data_5DW2 # _model_server_result.job_id fbF4fnoy38Ty-DOfN9uJHQ _model_server_result.datetime_utc '2024-11-24 02:48:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dw2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 5DW2 # _exptl.entry_id 5DW2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5DW2 _cell.length_a 37.279 _cell.length_b 44.656 _cell.length_c 78.015 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DW2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 146 n n C1 C2 EDO sing 147 n n C1 H11 EDO sing 148 n n C1 H12 EDO sing 149 n n O1 HO1 EDO sing 150 n n C2 O2 EDO sing 151 n n C2 H21 EDO sing 152 n n C2 H22 EDO sing 153 n n O2 HO2 EDO sing 154 n n # _atom_sites.entry_id 5DW2 _atom_sites.fract_transf_matrix[1][1] 0.026825 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022393 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012818 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5GD A 1 201 200 5GD P97 . C 3 EDO A 1 202 1 EDO EDO . D 3 EDO A 1 203 2 EDO EDO . E 3 EDO A 1 204 3 EDO EDO . F 3 EDO A 1 205 4 EDO EDO . G 4 HOH A 1 301 256 HOH HOH . G 4 HOH A 2 302 105 HOH HOH . G 4 HOH A 3 303 103 HOH HOH . G 4 HOH A 4 304 191 HOH HOH . G 4 HOH A 5 305 232 HOH HOH . G 4 HOH A 6 306 183 HOH HOH . G 4 HOH A 7 307 34 HOH HOH . G 4 HOH A 8 308 246 HOH HOH . G 4 HOH A 9 309 107 HOH HOH . G 4 HOH A 10 310 252 HOH HOH . G 4 HOH A 11 311 286 HOH HOH . G 4 HOH A 12 312 290 HOH HOH . G 4 HOH A 13 313 157 HOH HOH . G 4 HOH A 14 314 43 HOH HOH . G 4 HOH A 15 315 194 HOH HOH . G 4 HOH A 16 316 209 HOH HOH . G 4 HOH A 17 317 81 HOH HOH . G 4 HOH A 18 318 266 HOH HOH . G 4 HOH A 19 319 165 HOH HOH . G 4 HOH A 20 320 277 HOH HOH . G 4 HOH A 21 321 106 HOH HOH . G 4 HOH A 22 322 64 HOH HOH . G 4 HOH A 23 323 153 HOH HOH . G 4 HOH A 24 324 159 HOH HOH . G 4 HOH A 25 325 251 HOH HOH . G 4 HOH A 26 326 75 HOH HOH . G 4 HOH A 27 327 141 HOH HOH . G 4 HOH A 28 328 202 HOH HOH . G 4 HOH A 29 329 224 HOH HOH . G 4 HOH A 30 330 58 HOH HOH . G 4 HOH A 31 331 52 HOH HOH . G 4 HOH A 32 332 261 HOH HOH . G 4 HOH A 33 333 49 HOH HOH . G 4 HOH A 34 334 228 HOH HOH . G 4 HOH A 35 335 143 HOH HOH . G 4 HOH A 36 336 18 HOH HOH . G 4 HOH A 37 337 1 HOH HOH . G 4 HOH A 38 338 57 HOH HOH . G 4 HOH A 39 339 56 HOH HOH . G 4 HOH A 40 340 137 HOH HOH . G 4 HOH A 41 341 198 HOH HOH . G 4 HOH A 42 342 25 HOH HOH . G 4 HOH A 43 343 61 HOH HOH . G 4 HOH A 44 344 167 HOH HOH . G 4 HOH A 45 345 289 HOH HOH . G 4 HOH A 46 346 14 HOH HOH . G 4 HOH A 47 347 150 HOH HOH . G 4 HOH A 48 348 114 HOH HOH . G 4 HOH A 49 349 217 HOH HOH . G 4 HOH A 50 350 68 HOH HOH . G 4 HOH A 51 351 86 HOH HOH . G 4 HOH A 52 352 66 HOH HOH . G 4 HOH A 53 353 112 HOH HOH . G 4 HOH A 54 354 40 HOH HOH . G 4 HOH A 55 355 17 HOH HOH . G 4 HOH A 56 356 120 HOH HOH . G 4 HOH A 57 357 104 HOH HOH . G 4 HOH A 58 358 145 HOH HOH . G 4 HOH A 59 359 73 HOH HOH . G 4 HOH A 60 360 35 HOH HOH . G 4 HOH A 61 361 16 HOH HOH . G 4 HOH A 62 362 96 HOH HOH . G 4 HOH A 63 363 6 HOH HOH . G 4 HOH A 64 364 50 HOH HOH . G 4 HOH A 65 365 100 HOH HOH . G 4 HOH A 66 366 47 HOH HOH . G 4 HOH A 67 367 62 HOH HOH . G 4 HOH A 68 368 195 HOH HOH . G 4 HOH A 69 369 90 HOH HOH . G 4 HOH A 70 370 2 HOH HOH . G 4 HOH A 71 371 32 HOH HOH . G 4 HOH A 72 372 133 HOH HOH . G 4 HOH A 73 373 30 HOH HOH . G 4 HOH A 74 374 190 HOH HOH . G 4 HOH A 75 375 142 HOH HOH . G 4 HOH A 76 376 19 HOH HOH . G 4 HOH A 77 377 178 HOH HOH . G 4 HOH A 78 378 207 HOH HOH . G 4 HOH A 79 379 3 HOH HOH . G 4 HOH A 80 380 23 HOH HOH . G 4 HOH A 81 381 63 HOH HOH . G 4 HOH A 82 382 113 HOH HOH . G 4 HOH A 83 383 248 HOH HOH . G 4 HOH A 84 384 131 HOH HOH . G 4 HOH A 85 385 108 HOH HOH . G 4 HOH A 86 386 55 HOH HOH . G 4 HOH A 87 387 225 HOH HOH . G 4 HOH A 88 388 48 HOH HOH . G 4 HOH A 89 389 26 HOH HOH . G 4 HOH A 90 390 4 HOH HOH . G 4 HOH A 91 391 39 HOH HOH . G 4 HOH A 92 392 67 HOH HOH . G 4 HOH A 93 393 244 HOH HOH . G 4 HOH A 94 394 71 HOH HOH . G 4 HOH A 95 395 180 HOH HOH . G 4 HOH A 96 396 115 HOH HOH . G 4 HOH A 97 397 93 HOH HOH . G 4 HOH A 98 398 45 HOH HOH . G 4 HOH A 99 399 79 HOH HOH . G 4 HOH A 100 400 41 HOH HOH . G 4 HOH A 101 401 146 HOH HOH . G 4 HOH A 102 402 46 HOH HOH . G 4 HOH A 103 403 42 HOH HOH . G 4 HOH A 104 404 22 HOH HOH . G 4 HOH A 105 405 139 HOH HOH . G 4 HOH A 106 406 15 HOH HOH . G 4 HOH A 107 407 82 HOH HOH . G 4 HOH A 108 408 5 HOH HOH . G 4 HOH A 109 409 179 HOH HOH . G 4 HOH A 110 410 218 HOH HOH . G 4 HOH A 111 411 31 HOH HOH . G 4 HOH A 112 412 87 HOH HOH . G 4 HOH A 113 413 216 HOH HOH . G 4 HOH A 114 414 154 HOH HOH . G 4 HOH A 115 415 8 HOH HOH . G 4 HOH A 116 416 192 HOH HOH . G 4 HOH A 117 417 10 HOH HOH . G 4 HOH A 118 418 291 HOH HOH . G 4 HOH A 119 419 24 HOH HOH . G 4 HOH A 120 420 12 HOH HOH . G 4 HOH A 121 421 240 HOH HOH . G 4 HOH A 122 422 51 HOH HOH . G 4 HOH A 123 423 279 HOH HOH . G 4 HOH A 124 424 119 HOH HOH . G 4 HOH A 125 425 44 HOH HOH . G 4 HOH A 126 426 29 HOH HOH . G 4 HOH A 127 427 130 HOH HOH . G 4 HOH A 128 428 173 HOH HOH . G 4 HOH A 129 429 222 HOH HOH . G 4 HOH A 130 430 238 HOH HOH . G 4 HOH A 131 431 85 HOH HOH . G 4 HOH A 132 432 175 HOH HOH . G 4 HOH A 133 433 9 HOH HOH . G 4 HOH A 134 434 38 HOH HOH . G 4 HOH A 135 435 7 HOH HOH . G 4 HOH A 136 436 95 HOH HOH . G 4 HOH A 137 437 111 HOH HOH . G 4 HOH A 138 438 98 HOH HOH . G 4 HOH A 139 439 33 HOH HOH . G 4 HOH A 140 440 99 HOH HOH . G 4 HOH A 141 441 161 HOH HOH . G 4 HOH A 142 442 109 HOH HOH . G 4 HOH A 143 443 97 HOH HOH . G 4 HOH A 144 444 203 HOH HOH . G 4 HOH A 145 445 92 HOH HOH . G 4 HOH A 146 446 174 HOH HOH . G 4 HOH A 147 447 37 HOH HOH . G 4 HOH A 148 448 88 HOH HOH . G 4 HOH A 149 449 213 HOH HOH . G 4 HOH A 150 450 102 HOH HOH . G 4 HOH A 151 451 60 HOH HOH . G 4 HOH A 152 452 200 HOH HOH . G 4 HOH A 153 453 53 HOH HOH . G 4 HOH A 154 454 204 HOH HOH . G 4 HOH A 155 455 28 HOH HOH . G 4 HOH A 156 456 118 HOH HOH . G 4 HOH A 157 457 164 HOH HOH . G 4 HOH A 158 458 294 HOH HOH . G 4 HOH A 159 459 128 HOH HOH . G 4 HOH A 160 460 149 HOH HOH . G 4 HOH A 161 461 13 HOH HOH . G 4 HOH A 162 462 234 HOH HOH . G 4 HOH A 163 463 124 HOH HOH . G 4 HOH A 164 464 285 HOH HOH . G 4 HOH A 165 465 20 HOH HOH . G 4 HOH A 166 466 221 HOH HOH . G 4 HOH A 167 467 144 HOH HOH . G 4 HOH A 168 468 148 HOH HOH . G 4 HOH A 169 469 278 HOH HOH . G 4 HOH A 170 470 152 HOH HOH . G 4 HOH A 171 471 181 HOH HOH . G 4 HOH A 172 472 284 HOH HOH . G 4 HOH A 173 473 257 HOH HOH . G 4 HOH A 174 474 214 HOH HOH . G 4 HOH A 175 475 287 HOH HOH . G 4 HOH A 176 476 219 HOH HOH . G 4 HOH A 177 477 156 HOH HOH . G 4 HOH A 178 478 255 HOH HOH . G 4 HOH A 179 479 288 HOH HOH . G 4 HOH A 180 480 262 HOH HOH . G 4 HOH A 181 481 282 HOH HOH . G 4 HOH A 182 482 129 HOH HOH . G 4 HOH A 183 483 116 HOH HOH . G 4 HOH A 184 484 292 HOH HOH . G 4 HOH A 185 485 70 HOH HOH . G 4 HOH A 186 486 162 HOH HOH . G 4 HOH A 187 487 158 HOH HOH . G 4 HOH A 188 488 189 HOH HOH . G 4 HOH A 189 489 185 HOH HOH . G 4 HOH A 190 490 151 HOH HOH . G 4 HOH A 191 491 184 HOH HOH . G 4 HOH A 192 492 77 HOH HOH . G 4 HOH A 193 493 121 HOH HOH . G 4 HOH A 194 494 264 HOH HOH . G 4 HOH A 195 495 69 HOH HOH . G 4 HOH A 196 496 188 HOH HOH . G 4 HOH A 197 497 230 HOH HOH . G 4 HOH A 198 498 237 HOH HOH . G 4 HOH A 199 499 135 HOH HOH . G 4 HOH A 200 500 54 HOH HOH . G 4 HOH A 201 501 36 HOH HOH . G 4 HOH A 202 502 166 HOH HOH . G 4 HOH A 203 503 170 HOH HOH . G 4 HOH A 204 504 275 HOH HOH . G 4 HOH A 205 505 239 HOH HOH . G 4 HOH A 206 506 160 HOH HOH . G 4 HOH A 207 507 122 HOH HOH . G 4 HOH A 208 508 91 HOH HOH . G 4 HOH A 209 509 78 HOH HOH . G 4 HOH A 210 510 253 HOH HOH . G 4 HOH A 211 511 265 HOH HOH . G 4 HOH A 212 512 11 HOH HOH . G 4 HOH A 213 513 127 HOH HOH . G 4 HOH A 214 514 201 HOH HOH . G 4 HOH A 215 515 117 HOH HOH . G 4 HOH A 216 516 101 HOH HOH . G 4 HOH A 217 517 271 HOH HOH . G 4 HOH A 218 518 74 HOH HOH . G 4 HOH A 219 519 59 HOH HOH . G 4 HOH A 220 520 80 HOH HOH . G 4 HOH A 221 521 236 HOH HOH . G 4 HOH A 222 522 245 HOH HOH . G 4 HOH A 223 523 27 HOH HOH . G 4 HOH A 224 524 123 HOH HOH . G 4 HOH A 225 525 89 HOH HOH . G 4 HOH A 226 526 176 HOH HOH . G 4 HOH A 227 527 231 HOH HOH . G 4 HOH A 228 528 197 HOH HOH . G 4 HOH A 229 529 168 HOH HOH . G 4 HOH A 230 530 72 HOH HOH . G 4 HOH A 231 531 220 HOH HOH . G 4 HOH A 232 532 193 HOH HOH . G 4 HOH A 233 533 206 HOH HOH . G 4 HOH A 234 534 125 HOH HOH . G 4 HOH A 235 535 272 HOH HOH . G 4 HOH A 236 536 293 HOH HOH . G 4 HOH A 237 537 163 HOH HOH . G 4 HOH A 238 538 171 HOH HOH . G 4 HOH A 239 539 258 HOH HOH . G 4 HOH A 240 540 147 HOH HOH . G 4 HOH A 241 541 273 HOH HOH . G 4 HOH A 242 542 243 HOH HOH . G 4 HOH A 243 543 269 HOH HOH . G 4 HOH A 244 544 136 HOH HOH . G 4 HOH A 245 545 177 HOH HOH . G 4 HOH A 246 546 276 HOH HOH . G 4 HOH A 247 547 254 HOH HOH . G 4 HOH A 248 548 212 HOH HOH . G 4 HOH A 249 549 242 HOH HOH . G 4 HOH A 250 550 132 HOH HOH . G 4 HOH A 251 551 274 HOH HOH . G 4 HOH A 252 552 76 HOH HOH . G 4 HOH A 253 553 196 HOH HOH . G 4 HOH A 254 554 110 HOH HOH . G 4 HOH A 255 555 241 HOH HOH . G 4 HOH A 256 556 259 HOH HOH . G 4 HOH A 257 557 134 HOH HOH . G 4 HOH A 258 558 215 HOH HOH . G 4 HOH A 259 559 268 HOH HOH . G 4 HOH A 260 560 199 HOH HOH . G 4 HOH A 261 561 182 HOH HOH . G 4 HOH A 262 562 235 HOH HOH . G 4 HOH A 263 563 172 HOH HOH . G 4 HOH A 264 564 227 HOH HOH . G 4 HOH A 265 565 65 HOH HOH . G 4 HOH A 266 566 155 HOH HOH . G 4 HOH A 267 567 126 HOH HOH . G 4 HOH A 268 568 280 HOH HOH . G 4 HOH A 269 569 229 HOH HOH . G 4 HOH A 270 570 21 HOH HOH . G 4 HOH A 271 571 169 HOH HOH . G 4 HOH A 272 572 211 HOH HOH . G 4 HOH A 273 573 270 HOH HOH . G 4 HOH A 274 574 94 HOH HOH . G 4 HOH A 275 575 186 HOH HOH . G 4 HOH A 276 576 208 HOH HOH . G 4 HOH A 277 577 205 HOH HOH . G 4 HOH A 278 578 295 HOH HOH . G 4 HOH A 279 579 281 HOH HOH . G 4 HOH A 280 580 210 HOH HOH . G 4 HOH A 281 581 187 HOH HOH . G 4 HOH A 282 582 84 HOH HOH . G 4 HOH A 283 583 249 HOH HOH . G 4 HOH A 284 584 83 HOH HOH . G 4 HOH A 285 585 250 HOH HOH . G 4 HOH A 286 586 138 HOH HOH . G 4 HOH A 287 587 140 HOH HOH . G 4 HOH A 288 588 223 HOH HOH . G 4 HOH A 289 589 283 HOH HOH . G 4 HOH A 290 590 247 HOH HOH . G 4 HOH A 291 591 233 HOH HOH . G 4 HOH A 292 592 267 HOH HOH . G 4 HOH A 293 593 260 HOH HOH . G 4 HOH A 294 594 263 HOH HOH . G 4 HOH A 295 595 226 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 3 23.519 1.588 -6.71 1 18.82 ? C1 EDO 203 A 1 HETATM 2 O O1 EDO . . . D 3 22.308 2.278 -7.161 1 12.75 ? O1 EDO 203 A 1 HETATM 3 C C2 EDO . . . D 3 24.509 2.509 -6.037 1 18.49 ? C2 EDO 203 A 1 HETATM 4 O O2 EDO . . . D 3 24.932 3.474 -6.865 1 20.7 ? O2 EDO 203 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #