data_5DWK
#
_model_server_result.job_id            HBJC47iEV4DuATdyfUY1yw 
_model_server_result.datetime_utc      '2024-11-25 10:42:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5dwk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":201}' 
#
_entry.id    5DWK 
#
_exptl.entry_id    5DWK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              314.46 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5DWK 
_cell.length_a            75.29 
_cell.length_b            91.57 
_cell.length_c            143.72 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5DWK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,D,G,H,I,J,K,L,M,N,O,W,X,Y,AA 1 1 
C,E,F,P,Q,R,S,T,U,V,Z,BA,CA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 W N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 116 A ASP 107 1_555 O NA NA . B NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.83 ? 
metalc ? metalc2 B O SER 69 B SER 60 1_555 O NA NA . B NA 205 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.71 ? 
metalc ? metalc3 B O SER 69 B SER 60 1_555 O NA NA . B NA 205 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.597 ? 
metalc ? metalc4 C OE1 GLU 37 C GLU 28 1_555 T ZN ZN . C ZN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? 
metalc ? metalc5 C OE1 GLU 85 C GLU 76 1_555 T ZN ZN . C ZN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? 
metalc ? metalc6 T ZN ZN . C ZN 205 1_555 V O ACT . C ACT 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? 
#
_chem_comp.formula           'C18 H34 O4' 
_chem_comp.formula_weight    314.46 
_chem_comp.id                78N 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '7.8 MONOACYLGLYCEROL (2R)' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O22 C19 78N sing 56 n n 
C19 C18 78N sing 57 n n 
C18 O20 78N sing 58 n n 
C18 C17 78N sing 59 n n 
C17 O16 78N sing 60 n n 
O16 C8 78N sing 61 n n 
C8 O15 78N doub 62 n n 
C8 C7 78N sing 63 n n 
C7 C6 78N sing 64 n n 
C6 C5 78N sing 65 n n 
C5 C4 78N sing 66 n n 
C4 C3 78N sing 67 n n 
C3 C2 78N sing 68 n n 
C2 C1 78N doub 69 z n 
C1 C9 78N sing 70 n n 
C9 C10 78N sing 71 n n 
C10 C11 78N sing 72 n n 
C11 C12 78N sing 73 n n 
C12 C13 78N sing 74 n n 
C13 C14 78N sing 75 n n 
C15 C14 78N sing 76 n n 
O22 H22 78N sing 77 n n 
C19 H191 78N sing 78 n n 
C19 H192 78N sing 79 n n 
C18 H18 78N sing 80 n n 
O20 H20 78N sing 81 n n 
C17 H171 78N sing 82 n n 
C17 H172 78N sing 83 n n 
C7 H71 78N sing 84 n n 
C7 H72 78N sing 85 n n 
C6 H61C 78N sing 86 n n 
C6 H62C 78N sing 87 n n 
C5 H51C 78N sing 88 n n 
C5 H52C 78N sing 89 n n 
C4 H41C 78N sing 90 n n 
C4 H42C 78N sing 91 n n 
C3 H31C 78N sing 92 n n 
C3 H32C 78N sing 93 n n 
C2 H2 78N sing 94 n n 
C1 H1 78N sing 95 n n 
C9 H91C 78N sing 96 n n 
C9 H92C 78N sing 97 n n 
C10 H101 78N sing 98 n n 
C10 H102 78N sing 99 n n 
C11 H111 78N sing 100 n n 
C11 H112 78N sing 101 n n 
C12 H121 78N sing 102 n n 
C12 H122 78N sing 103 n n 
C13 H131 78N sing 104 n n 
C13 H132 78N sing 105 n n 
C14 H141 78N sing 106 n n 
C14 H142 78N sing 107 n n 
C15 H151 78N sing 108 n n 
C15 H152 78N sing 109 n n 
C15 H153 78N sing 110 n n 
#
_atom_sites.entry_id                     5DWK 
_atom_sites.fract_transf_matrix[1][1]    0.013282 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010921 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006958 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 78N A 1 201 1122 78N 78N . 
H 2 78N A 1 202 1123 78N 78N . 
I 2 78N A 1 203 1122 78N 78N . 
J 3 78M A 1 204 1127 78M 78M . 
K 2 78N B 1 201 1122 78N 78N . 
L 2 78N B 1 202 1123 78N 78N . 
M 2 78N B 1 203 1124 78N 78N . 
N 3 78M B 1 204 1126 78M 78M . 
O 4 NA B 1 205 1 NA NA . 
P 3 78M C 1 201 1125 78M 78M . 
Q 3 78M C 1 202 1125 78M 78M . 
R 3 78M C 1 203 1126 78M 78M . 
S 3 78M C 1 204 1128 78M 78M . 
T 5 ZN C 1 205 1 ZN ZN . 
U 6 CIT C 1 206 1 CIT FLC . 
V 7 ACT C 1 207 1 ACT ACT . 
W 2 78N D 1 201 1123 78N 78N . 
X 8 HOH A 1 301 54 HOH HOH . 
X 8 HOH A 2 302 25 HOH HOH . 
X 8 HOH A 3 303 2 HOH HOH . 
X 8 HOH A 4 304 23 HOH HOH . 
X 8 HOH A 5 305 11 HOH HOH . 
X 8 HOH A 6 306 5 HOH HOH . 
X 8 HOH A 7 307 31 HOH HOH . 
X 8 HOH A 8 308 14 HOH HOH . 
X 8 HOH A 9 309 56 HOH HOH . 
Y 8 HOH B 1 301 28 HOH HOH . 
Y 8 HOH B 2 302 29 HOH HOH . 
Y 8 HOH B 3 303 1 HOH HOH . 
Y 8 HOH B 4 304 7 HOH HOH . 
Y 8 HOH B 5 305 33 HOH HOH . 
Z 8 HOH C 1 301 17 HOH HOH . 
Z 8 HOH C 2 302 37 HOH HOH . 
Z 8 HOH C 3 303 16 HOH HOH . 
Z 8 HOH C 4 304 34 HOH HOH . 
AA 8 HOH D 1 301 51 HOH HOH . 
BA 8 HOH E 1 201 9 HOH HOH . 
BA 8 HOH E 2 202 12 HOH HOH . 
BA 8 HOH E 3 203 27 HOH HOH . 
BA 8 HOH E 4 204 43 HOH HOH . 
BA 8 HOH E 5 205 4 HOH HOH . 
BA 8 HOH E 6 206 8 HOH HOH . 
BA 8 HOH E 7 207 3 HOH HOH . 
BA 8 HOH E 8 208 26 HOH HOH . 
BA 8 HOH E 9 209 10 HOH HOH . 
BA 8 HOH E 10 210 46 HOH HOH . 
CA 8 HOH F 1 201 41 HOH HOH . 
CA 8 HOH F 2 202 6 HOH HOH . 
CA 8 HOH F 3 203 39 HOH HOH . 
CA 8 HOH F 4 204 52 HOH HOH . 
CA 8 HOH F 5 205 15 HOH HOH . 
CA 8 HOH F 6 206 19 HOH HOH . 
CA 8 HOH F 7 207 22 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O22 78N . . . G 2 49.004 56.181 91.639 1 91.66 ? O22 78N 201 A 1 
HETATM 2 C C19 78N . . . G 2 47.896 57.029 91.515 1 95.6 ? C19 78N 201 A 1 
HETATM 3 C C18 78N . . . G 2 46.686 56.216 91.055 1 97.41 ? C18 78N 201 A 1 
HETATM 4 O O20 78N . . . G 2 45.745 57.047 90.439 1 99.22 ? O20 78N 201 A 1 
HETATM 5 C C17 78N . . . G 2 47.134 55.139 90.069 1 100.14 ? C17 78N 201 A 1 
HETATM 6 O O16 78N . . . G 2 46.216 55.06 89.017 1 103.17 ? O16 78N 201 A 1 
HETATM 7 C C8 78N . . . G 2 45.276 54.032 89.142 1 99.53 ? C8 78N 201 A 1 
HETATM 8 O O15 78N . . . G 2 44.46 54.074 89.998 1 110.43 ? O15 78N 201 A 1 
HETATM 9 C C7 78N . . . G 2 45.293 52.853 88.174 1 88.08 ? C7 78N 201 A 1 
HETATM 10 C C6 78N . . . G 2 43.895 52.243 88.115 1 87.61 ? C6 78N 201 A 1 
HETATM 11 C C5 78N . . . G 2 43.749 51.411 86.842 1 101.98 ? C5 78N 201 A 1 
HETATM 12 C C4 78N . . . G 2 44.177 52.248 85.639 1 109.33 ? C4 78N 201 A 1 
HETATM 13 C C3 78N . . . G 2 43.114 52.161 84.548 1 101.85 ? C3 78N 201 A 1 
HETATM 14 C C2 78N . . . G 2 43.39 50.95 83.661 1 91.31 ? C2 78N 201 A 1 
HETATM 15 C C1 78N . . . G 2 42.752 50.82 82.515 1 89.65 ? C1 78N 201 A 1 
HETATM 16 C C9 78N . . . G 2 41.737 51.873 82.071 1 78.71 ? C9 78N 201 A 1 
HETATM 17 C C10 78N . . . G 2 41.415 51.676 80.592 1 72.28 ? C10 78N 201 A 1 
HETATM 18 C C11 78N . . . G 2 40.055 52.292 80.276 1 76.25 ? C11 78N 201 A 1 
HETATM 19 C C12 78N . . . G 2 40.006 52.649 78.791 1 87.99 ? C12 78N 201 A 1 
HETATM 20 C C13 78N . . . G 2 38.59 52.447 78.259 1 101.65 ? C13 78N 201 A 1 
HETATM 21 C C15 78N . . . G 2 36.707 53.517 77.014 1 116.84 ? C15 78N 201 A 1 
HETATM 22 C C14 78N . . . G 2 38.093 53.741 77.616 1 113.31 ? C14 78N 201 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           267 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           22 
#