data_5DWK # _model_server_result.job_id D1HtR3lJ6HvTJkYsxUKRYw _model_server_result.datetime_utc '2024-11-25 10:36:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dwk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":203}' # _entry.id 5DWK # _exptl.entry_id 5DWK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 314.46 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5DWK _cell.length_a 75.29 _cell.length_b 91.57 _cell.length_c 143.72 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DWK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,G,H,I,J,K,L,M,N,O,W,X,Y,AA 1 1 C,E,F,P,Q,R,S,T,U,V,Z,BA,CA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 116 A ASP 107 1_555 O NA NA . B NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.83 ? metalc ? metalc2 B O SER 69 B SER 60 1_555 O NA NA . B NA 205 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.71 ? metalc ? metalc3 B O SER 69 B SER 60 1_555 O NA NA . B NA 205 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.597 ? metalc ? metalc4 C OE1 GLU 37 C GLU 28 1_555 T ZN ZN . C ZN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc5 C OE1 GLU 85 C GLU 76 1_555 T ZN ZN . C ZN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc6 T ZN ZN . C ZN 205 1_555 V O ACT . C ACT 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? # _chem_comp.formula 'C18 H34 O4' _chem_comp.formula_weight 314.46 _chem_comp.id 78N _chem_comp.mon_nstd_flag . _chem_comp.name (2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '7.8 MONOACYLGLYCEROL (2R)' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O22 C19 78N sing 56 n n C19 C18 78N sing 57 n n C18 O20 78N sing 58 n n C18 C17 78N sing 59 n n C17 O16 78N sing 60 n n O16 C8 78N sing 61 n n C8 O15 78N doub 62 n n C8 C7 78N sing 63 n n C7 C6 78N sing 64 n n C6 C5 78N sing 65 n n C5 C4 78N sing 66 n n C4 C3 78N sing 67 n n C3 C2 78N sing 68 n n C2 C1 78N doub 69 z n C1 C9 78N sing 70 n n C9 C10 78N sing 71 n n C10 C11 78N sing 72 n n C11 C12 78N sing 73 n n C12 C13 78N sing 74 n n C13 C14 78N sing 75 n n C15 C14 78N sing 76 n n O22 H22 78N sing 77 n n C19 H191 78N sing 78 n n C19 H192 78N sing 79 n n C18 H18 78N sing 80 n n O20 H20 78N sing 81 n n C17 H171 78N sing 82 n n C17 H172 78N sing 83 n n C7 H71 78N sing 84 n n C7 H72 78N sing 85 n n C6 H61C 78N sing 86 n n C6 H62C 78N sing 87 n n C5 H51C 78N sing 88 n n C5 H52C 78N sing 89 n n C4 H41C 78N sing 90 n n C4 H42C 78N sing 91 n n C3 H31C 78N sing 92 n n C3 H32C 78N sing 93 n n C2 H2 78N sing 94 n n C1 H1 78N sing 95 n n C9 H91C 78N sing 96 n n C9 H92C 78N sing 97 n n C10 H101 78N sing 98 n n C10 H102 78N sing 99 n n C11 H111 78N sing 100 n n C11 H112 78N sing 101 n n C12 H121 78N sing 102 n n C12 H122 78N sing 103 n n C13 H131 78N sing 104 n n C13 H132 78N sing 105 n n C14 H141 78N sing 106 n n C14 H142 78N sing 107 n n C15 H151 78N sing 108 n n C15 H152 78N sing 109 n n C15 H153 78N sing 110 n n # _atom_sites.entry_id 5DWK _atom_sites.fract_transf_matrix[1][1] 0.013282 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010921 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006958 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 78N A 1 201 1122 78N 78N . H 2 78N A 1 202 1123 78N 78N . I 2 78N A 1 203 1122 78N 78N . J 3 78M A 1 204 1127 78M 78M . K 2 78N B 1 201 1122 78N 78N . L 2 78N B 1 202 1123 78N 78N . M 2 78N B 1 203 1124 78N 78N . N 3 78M B 1 204 1126 78M 78M . O 4 NA B 1 205 1 NA NA . P 3 78M C 1 201 1125 78M 78M . Q 3 78M C 1 202 1125 78M 78M . R 3 78M C 1 203 1126 78M 78M . S 3 78M C 1 204 1128 78M 78M . T 5 ZN C 1 205 1 ZN ZN . U 6 CIT C 1 206 1 CIT FLC . V 7 ACT C 1 207 1 ACT ACT . W 2 78N D 1 201 1123 78N 78N . X 8 HOH A 1 301 54 HOH HOH . X 8 HOH A 2 302 25 HOH HOH . X 8 HOH A 3 303 2 HOH HOH . X 8 HOH A 4 304 23 HOH HOH . X 8 HOH A 5 305 11 HOH HOH . X 8 HOH A 6 306 5 HOH HOH . X 8 HOH A 7 307 31 HOH HOH . X 8 HOH A 8 308 14 HOH HOH . X 8 HOH A 9 309 56 HOH HOH . Y 8 HOH B 1 301 28 HOH HOH . Y 8 HOH B 2 302 29 HOH HOH . Y 8 HOH B 3 303 1 HOH HOH . Y 8 HOH B 4 304 7 HOH HOH . Y 8 HOH B 5 305 33 HOH HOH . Z 8 HOH C 1 301 17 HOH HOH . Z 8 HOH C 2 302 37 HOH HOH . Z 8 HOH C 3 303 16 HOH HOH . Z 8 HOH C 4 304 34 HOH HOH . AA 8 HOH D 1 301 51 HOH HOH . BA 8 HOH E 1 201 9 HOH HOH . BA 8 HOH E 2 202 12 HOH HOH . BA 8 HOH E 3 203 27 HOH HOH . BA 8 HOH E 4 204 43 HOH HOH . BA 8 HOH E 5 205 4 HOH HOH . BA 8 HOH E 6 206 8 HOH HOH . BA 8 HOH E 7 207 3 HOH HOH . BA 8 HOH E 8 208 26 HOH HOH . BA 8 HOH E 9 209 10 HOH HOH . BA 8 HOH E 10 210 46 HOH HOH . CA 8 HOH F 1 201 41 HOH HOH . CA 8 HOH F 2 202 6 HOH HOH . CA 8 HOH F 3 203 39 HOH HOH . CA 8 HOH F 4 204 52 HOH HOH . CA 8 HOH F 5 205 15 HOH HOH . CA 8 HOH F 6 206 19 HOH HOH . CA 8 HOH F 7 207 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O22 78N . . . M 2 39.04 57.162 62.456 1 93.26 ? O22 78N 203 B 1 HETATM 2 C C19 78N . . . M 2 39.676 55.924 62.625 1 103.87 ? C19 78N 203 B 1 HETATM 3 C C18 78N . . . M 2 39.91 55.648 64.112 1 107.22 ? C18 78N 203 B 1 HETATM 4 O O20 78N . . . M 2 38.922 56.278 64.88 1 104 ? O20 78N 203 B 1 HETATM 5 C C17 78N . . . M 2 39.871 54.14 64.363 1 109.79 ? C17 78N 203 B 1 HETATM 6 O O16 78N . . . M 2 40.027 53.89 65.732 1 105.26 ? O16 78N 203 B 1 HETATM 7 C C8 78N . . . M 2 39.222 52.861 66.244 1 102.5 ? C8 78N 203 B 1 HETATM 8 O O15 78N . . . M 2 38.741 52.045 65.527 1 103.24 ? O15 78N 203 B 1 HETATM 9 C C7 78N . . . M 2 38.962 52.8 67.746 1 91.88 ? C7 78N 203 B 1 HETATM 10 C C6 78N . . . M 2 38.178 51.536 68.08 1 81.04 ? C6 78N 203 B 1 HETATM 11 C C5 78N . . . M 2 37.676 51.628 69.519 1 84.04 ? C5 78N 203 B 1 HETATM 12 C C4 78N . . . M 2 38.832 51.879 70.486 1 81.65 ? C4 78N 203 B 1 HETATM 13 C C3 78N . . . M 2 38.327 51.611 71.905 1 86.41 ? C3 78N 203 B 1 HETATM 14 C C2 78N . . . M 2 39.053 52.491 72.922 1 80.71 ? C2 78N 203 B 1 HETATM 15 C C1 78N . . . M 2 39.029 52.207 74.213 1 83.67 ? C1 78N 203 B 1 HETATM 16 C C9 78N . . . M 2 38.28 50.989 74.759 1 85 ? C9 78N 203 B 1 HETATM 17 C C10 78N . . . M 2 39.192 49.76 74.797 1 83.76 ? C10 78N 203 B 1 HETATM 18 C C11 78N . . . M 2 40.203 49.887 75.934 1 90.72 ? C11 78N 203 B 1 HETATM 19 C C12 78N . . . M 2 40.961 48.569 76.095 1 102.46 ? C12 78N 203 B 1 HETATM 20 C C13 78N . . . M 2 41.937 48.377 74.934 1 108 ? C13 78N 203 B 1 HETATM 21 C C15 78N . . . M 2 43.532 46.699 73.977 1 106.79 ? C15 78N 203 B 1 HETATM 22 C C14 78N . . . M 2 42.246 46.888 74.778 1 109.07 ? C14 78N 203 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 24 _model_server_stats.element_count 22 #