH . N 4 HOH B 35 535 93 HOH HOH . N 4 HOH B 36 536 54 HOH HOH . N 4 HOH B 37 537 44 HOH HOH . N 4 HOH B 38 538 171 HOH HOH . N 4 HOH B 39 539 142 HOH HOH . N 4 HOH B 40 540 157 HOH HOH . N 4 HOH B 41 541 94 HOH HOH . N 4 HOH B 42 542 121 HOH HOH . N 4 HOH B 43 543 50 HOH HOH . N 4 HOH B 44 544 115 HOH HOH . N 4 HOH B 45 545 97 HOH HOH . N 4 HOH B 46 546 182 HOH HOH . O 4 HOH C 1 501 42 HOH HOH . O 4 HOH C 2 502 179 HOH HOH . O 4 HOH C 3 503 101 HOH HOH . O 4 HOH C 4 504 215 HOH HOH . O 4 HOH C 5 505 192 HOH HOH . O 4 HOH C 6 506 29 HOH HOH . O 4 HOH C 7 507 188 HOH HOH . O 4 HOH C 8 508 80 HOH HOH . O 4 HOH C 9 509 163 HOH HOH . O 4 HOH C 10 510 180 HOH HOH . O 4 HOH C 11 511 129 HOH HOH . O 4 HOH C 12 512 107 HOH HOH . O 4 HOH C 13 513 170 HOH HOH . O 4 HOH C 14 514 24 HOH HOH . O 4 HOH C 15 515 211 HOH HOH . O 4 HOH C 16 516 92 HOH HOH . O 4 HOH C 17 517 114 HOH HOH . O 4 HOH C 18 518 116 HOH HOH . O 4 HOH C 19 519 15 HOH HOH . O 4 HOH C 20 520 197 HOH HOH . O 4 HOH C 21 521 164 HOH HOH . O 4 HOH C 22 522 18 HOH HOH . O 4 HOH C 23 523 132 HOH HOH . O 4 HOH C 24 524 205 HOH HOH . O 4 HOH C 25 525 8 HOH HOH . O 4 HOH C 26 526 112 HOH HOH . O 4 HOH C 27 527 13 HOH HOH . O 4 HOH C 28 528 210 HOH HOH . O 4 HOH C 29 529 41 HOH HOH . O 4 HOH C 30 530 30 HOH HOH . O 4 HOH C 31 531 83 HOH HOH . O 4 HOH C 32 532 149 HOH HOH . O 4 HOH C 33 533 226 HOH HOH . O 4 HOH C 34 534 57 HOH HOH . O 4 HOH C 35 535 234 HOH HOH . O 4 HOH C 36 536 229 HOH HOH . O 4 HOH C 37 537 159 HOH HOH . O 4 HOH C 38 538 19 HOH HOH . O 4 HOH C 39 539 66 HOH HOH . O 4 HOH C 40 540 189 HOH HOH . O 4 HOH C 41 541 81 HOH HOH . O 4 HOH C 42 542 150 HOH HOH . O 4 HOH C 43 543 106 HOH HOH . O 4 HOH C 44 544 33 HOH HOH . O 4 HOH C 45 545 87 HOH HOH . O 4 HOH C 46 546 130 HOH HOH . O 4 HOH C 47 547 75 HOH HOH . O 4 HOH C 48 548 195 HOH HOH . O 4 HOH C 49 549 73 HOH HOH . P 4 HOH D 1 501 156 HOH HOH . P 4 HOH D 2 502 127 HOH HOH . P 4 HOH D 3 503 153 HOH HOH . P 4 HOH D 4 504 176 HOH HOH . P 4 HOH D 5 505 137 HOH HOH . P 4 HOH D 6 506 158 HOH HOH . P 4 HOH D 7 507 125 HOH HOH . P 4 HOH D 8 508 123 HOH HOH . P 4 HOH D 9 509 23 HOH HOH . P 4 HOH D 10 510 51 HOH HOH . P 4 HOH D 11 511 190 HOH HOH . P 4 HOH D 12 512 191 HOH HOH . P 4 HOH D 13 513 22 HOH HOH . P 4 HOH D 14 514 185 HOH HOH . P 4 HOH D 15 515 85 HOH HOH . P 4 HOH D 16 516 100 HOH HOH . P 4 HOH D 17 517 32 HOH HOH . P 4 HOH D 18 518 161 HOH HOH . P 4 HOH D 19 519 165 HOH HOH . P 4 HOH D 20 520 16 HOH HOH . P 4 HOH D 21 521 166 HOH HOH . P 4 HOH D 22 522 140 HOH HOH . P 4 HOH D 23 523 124 HOH HOH . P 4 HOH D 24 524 4 HOH HOH . P 4 HOH D 25 525 10 HOH HOH . P 4 HOH D 26 526 64 HOH HOH . P 4 HOH D 27 527 128 HOH HOH . P 4 HOH D 28 528 108 HOH HOH . P 4 HOH D 29 529 208 HOH HOH . P 4 HOH D 30 530 199 HOH HOH . P 4 HOH D 31 531 232 HOH HOH . P 4 HOH D 32 532 63 HOH HOH . P 4 HOH D 33 533 59 HOH HOH . P 4 HOH D 34 534 82 HOH HOH . P 4 HOH D 35 535 227 HOH HOH . P 4 HOH D 36 536 74 HOH HOH . P 4 HOH D 37 537 207 HOH HOH . P 4 HOH D 38 538 184 HOH HOH . P 4 HOH D 39 539 136 HOH HOH . P 4 HOH D 40 540 79 HOH HOH . P 4 HOH D 41 541 90 HOH HOH . P 4 HOH D 42 542 139 HOH HOH . P 4 HOH D 43 543 86 HOH HOH . P 4 HOH D 44 544 155 HOH HOH . P 4 HOH D 45 545 186 HOH HOH . P 4 HOH D 46 546 65 HOH HOH . P 4 HOH D 47 547 104 HOH HOH . P 4 HOH D 48 548 174 HOH HOH . P 4 HOH D 49 549 145 HOH HOH . P 4 HOH D 50 550 146 HOH HOH . P 4 HOH D 51 551 193 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id L _atom_site.label_entity_id 3 _atom_site.Cartn_x 47.09 _atom_site.Cartn_y -7.124 _atom_site.Cartn_z -74.163 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 38.87 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 402 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #