data_5DWD # _model_server_result.job_id p_QAHxwA8eE76ekp6-aHWg _model_server_result.datetime_utc '2024-11-13 05:37:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dwd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 5DWD # _exptl.entry_id 5DWD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.37 _cell.angle_gamma 90 _cell.entry_id 5DWD _cell.length_a 41.772 _cell.length_b 73.398 _cell.length_c 66.403 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DWD _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 169 n n C1 C2 GOL sing 170 n n C1 H11 GOL sing 171 n n C1 H12 GOL sing 172 n n O1 HO1 GOL sing 173 n n C2 O2 GOL sing 174 n n C2 C3 GOL sing 175 n n C2 H2 GOL sing 176 n n O2 HO2 GOL sing 177 n n C3 O3 GOL sing 178 n n C3 H31 GOL sing 179 n n C3 H32 GOL sing 180 n n O3 HO3 GOL sing 181 n n # _atom_sites.entry_id 5DWD _atom_sites.fract_transf_matrix[1][1] 0.023939 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005251 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013624 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015418 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 1PG B 1 301 1 1PG LIG . D 3 GOL B 1 302 2 GOL GOL . E 4 HOH A 1 301 92 HOH HOH . E 4 HOH A 2 302 329 HOH HOH . E 4 HOH A 3 303 311 HOH HOH . E 4 HOH A 4 304 121 HOH HOH . E 4 HOH A 5 305 197 HOH HOH . E 4 HOH A 6 306 83 HOH HOH . E 4 HOH A 7 307 112 HOH HOH . E 4 HOH A 8 308 231 HOH HOH . E 4 HOH A 9 309 235 HOH HOH . E 4 HOH A 10 310 168 HOH HOH . E 4 HOH A 11 311 179 HOH HOH . E 4 HOH A 12 312 107 HOH HOH . E 4 HOH A 13 313 185 HOH HOH . E 4 HOH A 14 314 88 HOH HOH . E 4 HOH A 15 315 318 HOH HOH . E 4 HOH A 16 316 198 HOH HOH . E 4 HOH A 17 317 320 HOH HOH . E 4 HOH A 18 318 70 HOH HOH . E 4 HOH A 19 319 201 HOH HOH . E 4 HOH A 20 320 195 HOH HOH . E 4 HOH A 21 321 291 HOH HOH . E 4 HOH A 22 322 115 HOH HOH . E 4 HOH A 23 323 87 HOH HOH . E 4 HOH A 24 324 296 HOH HOH . E 4 HOH A 25 325 65 HOH HOH . E 4 HOH A 26 326 34 HOH HOH . E 4 HOH A 27 327 133 HOH HOH . E 4 HOH A 28 328 2 HOH HOH . E 4 HOH A 29 329 25 HOH HOH . E 4 HOH A 30 330 80 HOH HOH . E 4 HOH A 31 331 37 HOH HOH . E 4 HOH A 32 332 89 HOH HOH . E 4 HOH A 33 333 216 HOH HOH . E 4 HOH A 34 334 57 HOH HOH . E 4 HOH A 35 335 58 HOH HOH . E 4 HOH A 36 336 44 HOH HOH . E 4 HOH A 37 337 146 HOH HOH . E 4 HOH A 38 338 22 HOH HOH . E 4 HOH A 39 339 183 HOH HOH . E 4 HOH A 40 340 294 HOH HOH . E 4 HOH A 41 341 10 HOH HOH . E 4 HOH A 42 342 208 HOH HOH . E 4 HOH A 43 343 126 HOH HOH . E 4 HOH A 44 344 297 HOH HOH . E 4 HOH A 45 345 68 HOH HOH . E 4 HOH A 46 346 155 HOH HOH . E 4 HOH A 47 347 41 HOH HOH . E 4 HOH A 48 348 143 HOH HOH . E 4 HOH A 49 349 4 HOH HOH . E 4 HOH A 50 350 12 HOH HOH . E 4 HOH A 51 351 312 HOH HOH . E 4 HOH A 52 352 149 HOH HOH . E 4 HOH A 53 353 122 HOH HOH . E 4 HOH A 54 354 81 HOH HOH . E 4 HOH A 55 355 321 HOH HOH . E 4 HOH A 56 356 302 HOH HOH . E 4 HOH A 57 357 196 HOH HOH . E 4 HOH A 58 358 36 HOH HOH . E 4 HOH A 59 359 61 HOH HOH . E 4 HOH A 60 360 129 HOH HOH . E 4 HOH A 61 361 205 HOH HOH . E 4 HOH A 62 362 33 HOH HOH . E 4 HOH A 63 363 171 HOH HOH . E 4 HOH A 64 364 151 HOH HOH . E 4 HOH A 65 365 247 HOH HOH . E 4 HOH A 66 366 234 HOH HOH . E 4 HOH A 67 367 46 HOH HOH . E 4 HOH A 68 368 156 HOH HOH . E 4 HOH A 69 369 60 HOH HOH . E 4 HOH A 70 370 30 HOH HOH . E 4 HOH A 71 371 29 HOH HOH . E 4 HOH A 72 372 95 HOH HOH . E 4 HOH A 73 373 230 HOH HOH . E 4 HOH A 74 374 161 HOH HOH . E 4 HOH A 75 375 27 HOH HOH . E 4 HOH A 76 376 17 HOH HOH . E 4 HOH A 77 377 270 HOH HOH . E 4 HOH A 78 378 139 HOH HOH . E 4 HOH A 79 379 9 HOH HOH . E 4 HOH A 80 380 259 HOH HOH . E 4 HOH A 81 381 248 HOH HOH . E 4 HOH A 82 382 6 HOH HOH . E 4 HOH A 83 383 85 HOH HOH . E 4 HOH A 84 384 59 HOH HOH . E 4 HOH A 85 385 16 HOH HOH . E 4 HOH A 86 386 226 HOH HOH . E 4 HOH A 87 387 264 HOH HOH . E 4 HOH A 88 388 26 HOH HOH . E 4 HOH A 89 389 117 HOH HOH . E 4 HOH A 90 390 130 HOH HOH . E 4 HOH A 91 391 45 HOH HOH . E 4 HOH A 92 392 114 HOH HOH . E 4 HOH A 93 393 43 HOH HOH . E 4 HOH A 94 394 163 HOH HOH . E 4 HOH A 95 395 109 HOH HOH . E 4 HOH A 96 396 204 HOH HOH . E 4 HOH A 97 397 243 HOH HOH . E 4 HOH A 98 398 158 HOH HOH . E 4 HOH A 99 399 128 HOH HOH . E 4 HOH A 100 400 100 HOH HOH . E 4 HOH A 101 401 104 HOH HOH . E 4 HOH A 102 402 125 HOH HOH . E 4 HOH A 103 403 237 HOH HOH . E 4 HOH A 104 404 227 HOH HOH . E 4 HOH A 105 405 289 HOH HOH . E 4 HOH A 106 406 63 HOH HOH . E 4 HOH A 107 407 144 HOH HOH . E 4 HOH A 108 408 108 HOH HOH . E 4 HOH A 109 409 319 HOH HOH . E 4 HOH A 110 410 102 HOH HOH . E 4 HOH A 111 411 268 HOH HOH . E 4 HOH A 112 412 266 HOH HOH . E 4 HOH A 113 413 293 HOH HOH . E 4 HOH A 114 414 72 HOH HOH . E 4 HOH A 115 415 188 HOH HOH . E 4 HOH A 116 416 91 HOH HOH . E 4 HOH A 117 417 74 HOH HOH . E 4 HOH A 118 418 96 HOH HOH . E 4 HOH A 119 419 307 HOH HOH . E 4 HOH A 120 420 219 HOH HOH . E 4 HOH A 121 421 174 HOH HOH . E 4 HOH A 122 422 186 HOH HOH . E 4 HOH A 123 423 69 HOH HOH . E 4 HOH A 124 424 164 HOH HOH . E 4 HOH A 125 425 280 HOH HOH . E 4 HOH A 126 426 193 HOH HOH . E 4 HOH A 127 427 238 HOH HOH . E 4 HOH A 128 428 298 HOH HOH . E 4 HOH A 129 429 290 HOH HOH . E 4 HOH A 130 430 272 HOH HOH . E 4 HOH A 131 431 261 HOH HOH . E 4 HOH A 132 432 225 HOH HOH . E 4 HOH A 133 433 250 HOH HOH . E 4 HOH A 134 434 55 HOH HOH . E 4 HOH A 135 435 221 HOH HOH . E 4 HOH A 136 436 213 HOH HOH . E 4 HOH A 137 437 105 HOH HOH . E 4 HOH A 138 438 255 HOH HOH . E 4 HOH A 139 439 202 HOH HOH . E 4 HOH A 140 440 322 HOH HOH . E 4 HOH A 141 441 310 HOH HOH . E 4 HOH A 142 442 203 HOH HOH . E 4 HOH A 143 443 316 HOH HOH . E 4 HOH A 144 444 215 HOH HOH . E 4 HOH A 145 445 229 HOH HOH . E 4 HOH A 146 446 277 HOH HOH . E 4 HOH A 147 447 269 HOH HOH . E 4 HOH A 148 448 274 HOH HOH . E 4 HOH A 149 449 254 HOH HOH . E 4 HOH A 150 450 273 HOH HOH . F 4 HOH B 1 401 190 HOH HOH . F 4 HOH B 2 402 165 HOH HOH . F 4 HOH B 3 403 279 HOH HOH . F 4 HOH B 4 404 172 HOH HOH . F 4 HOH B 5 405 106 HOH HOH . F 4 HOH B 6 406 315 HOH HOH . F 4 HOH B 7 407 257 HOH HOH . F 4 HOH B 8 408 82 HOH HOH . F 4 HOH B 9 409 288 HOH HOH . F 4 HOH B 10 410 5 HOH HOH . F 4 HOH B 11 411 111 HOH HOH . F 4 HOH B 12 412 303 HOH HOH . F 4 HOH B 13 413 275 HOH HOH . F 4 HOH B 14 414 148 HOH HOH . F 4 HOH B 15 415 140 HOH HOH . F 4 HOH B 16 416 76 HOH HOH . F 4 HOH B 17 417 147 HOH HOH . F 4 HOH B 18 418 79 HOH HOH . F 4 HOH B 19 419 252 HOH HOH . F 4 HOH B 20 420 154 HOH HOH . F 4 HOH B 21 421 182 HOH HOH . F 4 HOH B 22 422 67 HOH HOH . F 4 HOH B 23 423 178 HOH HOH . F 4 HOH B 24 424 232 HOH HOH . F 4 HOH B 25 425 1 HOH HOH . F 4 HOH B 26 426 159 HOH HOH . F 4 HOH B 27 427 49 HOH HOH . F 4 HOH B 28 428 191 HOH HOH . F 4 HOH B 29 429 32 HOH HOH . F 4 HOH B 30 430 99 HOH HOH . F 4 HOH B 31 431 211 HOH HOH . F 4 HOH B 32 432 224 HOH HOH . F 4 HOH B 33 433 328 HOH HOH . F 4 HOH B 34 434 21 HOH HOH . F 4 HOH B 35 435 39 HOH HOH . F 4 HOH B 36 436 98 HOH HOH . F 4 HOH B 37 437 135 HOH HOH . F 4 HOH B 38 438 283 HOH HOH . F 4 HOH B 39 439 28 HOH HOH . F 4 HOH B 40 440 170 HOH HOH . F 4 HOH B 41 441 13 HOH HOH . F 4 HOH B 42 442 214 HOH HOH . F 4 HOH B 43 443 38 HOH HOH . F 4 HOH B 44 444 20 HOH HOH . F 4 HOH B 45 445 73 HOH HOH . F 4 HOH B 46 446 84 HOH HOH . F 4 HOH B 47 447 3 HOH HOH . F 4 HOH B 48 448 75 HOH HOH . F 4 HOH B 49 449 18 HOH HOH . F 4 HOH B 50 450 278 HOH HOH . F 4 HOH B 51 451 64 HOH HOH . F 4 HOH B 52 452 53 HOH HOH . F 4 HOH B 53 453 199 HOH HOH . F 4 HOH B 54 454 313 HOH HOH . F 4 HOH B 55 455 173 HOH HOH . F 4 HOH B 56 456 51 HOH HOH . F 4 HOH B 57 457 93 HOH HOH . F 4 HOH B 58 458 24 HOH HOH . F 4 HOH B 59 459 71 HOH HOH . F 4 HOH B 60 460 175 HOH HOH . F 4 HOH B 61 461 118 HOH HOH . F 4 HOH B 62 462 262 HOH HOH . F 4 HOH B 63 463 249 HOH HOH . F 4 HOH B 64 464 48 HOH HOH . F 4 HOH B 65 465 8 HOH HOH . F 4 HOH B 66 466 86 HOH HOH . F 4 HOH B 67 467 153 HOH HOH . F 4 HOH B 68 468 15 HOH HOH . F 4 HOH B 69 469 52 HOH HOH . F 4 HOH B 70 470 212 HOH HOH . F 4 HOH B 71 471 180 HOH HOH . F 4 HOH B 72 472 23 HOH HOH . F 4 HOH B 73 473 116 HOH HOH . F 4 HOH B 74 474 94 HOH HOH . F 4 HOH B 75 475 50 HOH HOH . F 4 HOH B 76 476 162 HOH HOH . F 4 HOH B 77 477 110 HOH HOH . F 4 HOH B 78 478 184 HOH HOH . F 4 HOH B 79 479 31 HOH HOH . F 4 HOH B 80 480 134 HOH HOH . F 4 HOH B 81 481 62 HOH HOH . F 4 HOH B 82 482 218 HOH HOH . F 4 HOH B 83 483 11 HOH HOH . F 4 HOH B 84 484 244 HOH HOH . F 4 HOH B 85 485 35 HOH HOH . F 4 HOH B 86 486 166 HOH HOH . F 4 HOH B 87 487 14 HOH HOH . F 4 HOH B 88 488 169 HOH HOH . F 4 HOH B 89 489 19 HOH HOH . F 4 HOH B 90 490 142 HOH HOH . F 4 HOH B 91 491 176 HOH HOH . F 4 HOH B 92 492 78 HOH HOH . F 4 HOH B 93 493 177 HOH HOH . F 4 HOH B 94 494 145 HOH HOH . F 4 HOH B 95 495 7 HOH HOH . F 4 HOH B 96 496 220 HOH HOH . F 4 HOH B 97 497 120 HOH HOH . F 4 HOH B 98 498 66 HOH HOH . F 4 HOH B 99 499 54 HOH HOH . F 4 HOH B 100 500 241 HOH HOH . F 4 HOH B 101 501 223 HOH HOH . F 4 HOH B 102 502 56 HOH HOH . F 4 HOH B 103 503 97 HOH HOH . F 4 HOH B 104 504 160 HOH HOH . F 4 HOH B 105 505 137 HOH HOH . F 4 HOH B 106 506 222 HOH HOH . F 4 HOH B 107 507 239 HOH HOH . F 4 HOH B 108 508 103 HOH HOH . F 4 HOH B 109 509 101 HOH HOH . F 4 HOH B 110 510 77 HOH HOH . F 4 HOH B 111 511 253 HOH HOH . F 4 HOH B 112 512 189 HOH HOH . F 4 HOH B 113 513 326 HOH HOH . F 4 HOH B 114 514 217 HOH HOH . F 4 HOH B 115 515 240 HOH HOH . F 4 HOH B 116 516 150 HOH HOH . F 4 HOH B 117 517 309 HOH HOH . F 4 HOH B 118 518 210 HOH HOH . F 4 HOH B 119 519 90 HOH HOH . F 4 HOH B 120 520 124 HOH HOH . F 4 HOH B 121 521 136 HOH HOH . F 4 HOH B 122 522 167 HOH HOH . F 4 HOH B 123 523 271 HOH HOH . F 4 HOH B 124 524 119 HOH HOH . F 4 HOH B 125 525 192 HOH HOH . F 4 HOH B 126 526 40 HOH HOH . F 4 HOH B 127 527 306 HOH HOH . F 4 HOH B 128 528 327 HOH HOH . F 4 HOH B 129 529 187 HOH HOH . F 4 HOH B 130 530 132 HOH HOH . F 4 HOH B 131 531 127 HOH HOH . F 4 HOH B 132 532 47 HOH HOH . F 4 HOH B 133 533 42 HOH HOH . F 4 HOH B 134 534 299 HOH HOH . F 4 HOH B 135 535 325 HOH HOH . F 4 HOH B 136 536 123 HOH HOH . F 4 HOH B 137 537 260 HOH HOH . F 4 HOH B 138 538 113 HOH HOH . F 4 HOH B 139 539 284 HOH HOH . F 4 HOH B 140 540 265 HOH HOH . F 4 HOH B 141 541 258 HOH HOH . F 4 HOH B 142 542 209 HOH HOH . F 4 HOH B 143 543 286 HOH HOH . F 4 HOH B 144 544 242 HOH HOH . F 4 HOH B 145 545 228 HOH HOH . F 4 HOH B 146 546 256 HOH HOH . F 4 HOH B 147 547 305 HOH HOH . F 4 HOH B 148 548 314 HOH HOH . F 4 HOH B 149 549 194 HOH HOH . F 4 HOH B 150 550 301 HOH HOH . F 4 HOH B 151 551 263 HOH HOH . F 4 HOH B 152 552 282 HOH HOH . F 4 HOH B 153 553 295 HOH HOH . F 4 HOH B 154 554 157 HOH HOH . F 4 HOH B 155 555 200 HOH HOH . F 4 HOH B 156 556 181 HOH HOH . F 4 HOH B 157 557 233 HOH HOH . F 4 HOH B 158 558 292 HOH HOH . F 4 HOH B 159 559 276 HOH HOH . F 4 HOH B 160 560 141 HOH HOH . F 4 HOH B 161 561 300 HOH HOH . F 4 HOH B 162 562 287 HOH HOH . F 4 HOH B 163 563 304 HOH HOH . F 4 HOH B 164 564 236 HOH HOH . F 4 HOH B 165 565 308 HOH HOH . F 4 HOH B 166 566 152 HOH HOH . F 4 HOH B 167 567 324 HOH HOH . F 4 HOH B 168 568 207 HOH HOH . F 4 HOH B 169 569 245 HOH HOH . F 4 HOH B 170 570 281 HOH HOH . F 4 HOH B 171 571 138 HOH HOH . F 4 HOH B 172 572 267 HOH HOH . F 4 HOH B 173 573 206 HOH HOH . F 4 HOH B 174 574 285 HOH HOH . F 4 HOH B 175 575 131 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 -10.633 -4.341 -49.788 1 27.09 ? C1 GOL 302 B 1 HETATM 2 O O1 GOL . . . D 3 -11.969 -3.863 -49.501 1 20.69 ? O1 GOL 302 B 1 HETATM 3 C C2 GOL . . . D 3 -10.309 -5.414 -48.738 1 28.6 ? C2 GOL 302 B 1 HETATM 4 O O2 GOL . . . D 3 -11.193 -6.509 -48.57 1 42.89 ? O2 GOL 302 B 1 HETATM 5 C C3 GOL . . . D 3 -9.991 -4.717 -47.418 1 29.6 ? C3 GOL 302 B 1 HETATM 6 O O3 GOL . . . D 3 -8.553 -4.423 -47.453 1 22.01 ? O3 GOL 302 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #