data_5DWF # _model_server_result.job_id 46j52JfvMAmkIZsjHTHEMA _model_server_result.datetime_utc '2024-11-05 04:42:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dwf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":202}' # _entry.id 5DWF # _exptl.entry_id 5DWF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5DWF _cell.length_a 88.775 _cell.length_b 101.525 _cell.length_c 163.087 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DWF _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,I 1 1 B,J 2 1 C,E,F,K 3 1 D,G,H,L 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 1 A CYS 6 1_555 A SG CYS 125 A CYS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf2 A SG CYS 17 A CYS 22 1_555 A SG CYS 62 A CYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? disulf ? disulf3 A SG CYS 38 A CYS 43 1_555 A SG CYS 44 A CYS 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? disulf ? disulf4 B SG CYS 1 B CYS 6 1_555 B SG CYS 125 B CYS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf5 B SG CYS 17 B CYS 22 1_555 B SG CYS 62 B CYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? disulf ? disulf6 B SG CYS 38 B CYS 43 1_555 B SG CYS 44 B CYS 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? disulf ? disulf7 C SG CYS 1 C CYS 6 1_555 C SG CYS 125 C CYS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? disulf ? disulf8 C SG CYS 17 C CYS 22 1_555 C SG CYS 62 C CYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf9 C SG CYS 38 C CYS 43 1_555 C SG CYS 44 C CYS 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? disulf ? disulf10 D SG CYS 1 D CYS 6 1_555 D SG CYS 125 D CYS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? disulf ? disulf11 D SG CYS 17 D CYS 22 1_555 D SG CYS 62 D CYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf12 D SG CYS 38 D CYS 43 1_555 D SG CYS 44 D CYS 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5DWF _atom_sites.fract_transf_matrix[1][1] 0.011264 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00985 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006132 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 TLA C 1 201 201 TLA TLA . F 3 EDO C 1 202 202 EDO EDO . G 4 GOL D 1 201 201 GOL GOL . H 3 EDO D 1 202 202 EDO EDO . I 5 HOH A 1 201 201 HOH HOH . I 5 HOH A 2 202 202 HOH HOH . I 5 HOH A 3 203 203 HOH HOH . I 5 HOH A 4 204 204 HOH HOH . I 5 HOH A 5 205 205 HOH HOH . I 5 HOH A 6 206 206 HOH HOH . I 5 HOH A 7 207 207 HOH HOH . I 5 HOH A 8 208 208 HOH HOH . I 5 HOH A 9 209 209 HOH HOH . I 5 HOH A 10 210 210 HOH HOH . I 5 HOH A 11 211 211 HOH HOH . I 5 HOH A 12 212 212 HOH HOH . I 5 HOH A 13 213 213 HOH HOH . I 5 HOH A 14 214 214 HOH HOH . I 5 HOH A 15 215 215 HOH HOH . I 5 HOH A 16 216 216 HOH HOH . I 5 HOH A 17 217 217 HOH HOH . I 5 HOH A 18 218 218 HOH HOH . I 5 HOH A 19 219 219 HOH HOH . I 5 HOH A 20 220 220 HOH HOH . I 5 HOH A 21 221 221 HOH HOH . I 5 HOH A 22 222 222 HOH HOH . I 5 HOH A 23 223 223 HOH HOH . I 5 HOH A 24 224 224 HOH HOH . I 5 HOH A 25 225 225 HOH HOH . I 5 HOH A 26 226 226 HOH HOH . I 5 HOH A 27 227 227 HOH HOH . I 5 HOH A 28 228 228 HOH HOH . I 5 HOH A 29 229 229 HOH HOH . I 5 HOH A 30 230 230 HOH HOH . I 5 HOH A 31 231 231 HOH HOH . I 5 HOH A 32 232 232 HOH HOH . I 5 HOH A 33 233 233 HOH HOH . I 5 HOH A 34 234 234 HOH HOH . I 5 HOH A 35 235 235 HOH HOH . I 5 HOH A 36 236 236 HOH HOH . I 5 HOH A 37 237 237 HOH HOH . I 5 HOH A 38 238 238 HOH HOH . I 5 HOH A 39 239 239 HOH HOH . I 5 HOH A 40 240 240 HOH HOH . I 5 HOH A 41 241 241 HOH HOH . I 5 HOH A 42 242 242 HOH HOH . I 5 HOH A 43 243 243 HOH HOH . I 5 HOH A 44 244 244 HOH HOH . I 5 HOH A 45 245 245 HOH HOH . I 5 HOH A 46 246 246 HOH HOH . I 5 HOH A 47 247 247 HOH HOH . I 5 HOH A 48 248 248 HOH HOH . I 5 HOH A 49 249 249 HOH HOH . I 5 HOH A 50 250 250 HOH HOH . I 5 HOH A 51 251 251 HOH HOH . I 5 HOH A 52 252 252 HOH HOH . I 5 HOH A 53 253 253 HOH HOH . I 5 HOH A 54 254 254 HOH HOH . I 5 HOH A 55 255 255 HOH HOH . I 5 HOH A 56 256 256 HOH HOH . I 5 HOH A 57 257 257 HOH HOH . J 5 HOH B 1 201 201 HOH HOH . J 5 HOH B 2 202 202 HOH HOH . J 5 HOH B 3 203 203 HOH HOH . J 5 HOH B 4 204 204 HOH HOH . J 5 HOH B 5 205 205 HOH HOH . J 5 HOH B 6 206 206 HOH HOH . J 5 HOH B 7 207 207 HOH HOH . J 5 HOH B 8 208 208 HOH HOH . J 5 HOH B 9 209 209 HOH HOH . J 5 HOH B 10 210 210 HOH HOH . J 5 HOH B 11 211 211 HOH HOH . J 5 HOH B 12 212 212 HOH HOH . J 5 HOH B 13 213 213 HOH HOH . J 5 HOH B 14 214 214 HOH HOH . J 5 HOH B 15 215 215 HOH HOH . J 5 HOH B 16 216 216 HOH HOH . J 5 HOH B 17 217 217 HOH HOH . J 5 HOH B 18 218 218 HOH HOH . J 5 HOH B 19 219 219 HOH HOH . J 5 HOH B 20 220 220 HOH HOH . J 5 HOH B 21 221 221 HOH HOH . J 5 HOH B 22 222 222 HOH HOH . J 5 HOH B 23 223 223 HOH HOH . J 5 HOH B 24 224 224 HOH HOH . J 5 HOH B 25 225 225 HOH HOH . J 5 HOH B 26 226 226 HOH HOH . J 5 HOH B 27 227 227 HOH HOH . J 5 HOH B 28 228 228 HOH HOH . J 5 HOH B 29 229 229 HOH HOH . J 5 HOH B 30 230 230 HOH HOH . J 5 HOH B 31 231 231 HOH HOH . J 5 HOH B 32 232 232 HOH HOH . J 5 HOH B 33 233 233 HOH HOH . J 5 HOH B 34 234 234 HOH HOH . J 5 HOH B 35 235 235 HOH HOH . J 5 HOH B 36 236 236 HOH HOH . J 5 HOH B 37 237 237 HOH HOH . J 5 HOH B 38 238 238 HOH HOH . J 5 HOH B 39 239 239 HOH HOH . J 5 HOH B 40 240 240 HOH HOH . J 5 HOH B 41 241 241 HOH HOH . J 5 HOH B 42 242 242 HOH HOH . J 5 HOH B 43 243 243 HOH HOH . J 5 HOH B 44 244 244 HOH HOH . J 5 HOH B 45 245 245 HOH HOH . J 5 HOH B 46 246 246 HOH HOH . J 5 HOH B 47 247 247 HOH HOH . J 5 HOH B 48 248 248 HOH HOH . J 5 HOH B 49 249 249 HOH HOH . J 5 HOH B 50 250 250 HOH HOH . J 5 HOH B 51 251 251 HOH HOH . J 5 HOH B 52 252 252 HOH HOH . J 5 HOH B 53 253 253 HOH HOH . K 5 HOH C 1 301 301 HOH HOH . K 5 HOH C 2 302 302 HOH HOH . K 5 HOH C 3 303 303 HOH HOH . K 5 HOH C 4 304 304 HOH HOH . K 5 HOH C 5 305 305 HOH HOH . K 5 HOH C 6 306 306 HOH HOH . K 5 HOH C 7 307 307 HOH HOH . K 5 HOH C 8 308 308 HOH HOH . K 5 HOH C 9 309 309 HOH HOH . K 5 HOH C 10 310 310 HOH HOH . K 5 HOH C 11 311 311 HOH HOH . K 5 HOH C 12 312 312 HOH HOH . K 5 HOH C 13 313 313 HOH HOH . K 5 HOH C 14 314 314 HOH HOH . K 5 HOH C 15 315 315 HOH HOH . K 5 HOH C 16 316 316 HOH HOH . K 5 HOH C 17 317 317 HOH HOH . K 5 HOH C 18 318 318 HOH HOH . K 5 HOH C 19 319 319 HOH HOH . K 5 HOH C 20 320 320 HOH HOH . K 5 HOH C 21 321 321 HOH HOH . K 5 HOH C 22 322 322 HOH HOH . K 5 HOH C 23 323 323 HOH HOH . K 5 HOH C 24 324 324 HOH HOH . K 5 HOH C 25 325 325 HOH HOH . K 5 HOH C 26 326 326 HOH HOH . K 5 HOH C 27 327 327 HOH HOH . K 5 HOH C 28 328 328 HOH HOH . K 5 HOH C 29 329 329 HOH HOH . K 5 HOH C 30 330 330 HOH HOH . K 5 HOH C 31 331 331 HOH HOH . K 5 HOH C 32 332 332 HOH HOH . K 5 HOH C 33 333 333 HOH HOH . K 5 HOH C 34 334 334 HOH HOH . K 5 HOH C 35 335 335 HOH HOH . K 5 HOH C 36 336 336 HOH HOH . K 5 HOH C 37 337 337 HOH HOH . K 5 HOH C 38 338 338 HOH HOH . K 5 HOH C 39 339 339 HOH HOH . K 5 HOH C 40 340 340 HOH HOH . K 5 HOH C 41 341 341 HOH HOH . K 5 HOH C 42 342 342 HOH HOH . K 5 HOH C 43 343 343 HOH HOH . K 5 HOH C 44 344 344 HOH HOH . K 5 HOH C 45 345 345 HOH HOH . K 5 HOH C 46 346 346 HOH HOH . K 5 HOH C 47 347 347 HOH HOH . K 5 HOH C 48 348 348 HOH HOH . K 5 HOH C 49 349 349 HOH HOH . K 5 HOH C 50 350 350 HOH HOH . K 5 HOH C 51 351 351 HOH HOH . K 5 HOH C 52 352 352 HOH HOH . K 5 HOH C 53 353 353 HOH HOH . K 5 HOH C 54 354 354 HOH HOH . K 5 HOH C 55 355 355 HOH HOH . K 5 HOH C 56 356 356 HOH HOH . K 5 HOH C 57 357 357 HOH HOH . K 5 HOH C 58 358 358 HOH HOH . K 5 HOH C 59 359 359 HOH HOH . K 5 HOH C 60 360 360 HOH HOH . K 5 HOH C 61 361 361 HOH HOH . K 5 HOH C 62 362 362 HOH HOH . K 5 HOH C 63 363 363 HOH HOH . K 5 HOH C 64 364 364 HOH HOH . K 5 HOH C 65 365 365 HOH HOH . K 5 HOH C 66 366 366 HOH HOH . K 5 HOH C 67 367 367 HOH HOH . K 5 HOH C 68 368 368 HOH HOH . K 5 HOH C 69 369 369 HOH HOH . K 5 HOH C 70 370 370 HOH HOH . K 5 HOH C 71 371 371 HOH HOH . K 5 HOH C 72 372 372 HOH HOH . K 5 HOH C 73 373 373 HOH HOH . K 5 HOH C 74 374 374 HOH HOH . K 5 HOH C 75 375 375 HOH HOH . K 5 HOH C 76 376 376 HOH HOH . K 5 HOH C 77 377 377 HOH HOH . L 5 HOH D 1 301 301 HOH HOH . L 5 HOH D 2 302 302 HOH HOH . L 5 HOH D 3 303 303 HOH HOH . L 5 HOH D 4 304 304 HOH HOH . L 5 HOH D 5 305 306 HOH HOH . L 5 HOH D 6 306 307 HOH HOH . L 5 HOH D 7 307 308 HOH HOH . L 5 HOH D 8 308 309 HOH HOH . L 5 HOH D 9 309 310 HOH HOH . L 5 HOH D 10 310 311 HOH HOH . L 5 HOH D 11 311 312 HOH HOH . L 5 HOH D 12 312 305 HOH HOH . L 5 HOH D 13 313 313 HOH HOH . L 5 HOH D 14 314 314 HOH HOH . L 5 HOH D 15 315 315 HOH HOH . L 5 HOH D 16 316 316 HOH HOH . L 5 HOH D 17 317 317 HOH HOH . L 5 HOH D 18 318 318 HOH HOH . L 5 HOH D 19 319 319 HOH HOH . L 5 HOH D 20 320 320 HOH HOH . L 5 HOH D 21 321 321 HOH HOH . L 5 HOH D 22 322 322 HOH HOH . L 5 HOH D 23 323 323 HOH HOH . L 5 HOH D 24 324 324 HOH HOH . L 5 HOH D 25 325 325 HOH HOH . L 5 HOH D 26 326 326 HOH HOH . L 5 HOH D 27 327 327 HOH HOH . L 5 HOH D 28 328 328 HOH HOH . L 5 HOH D 29 329 329 HOH HOH . L 5 HOH D 30 330 330 HOH HOH . L 5 HOH D 31 331 331 HOH HOH . L 5 HOH D 32 332 332 HOH HOH . L 5 HOH D 33 333 333 HOH HOH . L 5 HOH D 34 334 334 HOH HOH . L 5 HOH D 35 335 335 HOH HOH . L 5 HOH D 36 336 336 HOH HOH . L 5 HOH D 37 337 337 HOH HOH . L 5 HOH D 38 338 338 HOH HOH . L 5 HOH D 39 339 339 HOH HOH . L 5 HOH D 40 340 340 HOH HOH . L 5 HOH D 41 341 341 HOH HOH . L 5 HOH D 42 342 342 HOH HOH . L 5 HOH D 43 343 343 HOH HOH . L 5 HOH D 44 344 344 HOH HOH . L 5 HOH D 45 345 345 HOH HOH . L 5 HOH D 46 346 346 HOH HOH . L 5 HOH D 47 347 347 HOH HOH . L 5 HOH D 48 348 348 HOH HOH . L 5 HOH D 49 349 349 HOH HOH . L 5 HOH D 50 350 350 HOH HOH . L 5 HOH D 51 351 351 HOH HOH . L 5 HOH D 52 352 352 HOH HOH . L 5 HOH D 53 353 353 HOH HOH . L 5 HOH D 54 354 354 HOH HOH . L 5 HOH D 55 355 355 HOH HOH . L 5 HOH D 56 356 356 HOH HOH . L 5 HOH D 57 357 357 HOH HOH . L 5 HOH D 58 358 358 HOH HOH . L 5 HOH D 59 359 359 HOH HOH . L 5 HOH D 60 360 360 HOH HOH . L 5 HOH D 61 361 361 HOH HOH . L 5 HOH D 62 362 362 HOH HOH . L 5 HOH D 63 363 363 HOH HOH . L 5 HOH D 64 364 364 HOH HOH . L 5 HOH D 65 365 365 HOH HOH . L 5 HOH D 66 366 366 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 3 -6.345 3.309 -9.487 1 37.98 ? C1 EDO 202 C 1 HETATM 2 O O1 EDO . . . F 3 -5.952 4.686 -9.46 1 38.5 ? O1 EDO 202 C 1 HETATM 3 C C2 EDO . . . F 3 -5.096 2.439 -9.487 1 40.35 ? C2 EDO 202 C 1 HETATM 4 O O2 EDO . . . F 3 -4.867 1.968 -10.835 1 43.48 ? O2 EDO 202 C 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #